
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/162473/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUAD/1669676/1.GDAC_clinicalDataPicker.Finished/LUAD.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUAD", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"      "-oT=LUAD"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=292, in cluster file=303, common to both=285
[1] "Reduce the number of clustering variables from 80 to 79."
[1]  79 285
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               37               248 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               37               248 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              111               174 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              111               174 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               36               249 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               36               249 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               30               255 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               30               255 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                9               276 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                9               276 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               18               267 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               18               267 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               21               264 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               21               264 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                8               277 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                8               277 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              111               174 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              111               174 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               36               249 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               36               249 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               40               245 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               40               245 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               11               274 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               11               274 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               99               186 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               99               186 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               71               214 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               71               214 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               34               251 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               34               251 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               89               196 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               89               196 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                7               278 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                7               278 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                3               282 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                3               282 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                32                253 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                32                253 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                19                266 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                19                266 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                23                262 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                23                262 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                34                251 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                34                251 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                39                246 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                39                246 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                31                254 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                31                254 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                15                270 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                15                270 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                33                252 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                33                252 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                10                275 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                10                275 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                40                245 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                40                245 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                26                259 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                26                259 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                16                269 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                16                269 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                48                237 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                48                237 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                19                266 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                19                266 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                14                271 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                14                271 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 4                281 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 4                281 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                11                274 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                11                274 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                42                243 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                42                243 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                49                236 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                49                236 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                26                259 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                26                259 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                13                272 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                13                272 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               14               271 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               14               271 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               22               263 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               22               263 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               10               275 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               10               275 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                3               282 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                3               282 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               56               229 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               56               229 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               30               255 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               30               255 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               26               259 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               26               259 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               31               254 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               31               254 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                6               279 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                6               279 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               38               247 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               38               247 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               24               261 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               24               261 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               64               221 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               64               221 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               10               275 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               10               275 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               11               274 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               11               274 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               73               212 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               73               212 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               10               275 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               10               275 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               89               196 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               89               196 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               74               211 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               74               211 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                23                262 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                23                262 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                25                260 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                25                260 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                22                263 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                22                263 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                18                267 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                18                267 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                25                260 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                25                260 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                18                267 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                18                267 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                64                221 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                64                221 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                27                258 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                27                258 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                63                222 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                63                222 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                22                263 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                22                263 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                40                245 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                40                245 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                75                210 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                75                210 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                12                273 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                12                273 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                47                238 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                47                238 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                73                212 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                73                212 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                80                205 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                80                205 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                44                241 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                44                241 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                42                243 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                42                243 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                14                271 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                14                271 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                42                243 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                42                243 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                64                221 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                64                221 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                6               279 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                6               279 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NEOADJUVANTTHERAPY"                    
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 285 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-05-4244 TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 
          NA         1158          121          606          426           NA 
TCGA-05-4390 TCGA-05-4395 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        1126           NA          303           NA         1431           NA 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4410 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
          NA          610           NA           90          454           NA 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
         911           NA          913           NA          791          791 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
         761          761          730          457           31          151 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
          90           NA           30           62           14          224 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
         181          264         1448         2595         1147         1491 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
         863         1073          354         1357          158           NA 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
         574          581          400          529          103          480 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
         400           97          246          311          253          196 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
         189          140          106          498          208            9 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
         102          302          236           95          165           82 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
        1938           NA         1110           NA          298          162 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
         153           50          557           NA          531          535 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
         418         2318           NA           NA           NA         1081 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
        1421          428          999          268          896           NA 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
        1314          457          369          395          150            1 
TCGA-49-6767 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
          NA           NA         2174         1485          455          785 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
         297         1499          245          282          267         1091 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        2369          653          257          460          285          135 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
         373          349           NA           NA           NA           NA 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
          NA           NA         1015           NA          255         1068 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
         970          701         1178         1479         1374           87 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
           2          992           24           NA         1238           NA 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
          28         1475           NA           NA           NA           67 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
          NA           NA         1826           NA         1233         2161 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7570 TCGA-55-7573 TCGA-55-7574 
        1170           18           34           NA            4           95 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 
          40           39           31           24           19           16 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
         197           21            3         1728          628         1189 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
        1685         1126           NA         2550            3          926 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
         507         1145          223           30           60           18 
TCGA-67-3773 TCGA-67-3774 TCGA-67-4679 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
          62           18           NA           27           21          422 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
         154          186          690          414          129           61 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        1599          711          911          617          467           14 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-75-5122 TCGA-75-5125 TCGA-75-5126 
          40          122           38           NA           NA           NA 
TCGA-75-5146 TCGA-75-5147 TCGA-75-6203 TCGA-75-6205 TCGA-75-6206 TCGA-75-6207 
          NA           NA           NA           NA           NA           NA 
TCGA-75-6211 TCGA-75-6212 TCGA-75-6214 TCGA-75-7025 TCGA-75-7027 TCGA-75-7030 
          NA           NA           NA           NA           NA           NA 
TCGA-75-7031 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
          NA           NA           NA           NA           NA           NA 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
        1093           NA         1201          760           NA           NA 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
          NA           NA         1220          678          214           NA 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
        6812           NA           NA           NA           NA           NA 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-80-5607 
          NA          327          881           NA          994           NA 
TCGA-80-5608 TCGA-80-5611 TCGA-86-6562 TCGA-86-6851 TCGA-86-7701 TCGA-86-7711 
          NA           NA           NA           NA           11           27 
TCGA-86-7713 TCGA-86-7714 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
           7           NA           37           NA            1           39 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
          35           11           NA          819          127           28 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
          31          297          127           34            2          163 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
         963         1435         1476         1331          263          181 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
          NA           22          250 
Variable 1:'AGE':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=80,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=175,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=20,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=71,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
  1   2   3   4 
147  61  56  16 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 285 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=47, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=11, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 79 168  22  15 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 79 168  22  15 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 79 168  22  15 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 79 168  22  15 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
169  58  51   1 
[1] "table(vv)"
vv
   N0    N1 N2+N3 
  169    58    52 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
169  58  51   1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   N0    N1 N2+N3 
  169    58    52 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
147  61  56  16 
[1] "table(vv)"
vv
  I  II III  IV 
147  61  56  16 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
147  61  56  16 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
147  61  56  16 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    23  11
  1P GAIN WILD-TYPE 147  70
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               34               217 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               11                70 
$`1P GAIN MUTATED`
TCGA-05-4420 TCGA-05-4424 TCGA-05-4432 TCGA-05-5423 TCGA-05-5429 TCGA-38-4632 
       29.95        30.02        25.02         4.96         0.99        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2659 TCGA-44-6775 TCGA-44-6779 TCGA-44-7669 
        5.19        18.87        17.39         2.70        16.41        18.87 
TCGA-44-7672 TCGA-49-4501 TCGA-50-5944 TCGA-50-6591 TCGA-55-1592 TCGA-55-6980 
       13.74        46.72        12.26         3.88        23.05         2.20 
TCGA-55-6983 TCGA-55-7281 TCGA-55-7573 TCGA-64-1676 TCGA-64-1681 TCGA-67-6217 
       60.03         0.59         0.13        56.81        44.38        13.87 
TCGA-71-6725 TCGA-73-4668 TCGA-73-4676 TCGA-78-7145 TCGA-78-7147 TCGA-78-7155 
        2.01        15.35         4.01        27.16        19.27        38.50 
TCGA-78-7161 TCGA-78-7535 TCGA-91-6847 TCGA-95-7039 
        7.04        31.20        26.93         1.12 

$`1P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
        8.98        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        1.02         2.96         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-7271 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       35.28        11.64        26.30        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        36.49         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-49-4486 TCGA-49-4487 
        1.64        18.31        17.46        17.59        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
        4.44        11.47        42.31        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6984 
        3.88         5.46         7.76        45.34        32.71        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 
       40.54        71.05        38.47         1.12         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.28         1.02         0.79         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
        0.69         0.10        20.65        39.09        55.40        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        37.64         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69         5.06         6.12        22.68        13.61         4.24 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
        1.25       163.10         5.65        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       39.48        24.99        19.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
       22.29       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.28         1.15         0.36         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        9.76         4.18         0.07         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.13              0.03 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            60.03            223.96 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            16.90             12.16 
[1] "0.1 - 60.0 (16.9)"  "0.0 - 224.0 (12.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     21   16
  1P GAIN WILD-TYPE  133  115
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE              21               133
  MALE                16               115
D1V4, continuous
D1V5, multiclass
D1V6, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1              12                67
  T2              20               148
  T3               4                18
  T4               1                14
D1V7, multiclass
       clus
vv      1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0                 22               147
  N1                 13                45
  N2+N3               2                50
D1V8, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0              25               175
  M1               3                13
  MX               7                55
D1V9, multiclass
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  I                17               130
  II               14                47
  III               2                54
  IV                3                13
D1V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      1   36
  1P GAIN WILD-TYPE   12  236
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                1                12
  YES              36               236
D1V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      6   31
  1P GAIN WILD-TYPE   37  211
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                6                37
  YES              31               211

Clustering(2) Variable = 1q gain mutation analysis
D2V1, survival
                   sevent
clus2                0  1
  1Q GAIN MUTATED   71 29
  1Q GAIN WILD-TYPE 99 52
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              100               151 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               29                52 
$`1Q GAIN MUTATED`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4415 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 
       38.07        14.01         2.96        30.02        25.02        25.02 
TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-38-4625 TCGA-38-4629 
        4.96         0.99         2.04         0.46        47.61        28.37 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 
       44.61         5.19        26.30        18.87        19.10        17.39 
TCGA-44-2665 TCGA-44-2668 TCGA-44-5645 TCGA-44-6147 TCGA-44-6775 TCGA-44-6776 
       13.15         8.09         6.84         7.76         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7662 TCGA-44-7669 
       32.45        36.49        16.41         9.80         1.64        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4488 TCGA-49-4501 TCGA-49-4506 
       17.59        13.74        76.21        28.57        46.72        32.84 
TCGA-49-6742 TCGA-49-6743 TCGA-50-5051 TCGA-50-5931 TCGA-50-5944 TCGA-50-5946 
       15.02        12.13        14.96         8.78        12.26        11.47 
TCGA-50-6591 TCGA-55-1592 TCGA-55-6642 TCGA-55-6970 TCGA-55-6972 TCGA-55-6980 
        3.88        23.05        32.61        15.25        48.49         2.20 
TCGA-55-6983 TCGA-55-6984 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       60.03        24.99         0.59         1.12         0.13         3.12 
TCGA-55-7725 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        1.28         0.62         6.48         0.69         0.10        56.81 
TCGA-64-1680 TCGA-64-1681 TCGA-67-3771 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 
       37.02        44.38         1.97         0.59         0.89        13.87 
TCGA-69-7760 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        5.06        13.61         4.24         2.01        52.57        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7145 
       15.35         0.46         1.32         4.01         1.25        27.16 
TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       19.27        35.93        21.86        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 
       40.11         7.04        88.11        31.20        53.33        10.75 
TCGA-78-7633 TCGA-91-6828 TCGA-91-6847 TCGA-91-6849 TCGA-95-7039 TCGA-95-7567 
       32.68         1.22        26.93         0.92         1.12         5.36 
TCGA-97-7547 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18         8.65         5.95         0.59 

$`1Q GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
        8.02        20.05        14.93         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-35-4122 
       26.01        24.00        15.02         1.02         2.96         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 
        5.95         8.68        85.32        37.71        49.02        35.28 
TCGA-38-4631 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-3396 
       11.64        13.15         3.39        15.78         3.19        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-7660 
        0.30         3.35         9.93         3.12         5.42         5.33 
TCGA-44-7661 TCGA-44-7667 TCGA-44-7670 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
        5.03        18.31        17.46        28.11        12.66        35.54 
TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6744 
       14.07         8.81        29.46        29.75        43.20        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
        4.93         0.03        20.48        71.47        48.82        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6590 
       21.47         8.45        15.12         9.37         4.44        42.31 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        8.38        35.11        31.89        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 
        2.86         0.07         0.79        42.48        40.70         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6985 
        3.88         5.46         7.76        45.34        32.71        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7576 TCGA-55-7727 TCGA-55-7728 TCGA-55-7907 
       71.05        38.47         1.32         1.02         0.79         0.53 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        55.40        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        37.64         7.33         0.99         0.59         2.04 
TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 TCGA-73-4659 TCGA-73-4666 TCGA-78-7143 
        0.69         6.12        22.68        23.38        20.28       163.10 
TCGA-78-7146 TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7160 
        5.65        20.58        39.48        24.99        19.50        22.29 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7536 TCGA-78-7540 
      104.15       223.96         8.48        26.53         8.02        28.96 
TCGA-78-7542 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6829 TCGA-91-6830 
       10.55         0.36         0.89         0.23        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 
        1.28         1.15         0.36         4.18         1.02         9.76 
TCGA-93-7348 TCGA-95-7043 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7941 
        4.18         0.07        31.66        48.53        43.76         0.72 
TCGA-99-7458 
        8.22 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.10              0.03 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            88.11            223.96 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           13.805            12.660 
[1] "0.1 - 88.1 (13.8)"  "0.0 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     58   53
  1Q GAIN WILD-TYPE   96   78
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              58                96
  MALE                53                78
D2V4, continuous
D2V5, multiclass
D2V6, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1              33                46
  T2              61               107
  T3               9                13
  T4               7                 8
D2V7, multiclass
       clus
vv      1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0                 71                98
  N1                 23                35
  N2+N3              13                39
D2V8, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0              72               128
  M1               7                 9
  MX              28                34
D2V9, multiclass
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  I                63                84
  II               25                36
  III              13                43
  IV                8                 8
D2V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      5  106
  1Q GAIN WILD-TYPE    8  166
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO                5                 8
  YES             106               166
D2V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     21   90
  1Q GAIN WILD-TYPE   22  152
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO               21                22
  YES              90               152

Clustering(3) Variable = 2p gain mutation analysis
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED    21   9
  2P GAIN WILD-TYPE 149  72
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               30               221 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                9                72 
$`2P GAIN MUTATED`
TCGA-05-4420 TCGA-38-4630 TCGA-38-4632 TCGA-44-7670 TCGA-50-5946 TCGA-53-7624 
       29.95        35.28        44.61        17.46        11.47        35.11 
TCGA-55-1592 TCGA-55-1594 TCGA-55-6970 TCGA-55-7907 TCGA-55-7910 TCGA-64-1678 
       23.05        38.73        15.25         0.53         6.48        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-69-7764 TCGA-73-4675 TCGA-73-4676 TCGA-78-7145 
       37.02        83.84        13.61         1.32         4.01        27.16 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7155 TCGA-78-7163 TCGA-78-7220 TCGA-78-7539 
       35.93        21.86        38.50       223.96        26.53        10.75 
TCGA-78-7633 TCGA-86-7711 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 TCGA-97-7547 
       32.68         0.89        41.33         1.28         0.36        47.18 

$`2P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 
       85.32        37.71        49.02        28.37        11.64         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 
        5.33         5.03         1.64        18.31        18.87        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-55-1595 TCGA-55-1596 
       33.37         0.72         8.38        31.89        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 
        1.28         1.02         0.79         0.62         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        55.40        44.38         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        37.64         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        6.12        22.68         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-78-7143 
       29.95        20.28        15.35         0.46         1.25       163.10 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
        5.65        19.27        20.58        39.48        24.99        19.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 
        8.48        88.11        31.20         8.02        53.33        28.96 
TCGA-78-7542 TCGA-86-7701 TCGA-86-7713 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 
       10.55         0.36         0.23         1.22         0.03         1.15 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        1.12         0.07         5.36        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.36              0.03 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           223.96            163.10 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           26.845            12.130 
[1] "0.4 - 224.0 (26.8)" "0.0 - 163.1 (12.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     13   23
  2P GAIN WILD-TYPE  141  108
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              13               141
  MALE                23               108
D3V4, continuous
D3V5, multiclass
D3V6, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1               5                74
  T2              27               141
  T3               1                21
  T4               3                12
D3V7, multiclass
       clus
vv      2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0                 20               149
  N1                  9                49
  N2+N3               7                45
D3V8, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0              23               177
  M1               5                11
  MX               7                55
D3V9, multiclass
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  I                15               132
  II                9                52
  III               7                49
  IV                5                11
D3V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      2   34
  2P GAIN WILD-TYPE   11  238
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                2                11
  YES              34               238
D3V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      6   30
  2P GAIN WILD-TYPE   37  212
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                6                37
  YES              30               212

Clustering(4) Variable = 2q gain mutation analysis
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    16   8
  2Q GAIN WILD-TYPE 154  73
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               24               227 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                8                73 
$`2Q GAIN MUTATED`
TCGA-35-5375 TCGA-38-4630 TCGA-38-4632 TCGA-44-7670 TCGA-53-7624 TCGA-55-1592 
        8.68        35.28        44.61        17.46        35.11        23.05 
TCGA-55-1594 TCGA-55-6970 TCGA-55-7907 TCGA-55-7910 TCGA-64-1680 TCGA-67-3771 
       38.73        15.25         0.53         6.48        37.02         1.97 
TCGA-69-7764 TCGA-73-4675 TCGA-78-7149 TCGA-78-7150 TCGA-78-7155 TCGA-78-7163 
       13.61         1.32        35.93        21.86        38.50       223.96 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7539 TCGA-78-7633 TCGA-91-6836 TCGA-97-7547 
       88.11        26.53        10.75        32.68         0.36        47.18 

$`2Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 
       85.32        37.71        49.02        28.37        11.64         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 
        5.33         5.03         1.64        18.31        18.87        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-55-1595 
        6.21        33.37         0.72         8.38        31.89        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7911 
        1.32         1.28         1.02         0.79         0.62         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 
        0.10        56.81        20.65        39.09        55.40        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        37.64         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 
       13.87         5.06         6.12        22.68         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        4.01         1.25       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 
       20.58        39.48        24.99        19.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7535 
       40.11        22.29         7.04       104.15         8.48        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-86-7701 TCGA-86-7711 
        8.02        53.33        28.96        10.55         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        1.12         0.07         5.36        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.36              0.03 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           223.96            163.10 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            24.79             12.16 
[1] "0.4 - 224.0 (24.8)" "0.0 - 163.1 (12.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     13   17
  2Q GAIN WILD-TYPE  141  114
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE              13               141
  MALE                17               114
D4V4, continuous
[1] "Remove cluster labels:" "2Q GAIN MUTATED"       
clus
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                2                23 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7914        TCGA-64-1677        TCGA-64-1681 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7714 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
D4V5, multiclass
D4V6, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1               5                74
  T2              23               145
  T3               1                21
  T4               1                14
D4V7, multiclass
       clus
vv      2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0                 18               151
  N1                  6                52
  N2+N3               6                46
D4V8, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0              21               179
  M1               4                12
  MX               4                58
D4V9, multiclass
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  I                13               134
  II                6                55
  III               7                49
  IV                4                12
D4V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      1   29
  2Q GAIN WILD-TYPE   12  243
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                1                12
  YES              29               243
D4V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      4   26
  2Q GAIN WILD-TYPE   39  216
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                4                39
  YES              26               216

Clustering(5) Variable = 3p gain mutation analysis
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED     5   4
  3P GAIN WILD-TYPE 165  77
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                9               242 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                4                77 
$`3P GAIN MUTATED`
TCGA-05-4427 TCGA-35-5375 TCGA-49-4487 TCGA-49-4488 TCGA-50-5946 TCGA-64-5775 
       26.01         8.68        28.11        28.57        11.47         0.10 
TCGA-69-7760 TCGA-73-4676 TCGA-78-7145 
        5.06         4.01        27.16 

$`3P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4490 TCGA-49-4494 
       17.46        17.59        13.74        76.21        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 
       33.37         0.72         8.38        35.11        31.89        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        0.79         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84        30.44        16.67        37.64         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
       13.87         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.32         1.25       163.10         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 
       53.33        10.75        28.96        10.55        32.68         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.89         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 
        9.76         4.18         1.12         0.07         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.10              0.03 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            28.57            223.96 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            11.47             13.38 
[1] "0.1 - 28.6 (11.5)"  "0.0 - 224.0 (13.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "2.2"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      4    5
  3P GAIN WILD-TYPE  150  126
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE               4               150
  MALE                 5               126
D5V4, continuous
[1] "Remove cluster labels:" "3P GAIN MUTATED"       
clus
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                2                23 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-75-5122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7714 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
D5V5, multiclass
D5V6, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1               3                76
  T2               3               165
  T3               1                21
  T4               2                13
D5V7, multiclass
       clus
vv      3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0                  5               164
  N1                  3                55
  N2+N3               1                51
D5V8, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0               6               194
  M1               1                15
  MX               2                60
D5V9, multiclass
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  I                 3               144
  II                3                58
  III               2                54
  IV                1                15
D5V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      1    8
  3P GAIN WILD-TYPE   12  264
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                1                12
  YES               8               264
D5V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      2    7
  3P GAIN WILD-TYPE   41  235
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                2                41
  YES               7               235

Clustering(6) Variable = 3q gain mutation analysis
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED    10   6
  3Q GAIN WILD-TYPE 160  75
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               16               235 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                6                75 
$`3Q GAIN MUTATED`
TCGA-05-4427 TCGA-05-5429 TCGA-35-5375 TCGA-44-5643 TCGA-44-7660 TCGA-44-7670 
       26.01         0.99         8.68         3.48         5.33        17.46 
TCGA-49-4487 TCGA-49-4488 TCGA-50-5931 TCGA-50-5946 TCGA-55-1594 TCGA-55-6984 
       28.11        28.57         8.78        11.47        38.73        24.99 
TCGA-69-7760 TCGA-73-4676 TCGA-78-7145 TCGA-78-7146 
        5.06         4.01        27.16         5.65 

$`3Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       24.00        15.02         1.02         4.96         2.96         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 
       63.72        32.45        36.49        16.41         9.80         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        1.64        18.31        18.87        17.59        13.74        76.21 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81         9.76        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       60.03        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.62         0.53         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        37.64         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
       13.87         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4677 TCGA-78-7143 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
        1.32         1.25       163.10        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 
       10.75        28.96        10.55        32.68         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        4.18         1.12         0.07         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.99              0.03 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            38.73            223.96 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           10.125            13.610 
[1] "1.0 - 38.7 (10.1)"  "0.0 - 224.0 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      9    9
  3Q GAIN WILD-TYPE  145  122
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE               9               145
  MALE                 9               122
D6V4, continuous
[1] "Remove cluster labels:" "3Q GAIN MUTATED"       
clus
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                2                23 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-75-5122 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7714 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
D6V5, multiclass
D6V6, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1               5                74
  T2              10               158
  T3               2                20
  T4               1                14
D6V7, multiclass
       clus
vv      3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0                  8               161
  N1                  5                53
  N2+N3               5                47
D6V8, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0              14               186
  M1               1                15
  MX               3                59
D6V9, multiclass
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  I                 7               140
  II                5                56
  III               5                51
  IV                1                15
D6V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      2   16
  3Q GAIN WILD-TYPE   11  256
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO                2                11
  YES              16               256
D6V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      4   14
  3Q GAIN WILD-TYPE   39  228
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO                4                39
  YES              14               228

Clustering(7) Variable = 4p gain mutation analysis
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED     9   9
  4P GAIN WILD-TYPE 161  72
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               18               233 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                9                72 
$`4P GAIN MUTATED`
TCGA-05-5423 TCGA-38-4629 TCGA-38-4631 TCGA-44-4112 TCGA-44-5645 TCGA-50-6594 
        4.96        28.37        11.64         4.60         6.84        12.16 
TCGA-50-7109 TCGA-53-7624 TCGA-55-1594 TCGA-64-1680 TCGA-64-1681 TCGA-78-7145 
        8.38        35.11        38.73        37.02        44.38        27.16 
TCGA-78-7150 TCGA-78-7163 TCGA-78-7220 TCGA-78-7535 TCGA-78-7542 TCGA-91-6836 
       21.86       223.96        26.53        31.20        10.55         0.36 

$`4P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       85.32        37.71        49.02        35.28        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         3.48        16.37         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-50-6673 TCGA-53-7626 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        0.72        31.89        23.05        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.28         1.02         0.79         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        0.69         0.10        56.81        20.65        39.09        55.40 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        37.64         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.24         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
       15.35         0.46         1.32         4.01         1.25       163.10 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 
        5.65        19.27        20.58        35.93        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7536 TCGA-78-7537 
        7.04       104.15         8.48        88.11         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.75        28.96        32.68         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
        1.22        41.33         0.03         1.28         1.15        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.07         5.36        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             0.36              0.03 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           223.96            163.10 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           24.195            13.150 
[1] "0.4 - 224.0 (24.2)" "0.0 - 163.1 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      9   12
  4P GAIN WILD-TYPE  145  119
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               9               145
  MALE                12               119
D7V4, continuous
[1] "Remove cluster labels:" "4P GAIN MUTATED"       
clus
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                1                24 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7910        TCGA-55-7914 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7714        TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
D7V5, multiclass
D7V6, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1               2                77
  T2              15               153
  T3               2                20
  T4               1                14
D7V7, multiclass
       clus
vv      4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0                 13               156
  N1                  3                55
  N2+N3               4                48
D7V8, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  M0              15               185
  M1               3                13
  MX               2                60
D7V9, multiclass
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  I                12               135
  II                3                58
  III               3                53
  IV                3                13
D7V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      1   20
  4P GAIN WILD-TYPE   12  252
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                1                12
  YES              20               252
D7V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      3   18
  4P GAIN WILD-TYPE   40  224
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                3                40
  YES              18               224

Clustering(8) Variable = 4q gain mutation analysis
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     3   3
  4Q GAIN WILD-TYPE 167  78
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                6               245 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                78 
$`4Q GAIN MUTATED`
TCGA-38-4629 TCGA-50-6594 TCGA-64-1680 TCGA-78-7163 TCGA-78-7542 TCGA-91-6836 
       28.37        12.16        37.02       223.96        10.55         0.36 

$`4Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 
       47.61        85.32        37.71        49.02        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       25.51        11.05         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       35.11        31.89        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 
        1.32         1.28         1.02         0.79         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        6.48         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       55.40        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       37.64         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.25       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.75        28.96        32.68         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
        1.22        41.33         0.03         1.28         1.15        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.07         5.36        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             0.36              0.03 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           223.96            163.10 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           20.265            13.150 
[1] "0.4 - 224.0 (20.3)" "0.0 - 163.1 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      2    6
  4Q GAIN WILD-TYPE  152  125
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               2               152
  MALE                 6               125
D8V4, continuous
D8V5, multiclass
D8V6, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               0                79
  T2               6               162
  T3               2                20
  T4               0                15
D8V7, multiclass
       clus
vv      4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0                  6               163
  N1                  0                58
  N2+N3               2                50
D8V8, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0               6               194
  M1               1                15
  MX               1                61
D8V9, multiclass
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  I                 5               142
  II                1                60
  III               1                55
  IV                1                15
D8V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1    7
  4Q GAIN WILD-TYPE   12  265
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                1                12
  YES               7               265
D8V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1    7
  4Q GAIN WILD-TYPE   42  235
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                1                42
  YES               7               235

Clustering(9) Variable = 5p gain mutation analysis
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED    66  33
  5P GAIN WILD-TYPE 104  48
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               99               152 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               33                48 
$`5P GAIN MUTATED`
TCGA-05-4405 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-5423 TCGA-05-5425 
       20.05        30.02        26.01        25.02         4.96         2.96 
TCGA-35-3615 TCGA-35-5375 TCGA-38-4626 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
        0.46         8.68        85.32        49.02        28.37        11.64 
TCGA-38-4632 TCGA-44-2656 TCGA-44-2659 TCGA-44-2668 TCGA-44-3919 TCGA-44-4112 
       44.61        19.10        17.39         8.09         6.21         4.60 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
       16.37         6.84         7.76         5.42         2.70        32.45 
TCGA-44-7659 TCGA-44-7662 TCGA-44-7669 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        9.80         1.64        18.87        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4512 TCGA-49-6743 TCGA-49-6744 TCGA-50-5045 
       46.72        14.07        29.75        12.13        12.99        71.47 
TCGA-50-5051 TCGA-50-5930 TCGA-50-5933 TCGA-50-5935 TCGA-50-5946 TCGA-50-6591 
       14.96         9.27        77.88        21.47        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 
       25.51        11.05         8.38        35.11        31.89        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6970 TCGA-55-6972 
       38.73        48.62         2.86         0.07        15.25        48.49 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6987 TCGA-55-7725 TCGA-55-7727 
        7.76         2.20        45.34        38.47         1.28         1.02 
TCGA-55-7903 TCGA-55-7910 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
        0.62         6.48        55.40        37.02        83.84        30.44 
TCGA-67-3770 TCGA-67-3773 TCGA-67-6215 TCGA-69-7760 TCGA-69-7764 TCGA-69-7765 
        0.99         2.04         0.89         5.06        13.61         4.24 
TCGA-73-4658 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 
       52.57        15.35         0.46         1.32         4.01       163.10 
TCGA-78-7147 TCGA-78-7149 TCGA-78-7154 TCGA-78-7155 TCGA-78-7163 TCGA-78-7166 
       19.27        35.93        19.50        38.50       223.96         8.48 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-78-7633 TCGA-86-7711 
       26.53        31.20         8.02        10.75        32.68         0.89 
TCGA-91-6828 TCGA-91-6836 TCGA-93-7347 TCGA-93-7348 TCGA-97-7547 TCGA-97-7553 
        1.22         0.36         9.76         4.18        47.18        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
        8.65         5.95         0.59 

$`5P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       29.95        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4627 
        0.99         2.04         7.36         5.95        47.61        37.71 
TCGA-38-4630 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 
       35.28         5.19        26.30        18.87        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19        10.22         8.32         6.44 
TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6776 
        3.48         0.30         3.35         9.93         3.12        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7661 TCGA-44-7667 TCGA-44-7670 
       36.49        16.41         5.33         5.03        18.31        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4494 TCGA-49-4506 TCGA-49-4507 
       17.59        13.74        76.21        35.54        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       29.46        43.20        15.02         4.93         0.03        20.48 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 
       48.82        25.81         9.76        49.28         8.05         8.78 
TCGA-50-5932 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       35.87         8.45        15.12         9.37         4.44        12.26 
TCGA-50-6590 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-55-1596 
       42.31        12.16         6.21        33.37         0.72        45.17 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 
       32.61         0.79        42.48        40.70         0.92         3.88 
TCGA-55-6978 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
        5.46        32.71        60.03        24.99        40.54        71.05 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7728 
        0.59         1.12         0.13         3.12         1.32         0.79 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.53         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 
       44.38         0.10        16.67        37.64         7.33         1.97 
TCGA-67-3772 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 
        0.59         0.59         0.69        13.87         6.12        22.68 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4677 TCGA-78-7145 
        2.01        23.38        29.95        20.28         1.25        27.16 
TCGA-78-7146 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 
        5.65        20.58        21.86        39.48        24.99        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7167 
        5.88        40.11        22.29         7.04       104.15        88.11 
TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-86-7701 TCGA-86-7713 TCGA-91-6829 
       53.33        28.96        10.55         0.36         0.23        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 
        1.02         1.12         0.07         5.36        31.66        48.53 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.07              0.03 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           223.96            104.15 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            13.61             13.15 
[1] "0.1 - 224.0 (13.6)" "0.0 - 104.2 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     58   53
  5P GAIN WILD-TYPE   96   78
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              58                96
  MALE                53                78
D9V4, continuous
D9V5, multiclass
D9V6, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1              34                45
  T2              66               102
  T3               6                16
  T4               4                11
D9V7, multiclass
       clus
vv      5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0                 65               104
  N1                 21                37
  N2+N3              22                30
D9V8, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0              76               124
  M1               6                10
  MX              26                36
D9V9, multiclass
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  I                58                89
  II               23                38
  III              22                34
  IV                7                 9
D9V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      7  104
  5P GAIN WILD-TYPE    6  168
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO                7                 6
  YES             104               168
D9V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     18   93
  5P GAIN WILD-TYPE   25  149
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO               18                25
  YES              93               149

Clustering(10) Variable = 5q gain mutation analysis
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    24  10
  5Q GAIN WILD-TYPE 146  71
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               34               217 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               10                71 
$`5Q GAIN MUTATED`
TCGA-05-4426 TCGA-05-5423 TCGA-35-3615 TCGA-44-2659 TCGA-44-2665 TCGA-44-4112 
       26.01         4.96         0.46        17.39        13.15         4.60 
TCGA-44-5645 TCGA-44-6777 TCGA-44-7659 TCGA-49-4501 TCGA-49-4512 TCGA-50-5051 
        6.84        32.45         9.80        46.72        29.75        14.96 
TCGA-50-5935 TCGA-50-6591 TCGA-50-6592 TCGA-55-1595 TCGA-55-6543 TCGA-55-6972 
       21.47         3.88        25.51        48.62         0.07        48.49 
TCGA-55-6980 TCGA-55-7910 TCGA-64-1680 TCGA-64-5775 TCGA-67-6215 TCGA-69-7760 
        2.20         6.48        37.02         0.10         0.89         5.06 
TCGA-73-4675 TCGA-78-7147 TCGA-78-7163 TCGA-78-7220 TCGA-78-7536 TCGA-78-7539 
        1.32        19.27       223.96        26.53         8.02        10.75 
TCGA-78-7633 TCGA-91-6836 TCGA-93-7347 TCGA-97-7547 
       32.68         0.36         9.76        47.18 

$`5Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
       26.30        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48        16.37         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42         2.70        63.72        36.49        16.41 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 
       35.54        14.07        32.84         8.81        29.46        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        77.88         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6593 
        9.37         4.44        12.26        11.47        42.31        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 
       31.89        23.05        38.73        45.17         2.86        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 
        0.79        42.48        40.70        15.25         0.92         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        5.46         7.76        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 
        3.12         1.32         1.28         1.02         0.79         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.53         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       55.40        44.38        83.84        30.44        16.67        37.64 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        0.46         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7537 TCGA-78-7540 
      104.15         8.48        88.11        31.20        53.33        28.96 
TCGA-78-7542 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       10.55         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 
        1.02         4.18         1.12         0.07         5.36        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.07              0.03 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           223.96            163.10 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            11.95             13.61 
[1] "0.1 - 224.0 (11.9)" "0.0 - 163.1 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     22   14
  5Q GAIN WILD-TYPE  132  117
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE              22               132
  MALE                14               117
D10V4, continuous
[1] "Remove cluster labels:" "5Q GAIN MUTATED"       
clus
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                1                24 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7914        TCGA-64-1677 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-7714        TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
D10V5, multiclass
D10V6, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1               7                72
  T2              25               143
  T3               2                20
  T4               1                14
D10V7, multiclass
       clus
vv      5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0                 23               146
  N1                  5                53
  N2+N3               6                46
D10V8, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0              25               175
  M1               3                13
  MX               6                56
D10V9, multiclass
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  I                19               128
  II                7                54
  III               6                50
  IV                3                13
D10V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      3   33
  5Q GAIN WILD-TYPE   10  239
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                3                10
  YES              33               239
D10V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      9   27
  5Q GAIN WILD-TYPE   34  215
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                9                34
  YES              27               215

Clustering(11) Variable = 6p gain mutation analysis
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    28  11
  6P GAIN WILD-TYPE 142  70
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               39               212 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               11                70 
$`6P GAIN MUTATED`
TCGA-05-4420 TCGA-05-5425 TCGA-35-3615 TCGA-35-5375 TCGA-38-4625 TCGA-44-6147 
       29.95         2.96         0.46         8.68        47.61         7.76 
TCGA-44-6774 TCGA-44-7667 TCGA-44-7670 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 
        5.42        18.31        17.46         9.37        12.26        11.47 
TCGA-50-6591 TCGA-50-6673 TCGA-50-7109 TCGA-55-1592 TCGA-55-1595 TCGA-55-6970 
        3.88         0.72         8.38        23.05        48.62        15.25 
TCGA-64-1677 TCGA-64-1680 TCGA-67-3773 TCGA-69-7763 TCGA-69-7764 TCGA-71-6725 
       20.65        37.02         2.04        22.68        13.61         2.01 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-78-7147 TCGA-78-7149 
       29.95        15.35         0.46         1.25        19.27        35.93 
TCGA-78-7155 TCGA-78-7161 TCGA-78-7162 TCGA-78-7220 TCGA-78-7539 TCGA-78-7633 
       38.50         7.04       104.15        26.53        10.75        32.68 
TCGA-91-6836 TCGA-97-7553 TCGA-97-7938 
        0.36        43.76         0.59 

$`6P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         4.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 
       35.28        11.64        44.61         5.19        26.30        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        4.60         3.48        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        9.93         3.12         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 
       16.41         9.80         5.33         5.03         1.64        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-6590 
       77.88        21.47         8.45        15.12         4.44        42.31 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-53-7624 
       25.51        11.05        12.16         6.21        33.37        35.11 
TCGA-53-7626 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       31.89        38.73        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        42.48        40.70         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.62         0.53         6.48         0.69         0.10        56.81 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       39.09        55.40        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        37.64         7.33         0.99         1.97         0.59 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 
        4.24        52.57        23.38        20.28         1.32         4.01 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 
      163.10        27.16         5.65        20.58        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       24.99        19.50        32.09         5.88        40.11        22.29 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        88.11        31.20         8.02        53.33 
TCGA-78-7540 TCGA-78-7542 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       28.96        10.55         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 
       41.33         0.03         1.28         1.15        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        0.92         1.02         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7554 TCGA-97-7937 
        5.36        31.66        47.18        48.53         8.65         5.95 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.36              0.03 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           104.15            223.96 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            13.61             13.15 
[1] "0.4 - 104.2 (13.6)" "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     24   16
  6P GAIN WILD-TYPE  130  115
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE              24               130
  MALE                16               115
D11V4, continuous
D11V5, multiclass
D11V6, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1              15                64
  T2              21               147
  T3               3                19
  T4               1                14
D11V7, multiclass
       clus
vv      6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0                 28               141
  N1                  4                54
  N2+N3               7                45
D11V8, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0              29               171
  M1               3                13
  MX               8                54
D11V9, multiclass
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  I                23               124
  II                7                54
  III               7                49
  IV                3                13
D11V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      2   38
  6P GAIN WILD-TYPE   11  234
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                2                11
  YES              38               234
D11V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      7   33
  6P GAIN WILD-TYPE   36  209
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                7                36
  YES              33               209

Clustering(12) Variable = 6q gain mutation analysis
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED     8   3
  6Q GAIN WILD-TYPE 162  78
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               11               240 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                3                78 
$`6Q GAIN MUTATED`
TCGA-38-4625 TCGA-44-7667 TCGA-44-7670 TCGA-50-6591 TCGA-50-6673 TCGA-50-7109 
       47.61        18.31        17.46         3.88         0.72         8.38 
TCGA-55-7910 TCGA-71-6725 TCGA-78-7220 TCGA-78-7539 TCGA-91-6836 
        6.48         2.01        26.53        10.75         0.36 

$`6Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 
       16.41         9.80         5.33         5.03         1.64        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
        6.21        33.37        35.11        31.89        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.62         0.53         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        37.64         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 
        5.06         6.12        22.68        13.61         4.24        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        4.01         1.25       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
      104.15       223.96         8.48        88.11        31.20         8.02 
TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 
       53.33        28.96        10.55        32.68         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.12         0.07         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.36              0.03 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            47.61            223.96 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            8.380            13.675 
[1] "0.4 - 47.6 (8.4)"   "0.0 - 224.0 (13.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     10    1
  6Q GAIN WILD-TYPE  144  130
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE              10               144
  MALE                 1               130
D12V4, continuous
[1] "Remove cluster labels:" "6Q GAIN MUTATED"       
clus
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                2                23 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7914        TCGA-64-1677 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-73-4659        TCGA-73-4662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7714 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
D12V5, multiclass
D12V6, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1               4                75
  T2               6               162
  T3               1                21
  T4               0                15
D12V7, multiclass
       clus
vv      6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0                  9               160
  N1                  1                57
  N2+N3               1                51
D12V8, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0               7               193
  M1               1                15
  MX               3                59
D12V9, multiclass
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  I                 5               142
  II                4                57
  III               1                55
  IV                1                15
D12V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      0   11
  6Q GAIN WILD-TYPE   13  261
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                0                13
  YES              11               261
D12V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      2    9
  6Q GAIN WILD-TYPE   41  233
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                2                41
  YES               9               233

Clustering(13) Variable = 7p gain mutation analysis
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    54  33
  7P GAIN WILD-TYPE 116  48
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               87               164 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               33                48 
$`7P GAIN MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
        3.98        37.02        47.05         8.02        20.05         2.96 
TCGA-05-4420 TCGA-05-5423 TCGA-35-4122 TCGA-35-5375 TCGA-38-4628 TCGA-38-4629 
       29.95         4.96         7.36         8.68        49.02        28.37 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 
       11.64        44.61         5.19        19.10        17.39        15.78 
TCGA-44-3396 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6147 
       10.22         4.60        16.37         6.84         0.30         7.76 
TCGA-44-6775 TCGA-44-7660 TCGA-44-7662 TCGA-44-7669 TCGA-49-4488 TCGA-49-4490 
        2.70         5.33         1.64        18.87        28.57        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4512 TCGA-49-6745 TCGA-49-6761 TCGA-50-5045 
       35.54        14.07        29.75         4.93         0.03        71.47 
TCGA-50-5055 TCGA-50-5933 TCGA-50-5936 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       25.81        77.88         8.45        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-53-7624 
        3.88        11.05        12.16         6.21         0.72        35.11 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-55-6972 TCGA-55-6979 TCGA-55-6980 
        2.86         0.07         0.79        48.49         7.76         2.20 
TCGA-55-6981 TCGA-55-6985 TCGA-55-7283 TCGA-55-7576 TCGA-55-7910 TCGA-64-1680 
       45.34        40.54         1.12         1.32         6.48        37.02 
TCGA-64-1681 TCGA-64-5779 TCGA-64-5781 TCGA-67-6217 TCGA-69-7760 TCGA-71-6725 
       44.38        16.67        37.64        13.87         5.06         2.01 
TCGA-73-4658 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 
       52.57         0.46         1.32         4.01       163.10        27.16 
TCGA-78-7147 TCGA-78-7150 TCGA-78-7154 TCGA-78-7155 TCGA-78-7161 TCGA-78-7163 
       19.27        21.86        19.50        38.50         7.04       223.96 
TCGA-78-7535 TCGA-78-7540 TCGA-86-7701 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
       31.20        28.96         0.36         1.28         1.15        26.93 
TCGA-91-6848 TCGA-97-7554 TCGA-97-7937 
        4.18         8.65         5.95 

$`7P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 
       38.07        19.92        14.01         9.96        24.03        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 
        0.46         5.95        47.61        85.32        37.71        35.28 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       26.30        18.87        13.15         3.39        13.15         3.19 
TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-6145 
        8.09         8.32         6.44         6.21         3.48         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        9.93         3.12         5.42        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 
       16.41         9.80         5.03        18.31        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       13.74        76.21        28.11        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-50-5044 
       29.46        43.20        15.02        12.13        12.99        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        14.96         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        8.78        35.87        21.47        15.12         9.37         4.44 
TCGA-50-6592 TCGA-50-6597 TCGA-50-7109 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
       25.51        33.37         8.38        31.89        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
       48.62        45.17        32.61        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        0.92         3.88         5.46        32.71        60.03        24.99 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 
       71.05        38.47         0.59         0.13         3.12         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 
        1.02         0.79         0.62         0.53         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        55.40        83.84         0.10 
TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       30.44         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.59         0.89         0.69         6.12        22.68        13.61 
TCGA-69-7765 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4677 
        4.24        23.38        29.95        20.28        15.35         1.25 
TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 
        5.65        20.58        35.93        39.48        24.99        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
        5.88        40.11        22.29       104.15         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 
       26.53         8.02        53.33        10.75        10.55        32.68 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6836 
        0.89         0.23         1.22        41.33         0.03         0.36 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        0.92         1.02         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 
        5.36        31.66        47.18        48.53        43.76         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.03              0.03 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           223.96            104.15 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            11.64             14.47 
[1] "0.0 - 224.0 (11.6)" "0.0 - 104.2 (14.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     53   46
  7P GAIN WILD-TYPE  101   85
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              53               101
  MALE                46                85
D13V4, continuous
D13V5, multiclass
D13V6, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1              20                59
  T2              63               105
  T3              10                12
  T4               5                10
D13V7, multiclass
       clus
vv      7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0                 49               120
  N1                 21                37
  N2+N3              26                26
D13V8, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0              68               132
  M1               9                 7
  MX              17                45
D13V9, multiclass
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  I                43               104
  II               19                42
  III              25                31
  IV                9                 7
D13V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      4   95
  7P GAIN WILD-TYPE    9  177
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO                4                 9
  YES              95               177
D13V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     16   83
  7P GAIN WILD-TYPE   27  159
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO               16                27
  YES              83               159

Clustering(14) Variable = 7q gain mutation analysis
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    44  19
  7Q GAIN WILD-TYPE 126  62
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               63               188 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               19                62 
$`7Q GAIN MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
        3.98        37.02        47.05         8.02        20.05         2.96 
TCGA-05-4420 TCGA-05-5423 TCGA-05-5425 TCGA-35-4122 TCGA-35-5375 TCGA-38-4632 
       29.95         4.96         2.96         7.36         8.68        44.61 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2662 TCGA-44-3396 TCGA-44-5645 TCGA-44-6144 
        5.19        19.10        15.78        10.22         6.84         0.30 
TCGA-44-6147 TCGA-44-7660 TCGA-44-7662 TCGA-44-7669 TCGA-49-4490 TCGA-49-4494 
        7.76         5.33         1.64        18.87        12.66        35.54 
TCGA-49-4505 TCGA-49-4512 TCGA-49-6745 TCGA-50-5045 TCGA-50-5930 TCGA-50-5944 
       14.07        29.75         4.93        71.47         9.27        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-55-1592 TCGA-55-6543 TCGA-55-6712 
       11.47        42.31         3.88        23.05         0.07         0.79 
TCGA-55-6972 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6985 TCGA-55-7283 
       48.49         7.76         2.20        45.34        40.54         1.12 
TCGA-55-7576 TCGA-55-7910 TCGA-64-1680 TCGA-64-1681 TCGA-64-5781 TCGA-69-7760 
        1.32         6.48        37.02        44.38        37.64         5.06 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
        2.01        52.57        20.28         0.46         1.32         4.01 
TCGA-78-7145 TCGA-78-7163 TCGA-78-7540 TCGA-86-7701 TCGA-91-6835 TCGA-91-6847 
       27.16       223.96        28.96         0.36         1.15        26.93 
TCGA-91-6848 TCGA-97-7554 TCGA-97-7937 
        4.18         8.65         5.95 

$`7Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 
       38.07        19.92        14.01         9.96        24.03        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       24.00        15.02         1.02         0.99         2.04         0.46 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       35.28        11.64        26.30        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
        3.39        13.15         3.19         8.09         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         3.48        16.37         3.35         9.93 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 
       16.41         9.80         5.03        18.31        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4501 TCGA-49-4506 
       13.74        76.21        28.11        28.57        46.72        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        43.20        15.02        12.13        12.99 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6592 TCGA-50-6593 
        8.45        15.12         9.37         4.44        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 
       31.89        38.73        48.62        45.17         2.86        32.61 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 
       42.48        40.70        15.25         0.92         3.88         5.46 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       32.71        60.03        24.99        71.05        38.47         0.59 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 
        0.13         3.12         1.28         1.02         0.79         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.53         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       55.40        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 
       23.38        29.95        15.35         1.25       163.10         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
        7.04       104.15         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-86-7711 
        8.02        53.33        10.75        10.55        32.68         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 
        0.23         1.22        41.33         0.03         1.28         0.36 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        0.92         1.02         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 
        5.36        31.66        47.18        48.53        43.76         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.07              0.03 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           223.96            163.10 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            8.680            14.945 
[1] "0.1 - 224.0 (8.7)"  "0.0 - 163.1 (14.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     35   36
  7Q GAIN WILD-TYPE  119   95
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              35               119
  MALE                36                95
D14V4, continuous
D14V5, multiclass
D14V6, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1              14                65
  T2              45               123
  T3               7                15
  T4               4                11
D14V7, multiclass
       clus
vv      7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0                 36               133
  N1                 15                43
  N2+N3              17                35
D14V8, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0              45               155
  M1               8                 8
  MX              14                48
D14V9, multiclass
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  I                30               117
  II               13                48
  III              17                39
  IV                8                 8
D14V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      5   66
  7Q GAIN WILD-TYPE    8  206
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO                5                 8
  YES              66               206
D14V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     12   59
  7Q GAIN WILD-TYPE   31  183
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO               12                31
  YES              59               183

Clustering(15) Variable = 8p gain mutation analysis
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    24   6
  8P GAIN WILD-TYPE 146  75
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               30               221 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                6                75 
$`8P GAIN MUTATED`
TCGA-05-4417 TCGA-05-4432 TCGA-35-5375 TCGA-38-4629 TCGA-44-6147 TCGA-44-6778 
       14.93        25.02         8.68        28.37         7.76        36.49 
TCGA-44-7667 TCGA-44-7669 TCGA-49-4512 TCGA-50-5051 TCGA-50-5944 TCGA-50-5946 
       18.31        18.87        29.75        14.96        12.26        11.47 
TCGA-50-7109 TCGA-55-1596 TCGA-55-6969 TCGA-55-6972 TCGA-64-1680 TCGA-64-5779 
        8.38        45.17        40.70        48.49        37.02        16.67 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7153 TCGA-78-7158 
        0.46         1.32         4.01         1.25        24.99         5.88 
TCGA-78-7159 TCGA-78-7535 TCGA-91-6831 TCGA-91-7771 TCGA-97-7547 TCGA-97-7553 
       40.11        31.20         1.28         1.02        47.18        43.76 

$`8P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       49.02        35.28        11.64        44.61         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.21         4.60         3.48        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       32.45        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6590 
       21.47         8.45        15.12         9.37         4.44        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
        0.72        35.11        31.89        23.05        38.73        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6970 
        2.86         0.07        32.61         0.79        42.48        15.25 
TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
        0.92         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        1.02         0.79         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 
        0.10        56.81        20.65        39.09        55.40        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        37.64         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7160 
       21.86        39.48        19.50        38.50        32.09        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 
        1.15         0.36        26.93         4.18         0.92         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 
        4.18         1.12         0.07         5.36        31.66        48.53 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.46              0.03 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            48.49            223.96 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            17.49             12.66 
[1] "0.5 - 48.5 (17.5)"  "0.0 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     14   20
  8P GAIN WILD-TYPE  140  111
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              14               140
  MALE                20               111
D15V4, continuous
[1] "Remove cluster labels:" "8P GAIN MUTATED"       
clus
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                2                23 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-75-5122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7714 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
D15V5, multiclass
D15V6, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1               8                71
  T2              21               147
  T3               4                18
  T4               1                14
D15V7, multiclass
       clus
vv      8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0                 20               149
  N1                  6                52
  N2+N3               6                46
D15V8, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0              21               179
  M1               2                14
  MX              11                51
D15V9, multiclass
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  I                18               129
  II                8                53
  III               6                50
  IV                2                14
D15V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      2   32
  8P GAIN WILD-TYPE   11  240
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                2                11
  YES              32               240
D15V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      8   26
  8P GAIN WILD-TYPE   35  216
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                8                35
  YES              26               216

Clustering(16) Variable = 8q gain mutation analysis
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED    51  24
  8Q GAIN WILD-TYPE 119  57
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               75               176 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               24                57 
$`8Q GAIN MUTATED`
TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4417 TCGA-05-4432 TCGA-05-5420 
       37.02        47.05         8.02        14.93        25.02         1.02 
TCGA-05-5423 TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 
        4.96         8.68        47.61        49.02        28.37        44.61 
TCGA-44-2656 TCGA-44-2668 TCGA-44-3918 TCGA-44-5644 TCGA-44-6144 TCGA-44-6147 
       19.10         8.09         6.44        16.37         0.30         7.76 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-49-4488 
       36.49        16.41         1.64        18.31        18.87        28.57 
TCGA-49-4512 TCGA-49-6761 TCGA-50-5051 TCGA-50-5066 TCGA-50-5933 TCGA-50-5941 
       29.75         0.03        14.96         9.76        77.88         9.37 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-7109 TCGA-55-1596 
       12.26        11.47         3.88        11.05         8.38        45.17 
TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 
        2.86        32.61         0.79        40.70        15.25        48.49 
TCGA-55-6982 TCGA-55-7907 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.71         0.53         0.10        20.65        39.09        37.02 
TCGA-64-5775 TCGA-64-5779 TCGA-67-3771 TCGA-69-7760 TCGA-71-6725 TCGA-73-4670 
        0.10        16.67         1.97         5.06         2.01         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 TCGA-78-7152 
        1.32         4.01         1.25       163.10         5.65        39.48 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
        5.88        40.11         7.04        26.53        31.20         8.02 
TCGA-78-7539 TCGA-78-7542 TCGA-91-6828 TCGA-91-6831 TCGA-91-6847 TCGA-91-7771 
       10.75        10.55         1.22         1.28        26.93         1.02 
TCGA-97-7547 TCGA-97-7553 TCGA-97-7938 
       47.18        43.76         0.59 

$`8Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 
       20.05         2.96         8.98        29.95        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5425 TCGA-05-5429 
       26.01        25.02        24.00        15.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         5.95        85.32        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 
       35.28        11.64         5.19        26.30        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
       17.39         3.39        15.78        13.15         3.19        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 
        8.32         6.21         4.60         3.48         6.84         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         3.12         5.42         2.70        63.72        32.45 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        9.80         5.33         5.03        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
       12.99         4.93        20.48        71.47        48.82        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-6590 TCGA-50-6592 TCGA-50-6594 
        8.45        15.12         4.44        42.31        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 
        6.21        33.37         0.72        35.11        31.89        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-6543 TCGA-55-6968 TCGA-55-6971 TCGA-55-6975 
       38.73        48.62         0.07        42.48         0.92         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6983 TCGA-55-6984 
        5.46         7.76         2.20        45.34        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 
        3.12         1.32         1.28         1.02         0.79         0.62 
TCGA-55-7910 TCGA-55-7911 TCGA-64-1676 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 
        6.48         0.69        56.81        55.40        44.38        83.84 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       30.44        37.64         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 
        0.59         0.89         0.69        13.87         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.61         4.24        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       15.35        27.16        19.27        20.58        35.93        21.86 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7160 TCGA-78-7162 
       24.99        19.50        38.50        32.09        22.29       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 
      223.96         8.48        88.11        53.33        28.96        32.68 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 
        0.36         0.89         0.23        41.33         0.03         1.15 
TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        0.36         4.18         0.92         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 TCGA-97-7554 TCGA-97-7937 
        0.07         5.36        31.66        48.53         8.65         5.95 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.03              0.03 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           163.10            223.96 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           11.470            13.675 
[1] "0.0 - 163.1 (11.5)" "0.0 - 224.0 (13.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     43   46
  8Q GAIN WILD-TYPE  111   85
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              43               111
  MALE                46                85
D16V4, continuous
D16V5, multiclass
D16V6, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1              22                57
  T2              55               113
  T3               7                15
  T4               5                10
D16V7, multiclass
       clus
vv      8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0                 49               120
  N1                 17                41
  N2+N3              20                32
D16V8, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0              58               142
  M1               6                10
  MX              24                38
D16V9, multiclass
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  I                41               106
  II               21                40
  III              20                36
  IV                6                10
D16V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      3   86
  8Q GAIN WILD-TYPE   10  186
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO                3                10
  YES              86               186
D16V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     12   77
  8Q GAIN WILD-TYPE   31  165
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO               12                31
  YES              77               165

Clustering(17) Variable = 9p gain mutation analysis
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED     5   1
  9P GAIN WILD-TYPE 165  80
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                6               245 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                1                80 
$`9P GAIN MUTATED`
TCGA-05-4427 TCGA-55-7903 TCGA-64-5775 TCGA-78-7163 TCGA-91-6831 TCGA-95-7039 
       26.01         0.62         0.10       223.96         1.28         1.12 

$`9P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
        8.38        35.11        31.89        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7907 
        3.12         1.32         1.28         1.02         0.79         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        6.48         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       55.40        37.02        44.38        83.84        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       37.64         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.25       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 
       10.75        28.96        10.55        32.68         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 
        0.23         1.22        41.33         0.03         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.07         5.36        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.10              0.03 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           223.96            163.10 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             1.20             13.61 
[1] "0.1 - 224.0 (1.2)"  "0.0 - 163.1 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "3.5"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      2    5
  9P GAIN WILD-TYPE  152  126
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE               2               152
  MALE                 5               126
D17V4, continuous
D17V5, multiclass
D17V6, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1               1                78
  T2               4               164
  T3               1                21
  T4               1                14
D17V7, multiclass
       clus
vv      9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0                  6               163
  N1                  1                57
  N2+N3               0                52
D17V8, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0               4               196
  M1               0                16
  MX               3                59
D17V9, multiclass
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  I                 4               143
  II                2                59
  III               1                55
  IV                0                16
D17V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      0    7
  9P GAIN WILD-TYPE   13  265
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                0                13
  YES               7               265
D17V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      0    7
  9P GAIN WILD-TYPE   43  235
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                0                43
  YES               7               235

Clustering(18) Variable = 9q gain mutation analysis
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED     3   0
  9Q GAIN WILD-TYPE 167  81
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                3               248 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                0                81 
$`9Q GAIN MUTATED`
TCGA-05-4427 TCGA-78-7163 TCGA-91-6836 
       26.01       223.96         0.36 

$`9Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
        8.38        35.11        31.89        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 
        3.12         1.32         1.28         1.02         0.79         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.53         6.48         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        37.64         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
        7.04       104.15         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.28         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 
        9.76         4.18         1.12         0.07         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.36              0.03 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           223.96            163.10 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
            26.01             13.15 
[1] "0.4 - 224.0 (26.0)" "0.0 - 163.1 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr="     "3.5e+07"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      2    1
  9Q GAIN WILD-TYPE  152  130
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE               2               152
  MALE                 1               130
D18V4, continuous
D18V5, multiclass
D18V6, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1               0                79
  T2               3               165
  T3               0                22
  T4               0                15
D18V7, multiclass
       clus
vv      9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0                  2               167
  N1                  1                57
  N2+N3               0                52
D18V8, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0               2               198
  M1               0                16
  MX               1                61
D18V9, multiclass
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  I                 2               145
  II                1                60
  III               0                56
  IV                0                16
D18V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      0    3
  9Q GAIN WILD-TYPE   13  269
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                0                13
  YES               3               269
D18V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      0    3
  9Q GAIN WILD-TYPE   43  239
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                0                43
  YES               3               239

Clustering(19) Variable = 10p gain mutation analysis
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    20   8
  10P GAIN WILD-TYPE 150  73
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                28                223 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 8                 73 
$`10P GAIN MUTATED`
TCGA-05-4405 TCGA-05-4427 TCGA-05-4430 TCGA-38-4632 TCGA-44-7671 TCGA-49-4487 
       20.05        26.01        25.02        44.61        17.59        28.11 
TCGA-50-5051 TCGA-50-5068 TCGA-50-5946 TCGA-50-7109 TCGA-55-6970 TCGA-55-6972 
       14.96        49.28        11.47         8.38        15.25        48.49 
TCGA-55-7910 TCGA-64-1678 TCGA-69-7763 TCGA-71-6725 TCGA-73-4670 TCGA-73-4677 
        6.48        39.09        22.68         2.01         0.46         1.25 
TCGA-78-7149 TCGA-78-7154 TCGA-78-7155 TCGA-78-7161 TCGA-78-7542 TCGA-78-7633 
       35.93        19.50        38.50         7.04        10.55        32.68 
TCGA-86-7711 TCGA-91-6836 TCGA-95-7567 TCGA-97-7937 
        0.89         0.36         5.36         5.95 

$`10P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        30.02        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 
       49.02        28.37        35.28        11.64         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.21         4.60         3.48        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
       63.72        32.45        36.49        16.41         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 
        5.03         1.64        18.31        18.87        17.46        13.74 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       48.82        25.81         9.76         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       12.16         6.21        33.37         0.72        35.11        31.89 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 
       32.61         0.79        42.48        40.70         0.92         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.62         0.53         0.69         0.10        56.81        20.65 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        37.64         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        6.12        13.61         4.24        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 
       20.28        15.35         1.32         4.01       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
        5.65        19.27        20.58        21.86        39.48        24.99 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 
       32.09         5.88        40.11        22.29       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-86-7701 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       10.75        28.96         0.36         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-97-7546 
        1.02         9.76         4.18         1.12         0.07        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 
       47.18        48.53        43.76         8.65         0.59         0.72 
TCGA-99-7458 
        8.22 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.36               0.03 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             49.28             223.96 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             16.42              12.99 
[1] "0.4 - 49.3 (16.4)"  "0.0 - 224.0 (13.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED     14   18
  10P GAIN WILD-TYPE  140  113
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE               14                140
  MALE                 18                113
D19V4, continuous
D19V5, multiclass
D19V6, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1                6                 73
  T2               23                145
  T3                2                 20
  T4                1                 14
D19V7, multiclass
       clus
vv      10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0                  24                145
  N1                   5                 53
  N2+N3                3                 49
D19V8, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0               24                176
  M1                2                 14
  MX                6                 56
D19V9, multiclass
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  I                 20                127
  II                 6                 55
  III                4                 52
  IV                 2                 14
D19V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      0   32
  10P GAIN WILD-TYPE   13  240
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 0                 13
  YES               32                240
D19V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      4   28
  10P GAIN WILD-TYPE   39  214
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 4                 39
  YES               28                214

Clustering(20) Variable = 10q gain mutation analysis
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED    13   4
  10Q GAIN WILD-TYPE 157  77
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                17                234 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 4                 77 
$`10Q GAIN MUTATED`
TCGA-05-4427 TCGA-05-4430 TCGA-44-6144 TCGA-44-7671 TCGA-49-4487 TCGA-50-5051 
       26.01        25.02         0.30        17.59        28.11        14.96 
TCGA-50-5946 TCGA-55-6970 TCGA-55-6972 TCGA-69-7763 TCGA-71-6725 TCGA-73-4670 
       11.47        15.25        48.49        22.68         2.01         0.46 
TCGA-73-4675 TCGA-73-4677 TCGA-78-7149 TCGA-78-7154 TCGA-78-7161 
        1.32         1.25        35.93        19.50         7.04 

$`10Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 
        8.98        29.95        30.02        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       13.74        76.21        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 
       15.12         9.37         4.44        12.26        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
        8.38        35.11        31.89        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       40.70         0.92         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.28         1.02         0.79         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        0.69         0.10        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       37.64         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.61         4.24        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       15.35         4.01       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 
       20.58        21.86        39.48        24.99        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
        5.88        40.11        22.29       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       28.96        10.55        32.68         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.12         0.07         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              0.30               0.03 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             48.49             223.96 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             15.25              13.07 
[1] "0.3 - 48.5 (15.2)"  "0.0 - 224.0 (13.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      8   11
  10Q GAIN WILD-TYPE  146  120
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                8                146
  MALE                 11                120
D20V4, continuous
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-73-4659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7714 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
D20V5, multiclass
D20V6, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                5                 74
  T2               10                158
  T3                3                 19
  T4                1                 14
D20V7, multiclass
       clus
vv      10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0                  14                155
  N1                   2                 56
  N2+N3                3                 49
D20V8, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0               16                184
  M1                1                 15
  MX                2                 60
D20V9, multiclass
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  I                 11                136
  II                 2                 59
  III                5                 51
  IV                 1                 15
D20V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      0   19
  10Q GAIN WILD-TYPE   13  253
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 0                 13
  YES               19                253
D20V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      2   17
  10Q GAIN WILD-TYPE   41  225
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 2                 41
  YES               17                225

Clustering(21) Variable = 11p gain mutation analysis
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    16   6
  11P GAIN WILD-TYPE 154  75
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                22                229 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 6                 75 
$`11P GAIN MUTATED`
TCGA-05-4415 TCGA-05-4420 TCGA-05-4432 TCGA-05-5423 TCGA-05-5429 TCGA-38-4628 
        2.96        29.95        25.02         4.96         0.99        49.02 
TCGA-38-4629 TCGA-44-5645 TCGA-44-6779 TCGA-44-7660 TCGA-44-7669 TCGA-55-1594 
       28.37         6.84        16.41         5.33        18.87        38.73 
TCGA-55-6543 TCGA-55-6712 TCGA-64-5775 TCGA-64-5779 TCGA-67-6215 TCGA-71-6725 
        0.07         0.79         0.10        16.67         0.89         2.01 
TCGA-73-4662 TCGA-78-7163 TCGA-95-7043 TCGA-97-7554 
       29.95       223.96         0.07         8.65 

$`11P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02        20.05        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        1.02         2.96         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 TCGA-38-4631 
        8.68        47.61        85.32        37.71        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       16.37         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
        5.42         2.70        63.72        32.45        36.49         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        5.03         1.64        18.31        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 
       33.37         0.72         8.38        35.11        31.89        23.05 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 
       48.62        45.17         2.86        32.61        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 
        1.32         1.28         1.02         0.79         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        6.48         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5781 
       55.40        37.02        44.38        83.84        30.44        37.64 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        4.24        52.57        23.38        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
        7.04       104.15         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 
        1.02         9.76         4.18         1.12         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       47.18        48.53        43.76         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.07               0.03 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            223.96             163.10 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             7.745             13.610 
[1] "0.1 - 224.0 (7.7)"  "0.0 - 163.1 (13.6)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     10   13
  11P GAIN WILD-TYPE  144  118
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE               10                144
  MALE                 13                118
D21V4, continuous
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 23 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-73-4659 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-75-5122         TCGA-86-7701         TCGA-86-7711 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-91-6849 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-7348         TCGA-99-7458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
D21V5, multiclass
D21V6, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1                5                 74
  T2               13                155
  T3                2                 20
  T4                2                 13
D21V7, multiclass
       clus
vv      11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0                  11                158
  N1                   6                 52
  N2+N3                5                 47
D21V8, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0               15                185
  M1                1                 15
  MX                5                 57
D21V9, multiclass
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  I                  8                139
  II                 6                 55
  III                6                 50
  IV                 1                 15
D21V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      1   22
  11P GAIN WILD-TYPE   12  250
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 1                 12
  YES               22                250
D21V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      4   19
  11P GAIN WILD-TYPE   39  223
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 4                 39
  YES               19                223

Clustering(22) Variable = 11q gain mutation analysis
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    23   9
  11Q GAIN WILD-TYPE 147  72
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                32                219 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 9                 72 
$`11Q GAIN MUTATED`
TCGA-05-4420 TCGA-05-4432 TCGA-05-5423 TCGA-05-5429 TCGA-38-4628 TCGA-38-4629 
       29.95        25.02         4.96         0.99        49.02        28.37 
TCGA-44-2656 TCGA-44-5645 TCGA-44-6774 TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 
       19.10         6.84         5.42        16.41         5.33         1.64 
TCGA-44-7669 TCGA-50-5933 TCGA-53-7624 TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 
       18.87        77.88        35.11        38.73        45.17         0.07 
TCGA-55-6712 TCGA-55-7910 TCGA-64-5775 TCGA-64-5779 TCGA-67-6215 TCGA-71-6725 
        0.79         6.48         0.10        16.67         0.89         2.01 
TCGA-73-4666 TCGA-73-4676 TCGA-78-7154 TCGA-78-7155 TCGA-78-7163 TCGA-78-7535 
       20.28         4.01        19.50        38.50       223.96        31.20 
TCGA-91-6848 TCGA-95-7043 
        4.18         0.07 

$`11Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
        8.98        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       15.02         1.02         2.96         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 
        5.95         8.68        47.61        85.32        37.71        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 
       11.64        44.61         5.19        26.30        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       16.37         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 
        2.70        63.72        32.45        36.49         9.80         5.03 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.31        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 
       31.89        23.05        48.62         2.86        32.61        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 
        3.12         1.32         1.28         1.02         0.79         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.53         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5781 
       55.40        37.02        44.38        83.84        30.44        37.64 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        4.24        52.57        23.38        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        1.32         1.25       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 
       20.58        35.93        21.86        39.48        24.99        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 
        5.88        40.11        22.29         7.04       104.15         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       88.11        26.53         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       10.55        32.68         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 
        0.92         1.02         9.76         4.18         1.12         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.07               0.03 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            223.96             163.10 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             16.54              13.15 
[1] "0.1 - 224.0 (16.5)" "0.0 - 163.1 (13.2)"
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
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        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
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        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
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        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
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        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
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        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
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        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
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        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
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        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
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        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
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        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
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        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     13   21
  11Q GAIN WILD-TYPE  141  110
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE               13                141
  MALE                 21                110
D22V4, continuous
D22V5, multiclass
D22V6, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1                6                 73
  T2               22                146
  T3                3                 19
  T4                2                 13
D22V7, multiclass
       clus
vv      11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0                  18                151
  N1                   8                 50
  N2+N3                7                 45
D22V8, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0               22                178
  M1                3                 13
  MX                7                 55
D22V9, multiclass
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  I                 12                135
  II                 9                 52
  III                8                 48
  IV                 3                 13
D22V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      2   32
  11Q GAIN WILD-TYPE   11  240
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 2                 11
  YES               32                240
D22V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      5   29
  11Q GAIN WILD-TYPE   38  213
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 5                 38
  YES               29                213

Clustering(23) Variable = 12p gain mutation analysis
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED    23   9
  12P GAIN WILD-TYPE 147  72
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                32                219 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 9                 72 
$`12P GAIN MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4432 TCGA-44-2657 
       37.02        14.93         8.98        29.95        25.02        13.15 
TCGA-44-3918 TCGA-44-5643 TCGA-44-5644 TCGA-44-7669 TCGA-44-7670 TCGA-49-4510 
        6.44         3.48        16.37        18.87        17.46        29.46 
TCGA-49-4512 TCGA-50-5072 TCGA-50-5941 TCGA-55-1594 TCGA-55-1595 TCGA-55-6712 
       29.75         8.05         9.37        38.73        48.62         0.79 
TCGA-55-6981 TCGA-55-6985 TCGA-55-7728 TCGA-55-7910 TCGA-64-1678 TCGA-64-5775 
       45.34        40.54         0.79         6.48        39.09         0.10 
TCGA-67-3774 TCGA-73-4670 TCGA-73-4675 TCGA-78-7145 TCGA-78-7154 TCGA-78-7220 
        0.59         0.46         1.32        27.16        19.50        26.53 
TCGA-86-7713 TCGA-91-6836 
        0.23         0.36 

$`12P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4424 TCGA-05-4426 
       47.05         8.02        20.05         2.96        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 
       35.28        11.64        44.61         5.19        26.30        18.87 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 
        8.09        10.22         8.32         6.21         4.60         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7671 TCGA-44-7672 
        5.33         5.03         1.64        18.31        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       14.07        32.84         8.81        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81         9.76        49.28         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       31.89        23.05        45.17         2.86         0.07        32.61 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        5.46         7.76         2.20        32.71        60.03        24.99 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.32         1.28         1.02         0.62         0.53         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
        0.10        56.81        20.65        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84        30.44        16.67        37.64         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        1.97         0.59         2.04         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 
       52.57        23.38        29.95        20.28        15.35         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
        1.25       163.10         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       21.86        39.48        24.99        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       88.11        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 
       10.55        32.68         0.36         0.89         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         1.12         0.07         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.10               0.03 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             48.62             223.96 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             15.65              12.99 
[1] "0.1 - 48.6 (15.7)"  "0.0 - 224.0 (13.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     23   16
  12P GAIN WILD-TYPE  131  115
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               23                131
  MALE                 16                115
D23V4, continuous
[1] "Remove cluster labels:" "12P GAIN MUTATED"      
clus
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 2                 23 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-86-7701 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7714         TCGA-91-6849 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7348         TCGA-99-7458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
D23V5, multiclass
D23V6, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1                6                 73
  T2               25                143
  T3                5                 17
  T4                3                 12
D23V7, multiclass
       clus
vv      12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0                  17                152
  N1                  10                 48
  N2+N3               11                 41
D23V8, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0               28                172
  M1                2                 14
  MX                8                 54
D23V9, multiclass
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  I                 13                134
  II                10                 51
  III               13                 43
  IV                 2                 14
D23V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      1   38
  12P GAIN WILD-TYPE   12  234
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 1                 12
  YES               38                234
D23V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      5   34
  12P GAIN WILD-TYPE   38  208
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 5                 38
  YES               34                208

Clustering(24) Variable = 12q gain mutation analysis
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    19   6
  12Q GAIN WILD-TYPE 151  75
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                25                226 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 6                 75 
$`12Q GAIN MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4432 TCGA-44-3918 
       37.02        14.93         8.98        29.95        25.02         6.44 
TCGA-44-5644 TCGA-44-7669 TCGA-44-7670 TCGA-49-4510 TCGA-49-4512 TCGA-50-5072 
       16.37        18.87        17.46        29.46        29.75         8.05 
TCGA-50-5941 TCGA-55-1594 TCGA-55-1595 TCGA-55-7728 TCGA-55-7910 TCGA-64-1678 
        9.37        38.73        48.62         0.79         6.48        39.09 
TCGA-64-5779 TCGA-67-3774 TCGA-73-4670 TCGA-73-4675 TCGA-78-7145 TCGA-78-7220 
       16.67         0.59         0.46         1.32        27.16        26.53 
TCGA-91-6836 
        0.36 

$`12Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4424 TCGA-05-4426 
       47.05         8.02        20.05         2.96        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 
       35.28        11.64        44.61         5.19        26.30        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 
       35.54        46.72        14.07        32.84         8.81        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 
        8.38        35.11        31.89        23.05        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 
        1.28         1.02         0.62         0.53         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       56.81        20.65        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        37.64         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        0.59         2.04         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 
        6.12        22.68        13.61         4.24         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 TCGA-73-4677 
       23.38        29.95        20.28        15.35         4.01         1.25 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
      163.10         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       88.11        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       10.55        32.68         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 
       41.33         0.03         1.28         1.15        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        0.92         1.02         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.36               0.03 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             48.62             223.96 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            16.670             12.825 
[1] "0.4 - 48.6 (16.7)"  "0.0 - 224.0 (12.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
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"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
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        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
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        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
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        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
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        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
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        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
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        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
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        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
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        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
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        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
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  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     19   12
  12Q GAIN WILD-TYPE  135  119
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE               19                135
  MALE                 12                119
D24V4, continuous
[1] "Remove cluster labels:" "12Q GAIN MUTATED"      
clus
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 1                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-86-7701 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7714 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
D24V5, multiclass
D24V6, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1                4                 75
  T2               21                147
  T3                4                 18
  T4                2                 13
D24V7, multiclass
       clus
vv      12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0                  14                155
  N1                   8                 50
  N2+N3                9                 43
D24V8, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0               23                177
  M1                2                 14
  MX                5                 57
D24V9, multiclass
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  I                 10                137
  II                 9                 52
  III               10                 46
  IV                 2                 14
D24V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      0   31
  12Q GAIN WILD-TYPE   13  241
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 0                 13
  YES               31                241
D24V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      5   26
  12Q GAIN WILD-TYPE   38  216
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 5                 38
  YES               26                216

Clustering(25) Variable = 13q gain mutation analysis
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED     8   4
  13Q GAIN WILD-TYPE 162  77
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                12                239 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 4                 77 
$`13Q GAIN MUTATED`
TCGA-38-4631 TCGA-44-7671 TCGA-53-7624 TCGA-55-7910 TCGA-64-1678 TCGA-64-1680 
       11.64        17.59        35.11         6.48        39.09        37.02 
TCGA-67-3771 TCGA-73-4677 TCGA-78-7149 TCGA-78-7220 TCGA-78-7537 TCGA-97-7547 
        1.97         1.25        35.93        26.53        53.33        47.18 

$`13Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       18.87        17.46        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       31.89        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.28         1.02         0.79         0.62         0.53         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 
        0.10        56.81        20.65        55.40        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        37.64         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        1.32         4.01       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       20.58        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 
      223.96         8.48        88.11        31.20         8.02        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       28.96        10.55        32.68         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        1.12         0.07         5.36        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              1.25               0.03 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             53.33             223.96 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             30.82              12.99 
[1] "1.2 - 53.3 (30.8)"  "0.0 - 224.0 (13.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      8    7
  13Q GAIN WILD-TYPE  146  124
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                8                146
  MALE                  7                124
D25V4, continuous
[1] "Remove cluster labels:" "13Q GAIN MUTATED"      
clus
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 1                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-86-7701 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7714 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
D25V5, multiclass
D25V6, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                1                 78
  T2               13                155
  T3                0                 22
  T4                1                 14
D25V7, multiclass
       clus
vv      13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0                  11                158
  N1                   1                 57
  N2+N3                3                 49
D25V8, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0               12                188
  M1                2                 14
  MX                1                 61
D25V9, multiclass
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  I                  7                140
  II                 3                 58
  III                3                 53
  IV                 2                 14
D25V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      1   14
  13Q GAIN WILD-TYPE   12  258
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 1                 12
  YES               14                258
D25V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      3   12
  13Q GAIN WILD-TYPE   40  230
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 3                 40
  YES               12                230

Clustering(26) Variable = 14q gain mutation analysis
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    16  11
  14Q GAIN WILD-TYPE 154  70
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                27                224 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                11                 70 
$`14Q GAIN MUTATED`
TCGA-05-4390 TCGA-35-5375 TCGA-38-4629 TCGA-44-2659 TCGA-44-6147 TCGA-44-6779 
       37.02         8.68        28.37        17.39         7.76        16.41 
TCGA-49-4486 TCGA-49-4488 TCGA-50-6590 TCGA-50-6591 TCGA-50-6594 TCGA-50-7109 
       76.21        28.57        42.31         3.88        12.16         8.38 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6970 TCGA-55-6971 TCGA-55-7910 TCGA-64-5774 
        2.86         0.07        15.25         0.92         6.48        83.84 
TCGA-64-5775 TCGA-71-6725 TCGA-73-4677 TCGA-78-7159 TCGA-78-7161 TCGA-78-7536 
        0.10         2.01         1.25        40.11         7.04         8.02 
TCGA-91-6828 TCGA-91-6836 TCGA-91-6847 
        1.22         0.36        26.93 

$`14Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
       26.30        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.21         4.60         3.48        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4487 
       18.31        18.87        17.46        17.59        13.74        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
        4.44        12.26        11.47        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
       33.37         0.72        35.11        31.89        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
       48.62        45.17        32.61         0.79        42.48        40.70 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 
        1.02         0.79         0.62         0.53         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        37.64         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 
        5.06         6.12        22.68        13.61         4.24        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        4.01       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       32.09         5.88        22.29       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       88.11        26.53        31.20        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6829 
       10.55        32.68         0.36         0.89         0.23        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        0.03         1.28         1.15         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 
        9.76         4.18         1.12         0.07         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.07               0.03 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             83.84             223.96 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             8.380             13.805 
[1] "0.1 - 83.8 (8.4)"   "0.0 - 224.0 (13.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
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        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
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        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
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        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
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        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
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        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     21   12
  14Q GAIN WILD-TYPE  133  119
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE               21                133
  MALE                 12                119
D26V4, continuous
D26V5, multiclass
D26V6, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1               12                 67
  T2               17                151
  T3                3                 19
  T4                1                 14
D26V7, multiclass
       clus
vv      14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0                  22                147
  N1                   5                 53
  N2+N3                4                 48
D26V8, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0               22                178
  M1                1                 15
  MX                9                 53
D26V9, multiclass
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  I                 19                128
  II                 7                 54
  III                5                 51
  IV                 1                 15
D26V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      1   32
  14Q GAIN WILD-TYPE   12  240
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 1                 12
  YES               32                240
D26V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      3   30
  14Q GAIN WILD-TYPE   40  212
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 3                 40
  YES               30                212

Clustering(27) Variable = 15q gain mutation analysis
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED     8   1
  15Q GAIN WILD-TYPE 162  80
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 9                242 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 1                 80 
$`15Q GAIN MUTATED`
TCGA-05-4420 TCGA-44-5645 TCGA-50-5944 TCGA-55-1594 TCGA-71-6725 TCGA-73-4670 
       29.95         6.84        12.26        38.73         2.01         0.46 
TCGA-78-7149 TCGA-78-7220 TCGA-78-7540 
       35.93        26.53        28.96 

$`15Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       16.37         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       31.89        23.05        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        1.02         0.79         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
        0.10        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        37.64 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.61         4.24        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
       15.35         1.32         4.01         1.25       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
        5.65        19.27        20.58        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 
        7.04       104.15       223.96         8.48        88.11        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 
        8.02        53.33        10.75        10.55        32.68         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.89         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 
        9.76         4.18         1.12         0.07         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.46               0.03 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             38.73             223.96 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             26.53              13.15 
[1] "0.5 - 38.7 (26.5)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "2.9"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      6    4
  15Q GAIN WILD-TYPE  148  127
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE                6                148
  MALE                  4                127
D27V4, continuous
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 1                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-73-4659 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-86-7701 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7714 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
D27V5, multiclass
D27V6, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1                2                 77
  T2                6                162
  T3                0                 22
  T4                1                 14
D27V7, multiclass
       clus
vv      15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0                   7                162
  N1                   0                 58
  N2+N3                2                 50
D27V8, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0                7                193
  M1                1                 15
  MX                1                 61
D27V9, multiclass
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  I                  6                141
  II                 0                 61
  III                3                 53
  IV                 1                 15
D27V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      0   10
  15Q GAIN WILD-TYPE   13  262
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 0                 13
  YES               10                262
D27V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      1    9
  15Q GAIN WILD-TYPE   42  233
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 1                 42
  YES                9                233

Clustering(28) Variable = 16p gain mutation analysis
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    23  13
  16P GAIN WILD-TYPE 147  68
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                36                215 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                13                 68 
$`16P GAIN MUTATED`
TCGA-05-4249 TCGA-05-4390 TCGA-05-5423 TCGA-38-4628 TCGA-38-4629 TCGA-44-2665 
       38.07        37.02         4.96        49.02        28.37        13.15 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6147 TCGA-44-6775 TCGA-44-6779 TCGA-44-7669 
       16.37         6.84         7.76         2.70        16.41        18.87 
TCGA-49-4490 TCGA-49-4505 TCGA-49-4512 TCGA-50-5933 TCGA-55-6980 TCGA-55-7281 
       12.66        14.07        29.75        77.88         2.20         0.59 
TCGA-55-7573 TCGA-55-7910 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-67-3772 
        0.13         6.48        55.40        37.02        44.38         0.59 
TCGA-67-6217 TCGA-69-7760 TCGA-73-4668 TCGA-73-4675 TCGA-78-7152 TCGA-78-7154 
       13.87         5.06        15.35         1.32        39.48        19.50 
TCGA-78-7156 TCGA-78-7163 TCGA-78-7535 TCGA-78-7542 TCGA-97-7546 TCGA-97-7547 
       32.09       223.96        31.20        10.55        31.66        47.18 

$`16P GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 
       35.28        11.64        44.61         5.19        26.30        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 
       19.10        13.15        17.39         3.39        15.78         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
        3.48         0.30         3.35         9.93         3.12         5.42 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        36.49         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        1.64        18.31        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.11        28.57        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 
       48.49         3.88         5.46         7.76        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 
       60.03        24.99        40.54        71.05        38.47         1.12 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 
        3.12         1.32         1.28         1.02         0.79         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.53         0.69         0.10        56.81        20.65        39.09 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        37.64         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         1.97         2.04         0.59         0.89         0.69 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 
        6.12        22.68        13.61         4.24         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       23.38        29.95        20.28         0.46         4.01         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7153 TCGA-78-7155 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       21.86        24.99        38.50         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
        7.04       104.15         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 
       53.33        10.75        28.96        32.68         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7552 TCGA-97-7553 
        4.18         1.12         0.07         5.36        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.13               0.03 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            223.96             163.10 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             16.39              12.13 
[1] "0.1 - 224.0 (16.4)" "0.0 - 163.1 (12.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     21   19
  16P GAIN WILD-TYPE  133  112
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE               21                133
  MALE                 19                112
D28V4, continuous
D28V5, multiclass
D28V6, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1                8                 71
  T2               24                144
  T3                5                 17
  T4                2                 13
D28V7, multiclass
       clus
vv      16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0                  21                148
  N1                  10                 48
  N2+N3                7                 45
D28V8, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0               27                173
  M1                3                 13
  MX                7                 55
D28V9, multiclass
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  I                 19                128
  II                11                 50
  III                6                 50
  IV                 3                 13
D28V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      2   38
  16P GAIN WILD-TYPE   11  234
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 2                 11
  YES               38                234
D28V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      9   31
  16P GAIN WILD-TYPE   34  211
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 9                 34
  YES               31                211

Clustering(29) Variable = 16q gain mutation analysis
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    12   9
  16Q GAIN WILD-TYPE 158  72
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                21                230 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 9                 72 
$`16Q GAIN MUTATED`
TCGA-05-4249 TCGA-05-5423 TCGA-38-4629 TCGA-44-2665 TCGA-44-5645 TCGA-44-6147 
       38.07         4.96        28.37        13.15         6.84         7.76 
TCGA-44-6779 TCGA-49-4505 TCGA-49-4512 TCGA-50-5933 TCGA-55-6980 TCGA-64-1676 
       16.41        14.07        29.75        77.88         2.20        56.81 
TCGA-64-1681 TCGA-67-6217 TCGA-69-7760 TCGA-73-4668 TCGA-78-7145 TCGA-78-7154 
       44.38        13.87         5.06        15.35        27.16        19.50 
TCGA-78-7163 TCGA-78-7542 TCGA-97-7547 
      223.96        10.55        47.18 

$`16Q GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48        16.37         0.30         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 
       48.49         3.88         5.46         7.76        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        0.79         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       20.65        39.09        55.40        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        37.64         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7761 
        0.59         2.04         0.59         0.89         0.69         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
      163.10         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       39.48        24.99        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
       22.29         7.04       104.15         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 
       31.20         8.02        53.33        10.75        28.96        32.68 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         1.12         0.07         5.36 
TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       31.66        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              2.20               0.03 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            223.96             163.10 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             16.41              12.21 
[1] "2.2 - 224.0 (16.4)" "0.0 - 163.1 (12.2)"
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        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
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        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
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        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
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        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
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        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
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        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
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        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
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        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
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        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
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        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
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        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
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        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
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        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
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        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
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        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
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        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
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        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
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        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
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        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
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        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
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        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
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        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
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        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
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        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
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        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
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        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
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        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
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        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
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        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
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        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
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        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
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        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
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        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
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        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
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        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
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        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
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        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
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        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
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        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     12   14
  16Q GAIN WILD-TYPE  142  117
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE               12                142
  MALE                 14                117
D29V4, continuous
D29V5, multiclass
D29V6, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1                4                 75
  T2               16                152
  T3                3                 19
  T4                2                 13
D29V7, multiclass
       clus
vv      16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0                  14                155
  N1                   7                 51
  N2+N3                3                 49
D29V8, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0               21                179
  M1                1                 15
  MX                3                 59
D29V9, multiclass
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  I                 14                133
  II                 8                 53
  III                3                 53
  IV                 1                 15
D29V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      0   26
  16Q GAIN WILD-TYPE   13  246
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 0                 13
  YES               26                246
D29V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      5   21
  16Q GAIN WILD-TYPE   38  221
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 5                 38
  YES               21                221

Clustering(30) Variable = 17p gain mutation analysis
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED    12   3
  17P GAIN WILD-TYPE 158  78
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                15                236 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 3                 78 
$`17P GAIN MUTATED`
TCGA-05-4382 TCGA-35-5375 TCGA-38-4628 TCGA-44-6148 TCGA-50-5935 TCGA-55-7907 
       19.92         8.68        49.02         3.12        21.47         0.53 
TCGA-64-1680 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-78-7149 TCGA-78-7220 
       37.02        20.28         1.32         4.01        35.93        26.53 
TCGA-86-7713 TCGA-91-6835 TCGA-95-7043 
        0.23         1.15         0.07 

$`17P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 
        0.30         3.35         9.93         7.76         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
       63.72        32.45        36.49        16.41         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 
       33.37         0.72         8.38        35.11        31.89        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.79         0.62         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       20.65        39.09        55.40        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        37.64         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 
       52.57        23.38        29.95        15.35         0.46         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 
      163.10        27.16         5.65        19.27        20.58        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       88.11        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 
       10.55        32.68         0.36         0.89         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 
        1.02         9.76         4.18         1.12         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.07               0.03 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             49.02             223.96 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              8.68              13.38 
[1] "0.1 - 49.0 (8.7)"   "0.0 - 224.0 (13.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      6   10
  17P GAIN WILD-TYPE  148  121
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE                6                148
  MALE                 10                121
D30V4, continuous
D30V5, multiclass
D30V6, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1                5                 74
  T2                9                159
  T3                1                 21
  T4                1                 14
D30V7, multiclass
       clus
vv      17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0                   8                161
  N1                   5                 53
  N2+N3                3                 49
D30V8, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0               11                189
  M1                2                 14
  MX                3                 59
D30V9, multiclass
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  I                  6                141
  II                 4                 57
  III                4                 52
  IV                 2                 14
D30V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      3   13
  17P GAIN WILD-TYPE   10  259
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 3                 10
  YES               13                259
D30V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      3   13
  17P GAIN WILD-TYPE   40  229
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 3                 40
  YES               13                229

Clustering(31) Variable = 17q gain mutation analysis
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    30  13
  17Q GAIN WILD-TYPE 140  68
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                43                208 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                13                 68 
$`17Q GAIN MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4424 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 
        3.98        19.92        30.02        49.02        28.37        44.61 
TCGA-44-3919 TCGA-44-6144 TCGA-44-6148 TCGA-44-6777 TCGA-44-7662 TCGA-44-7667 
        6.21         0.30         3.12        32.45         1.64        18.31 
TCGA-44-7670 TCGA-50-5935 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-55-1595 
       17.46        21.47         3.88        11.05        12.16        48.62 
TCGA-55-5899 TCGA-55-7281 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-64-1680 
        2.86         0.59         0.62         0.53         0.69        37.02 
TCGA-67-6215 TCGA-69-7760 TCGA-71-6725 TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 
        0.89         5.06         2.01        29.95        20.28         1.32 
TCGA-73-4676 TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 TCGA-78-7161 TCGA-78-7220 
        4.01        27.16        19.27        35.93         7.04        26.53 
TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-86-7713 TCGA-91-6835 TCGA-91-6836 
       10.75        10.55        32.68         0.23         1.15         0.36 
TCGA-95-7043 
        0.07 

$`17Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.44         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6774 
       16.37         6.84         3.35         9.93         7.76         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
        2.70        63.72        36.49        16.41         9.80         5.33 
TCGA-44-7661 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
        5.03        18.87        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6595 
        4.44        12.26        11.47        42.31        25.51         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 
       33.37         0.72         8.38        35.11        31.89        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       38.73        45.17         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       40.54        71.05        38.47         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7910 TCGA-55-7914 
        1.32         1.28         1.02         0.79         6.48         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 
       56.81        20.65        39.09        55.40        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        37.64         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 
        1.97         0.59         2.04         0.59         0.69        13.87 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 
        6.12        22.68        13.61         4.24        52.57        23.38 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-78-7143 TCGA-78-7146 TCGA-78-7148 
       15.35         0.46         1.25       163.10         5.65        20.58 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
        5.88        40.11        22.29       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-86-7701 
       88.11        31.20         8.02        53.33        28.96         0.36 
TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6847 
        0.89         1.22        41.33         0.03         1.28        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.07               0.03 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             49.02             223.96 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             10.55              13.94 
[1] "0.1 - 49.0 (10.6)"  "0.0 - 224.0 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     26   22
  17Q GAIN WILD-TYPE  128  109
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE               26                128
  MALE                 22                109
D31V4, continuous
D31V5, multiclass
D31V6, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1               16                 63
  T2               21                147
  T3                8                 14
  T4                3                 12
D31V7, multiclass
       clus
vv      17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0                  30                139
  N1                  11                 47
  N2+N3                6                 46
D31V8, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0               31                169
  M1                7                  9
  MX                9                 53
D31V9, multiclass
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  I                 21                126
  II                12                 49
  III                7                 49
  IV                 7                  9
D31V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      5   43
  17Q GAIN WILD-TYPE    8  229
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 5                  8
  YES               43                229
D31V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      9   39
  17Q GAIN WILD-TYPE   34  203
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 9                 34
  YES               39                203

Clustering(32) Variable = 18p gain mutation analysis
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    12   5
  18P GAIN WILD-TYPE 158  76
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                17                234 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 5                 76 
$`18P GAIN MUTATED`
TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 TCGA-50-6591 TCGA-50-7109 TCGA-55-6970 
       29.95        30.02        25.02         3.88         8.38        15.25 
TCGA-64-5775 TCGA-64-5779 TCGA-69-7764 TCGA-73-4675 TCGA-73-4676 TCGA-78-7147 
        0.10        16.67        13.61         1.32         4.01        19.27 
TCGA-78-7539 TCGA-78-7542 TCGA-86-7713 TCGA-97-7546 TCGA-97-7547 
       10.75        10.55         0.23        31.66        47.18 

$`18P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
        8.98        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 
        6.21        33.37         0.72        35.11        31.89        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        42.48        40.70         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.62         0.53         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        37.64         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        6.12        22.68         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-78-7143 
       29.95        20.28        15.35         0.46         1.25       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16         5.65        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 
       26.53        31.20         8.02        53.33        28.96        32.68 
TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.36         0.89         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7552 
        9.76         4.18         1.12         0.07         5.36        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.10               0.03 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             47.18             223.96 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             13.61              13.15 
[1] "0.1 - 47.2 (13.6)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      8   11
  18P GAIN WILD-TYPE  146  120
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE                8                146
  MALE                 11                120
D32V4, continuous
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 23 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-71-6725 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-75-5122         TCGA-86-7701 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7714         TCGA-91-6849 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7348         TCGA-99-7458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
D32V5, multiclass
D32V6, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1                4                 75
  T2               12                156
  T3                2                 20
  T4                1                 14
D32V7, multiclass
       clus
vv      18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0                  13                156
  N1                   4                 54
  N2+N3                2                 50
D32V8, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0               14                186
  M1                1                 15
  MX                4                 58
D32V9, multiclass
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  I                  9                138
  II                 5                 56
  III                4                 52
  IV                 1                 15
D32V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      1   18
  18P GAIN WILD-TYPE   12  254
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 1                 12
  YES               18                254
D32V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      4   15
  18P GAIN WILD-TYPE   39  227
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 4                 39
  YES               15                227

Clustering(33) Variable = 18q gain mutation analysis
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    11   3
  18Q GAIN WILD-TYPE 159  78
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                14                237 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 3                 78 
$`18Q GAIN MUTATED`
TCGA-05-4390 TCGA-05-4420 TCGA-44-6778 TCGA-50-6591 TCGA-55-6970 TCGA-64-1678 
       37.02        29.95        36.49         3.88        15.25        39.09 
TCGA-64-5779 TCGA-69-7764 TCGA-73-4675 TCGA-73-4676 TCGA-78-7542 TCGA-86-7713 
       16.67        13.61         1.32         4.01        10.55         0.23 
TCGA-97-7546 TCGA-97-7547 
       31.66        47.18 

$`18Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-44-7659 
        5.42         2.70        63.72        32.45        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 
       32.61         0.79        42.48        40.70         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        0.79         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       56.81        20.65        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        37.64         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 
        5.06         6.12        22.68         4.24         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 
       23.38        29.95        20.28        15.35         0.46         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 
       10.75        28.96        32.68         0.36         0.89         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
        0.07         5.36        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.23               0.03 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             47.18             223.96 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             15.96              12.99 
[1] "0.2 - 47.2 (16.0)"  "0.0 - 224.0 (13.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      6    8
  18Q GAIN WILD-TYPE  148  123
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE                6                148
  MALE                  8                123
D33V4, continuous
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 2                 23 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-71-6725 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-75-5122         TCGA-86-7701 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7714         TCGA-91-6849 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-93-7348         TCGA-99-7458 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
D33V5, multiclass
D33V6, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1                3                 76
  T2               10                158
  T3                1                 21
  T4                0                 15
D33V7, multiclass
       clus
vv      18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0                  10                159
  N1                   2                 56
  N2+N3                2                 50
D33V8, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0                9                191
  M1                1                 15
  MX                4                 58
D33V9, multiclass
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  I                  8                139
  II                 2                 59
  III                3                 53
  IV                 1                 15
D33V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      1   13
  18Q GAIN WILD-TYPE   12  259
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 1                 12
  YES               13                259
D33V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      4   10
  18Q GAIN WILD-TYPE   39  232
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 4                 39
  YES               10                232

Clustering(34) Variable = 19p gain mutation analysis
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED     3   1
  19P GAIN WILD-TYPE 167  80
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 4                247 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 1                 80 
$`19P GAIN MUTATED`
TCGA-44-2665 TCGA-50-5935 TCGA-53-7624 TCGA-73-4675 
       13.15        21.47        35.11         1.32 

$`19P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 
       13.15        17.39         3.39        15.78         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       31.89        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.28         1.02         0.79         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        0.69         0.10        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       37.64         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         0.46         4.01         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 
       10.75        28.96        10.55        32.68         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        4.18         1.12         0.07         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              1.32               0.03 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             35.11             223.96 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             17.31              13.15 
[1] "1.3 - 35.1 (17.3)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      3    1
  19P GAIN WILD-TYPE  151  130
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                3                151
  MALE                  1                130
D34V4, continuous
D34V5, multiclass
D34V6, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1                1                 78
  T2                2                166
  T3                1                 21
  T4                0                 15
D34V7, multiclass
       clus
vv      19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0                   2                167
  N1                   2                 56
  N2+N3                0                 52
D34V8, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0                3                197
  M1                1                 15
  MX                0                 62
D34V9, multiclass
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  I                  1                146
  II                 1                 60
  III                1                 55
  IV                 1                 15
D34V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      0    4
  19P GAIN WILD-TYPE   13  268
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 0                 13
  YES                4                268
D34V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      1    3
  19P GAIN WILD-TYPE   42  239
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 1                 42
  YES                3                239

Clustering(35) Variable = 19q gain mutation analysis
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED     8   3
  19Q GAIN WILD-TYPE 162  78
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                11                240 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 3                 78 
$`19Q GAIN MUTATED`
TCGA-35-5375 TCGA-38-4631 TCGA-44-6776 TCGA-50-5935 TCGA-50-6594 TCGA-53-7624 
        8.68        11.64        63.72        21.47        12.16        35.11 
TCGA-55-7907 TCGA-69-7764 TCGA-73-4675 TCGA-91-6830 TCGA-95-7043 
        0.53        13.61         1.32         0.03         0.07 

$`19Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        5.42         2.70        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
       33.37         0.72         8.38        31.89        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.62         6.48         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        37.64         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 
        5.06         6.12        22.68         4.24         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 
       23.38        29.95        20.28        15.35         0.46         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.25       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 
       53.33        10.75        28.96        10.55        32.68         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        0.89         0.23         1.22        41.33         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        4.18         1.12         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.03               0.03 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             63.72             223.96 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            11.640             13.805 
[1] "0.0 - 63.7 (11.6)"  "0.0 - 224.0 (13.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
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        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
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        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      7    4
  19Q GAIN WILD-TYPE  147  127
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE                7                147
  MALE                  4                127
D35V4, continuous
[1] "Remove cluster labels:" "19Q GAIN MUTATED"      
clus
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 1                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-55-7283 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7725         TCGA-55-7910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-86-7701 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7714 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
D35V5, multiclass
D35V6, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1                5                 74
  T2                4                164
  T3                2                 20
  T4                0                 15
D35V7, multiclass
       clus
vv      19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0                   6                163
  N1                   3                 55
  N2+N3                2                 50
D35V8, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0                6                194
  M1                1                 15
  MX                4                 58
D35V9, multiclass
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  I                  5                142
  II                 2                 59
  III                3                 53
  IV                 1                 15
D35V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      0   11
  19Q GAIN WILD-TYPE   13  261
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 0                 13
  YES               11                261
D35V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      0   11
  19Q GAIN WILD-TYPE   43  231
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 0                 43
  YES               11                231

Clustering(36) Variable = 20p gain mutation analysis
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    25  15
  20P GAIN WILD-TYPE 145  66
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                40                211 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                15                 66 
$`20P GAIN MUTATED`
TCGA-05-4250 TCGA-05-4417 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 TCGA-05-5425 
        3.98        14.93        30.02        25.02        25.02         2.96 
TCGA-35-5375 TCGA-38-4628 TCGA-38-4629 TCGA-44-5644 TCGA-44-5645 TCGA-44-6147 
        8.68        49.02        28.37        16.37         6.84         7.76 
TCGA-44-7660 TCGA-44-7669 TCGA-44-7671 TCGA-50-5045 TCGA-50-5931 TCGA-50-5946 
        5.33        18.87        17.59        71.47         8.78        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-55-1592 TCGA-55-5899 TCGA-55-6543 TCGA-55-6969 
       42.31         3.88        23.05         2.86         0.07        40.70 
TCGA-55-6970 TCGA-64-1677 TCGA-64-1678 TCGA-67-3771 TCGA-69-7763 TCGA-71-6725 
       15.25        20.65        39.09         1.97        22.68         2.01 
TCGA-73-4662 TCGA-78-7153 TCGA-78-7155 TCGA-78-7163 TCGA-78-7220 TCGA-78-7536 
       29.95        24.99        38.50       223.96        26.53         8.02 
TCGA-78-7537 TCGA-91-6836 TCGA-91-6847 TCGA-97-7937 
       53.33         0.36        26.93         5.95 

$`20P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        26.01        24.00        15.02         1.02         4.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       85.32        37.71        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         4.60         3.48         0.30         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41         9.80         5.03         1.64        18.31 
TCGA-44-7670 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.46        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6592 
        8.45        15.12         9.37         4.44        12.26        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6642 
       35.11        31.89        38.73        48.62        45.17        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
        0.79        42.48         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 
        3.12         1.32         1.28         1.02         0.79         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1679 
        0.53         6.48         0.69         0.10        56.81        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       37.64         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 
        0.89         0.69        13.87         5.06         6.12        13.61 
TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        4.24        52.57        23.38        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 
       19.27        20.58        35.93        21.86        39.48        19.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
        8.48        88.11        31.20        10.75        28.96        10.55 
TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       32.68         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        0.03         1.28         1.15         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 
        9.76         4.18         1.12         0.07         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 
       47.18        48.53        43.76         8.65         0.59         0.72 
TCGA-99-7458 
        8.22 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.07               0.03 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            223.96             163.10 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             18.23              12.26 
[1] "0.1 - 224.0 (18.2)" "0.0 - 163.1 (12.3)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     23   19
  20P GAIN WILD-TYPE  131  112
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               23                131
  MALE                 19                112
D36V4, continuous
D36V5, multiclass
D36V6, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1               10                 69
  T2               28                140
  T3                3                 19
  T4                0                 15
D36V7, multiclass
       clus
vv      20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0                  28                141
  N1                   7                 51
  N2+N3                5                 47
D36V8, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0               30                170
  M1                1                 15
  MX                8                 54
D36V9, multiclass
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  I                 27                120
  II                 7                 54
  III                6                 50
  IV                 1                 15
D36V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      3   39
  20P GAIN WILD-TYPE   10  233
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 3                 10
  YES               39                233
D36V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      2   40
  20P GAIN WILD-TYPE   41  202
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 2                 41
  YES               40                202

Clustering(37) Variable = 20q gain mutation analysis
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED    28  18
  20Q GAIN WILD-TYPE 142  63
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                46                205 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                18                 63 
$`20Q GAIN MUTATED`
TCGA-05-4250 TCGA-05-4397 TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 
        3.98        24.03        29.95        30.02        25.02        25.02 
TCGA-05-5423 TCGA-05-5425 TCGA-35-5375 TCGA-38-4628 TCGA-38-4629 TCGA-44-5645 
        4.96         2.96         8.68        49.02        28.37         6.84 
TCGA-44-6147 TCGA-44-7660 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-49-4487 
        7.76         5.33        18.87        17.46        17.59        28.11 
TCGA-50-5931 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-55-1592 TCGA-55-1594 
        8.78        11.47        42.31         3.88        23.05        38.73 
TCGA-55-6543 TCGA-55-6969 TCGA-55-6970 TCGA-55-7910 TCGA-64-1677 TCGA-64-1678 
        0.07        40.70        15.25         6.48        20.65        39.09 
TCGA-64-1681 TCGA-64-5774 TCGA-67-3771 TCGA-71-6725 TCGA-78-7153 TCGA-78-7154 
       44.38        83.84         1.97         2.01        24.99        19.50 
TCGA-78-7155 TCGA-78-7163 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-91-6836 
       38.50       223.96        26.53         8.02        53.33         0.36 
TCGA-91-6847 TCGA-91-7771 TCGA-95-7567 TCGA-97-7937 
       26.93         1.02         5.36         5.95 

$`20Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07        19.92        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4426 
        8.02        20.05         2.96        14.93         8.98        26.01 
TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-05-5715 
       26.01        24.00        15.02         1.02         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 
       35.28        11.64        44.61         5.19        26.30        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48        16.37         0.30         3.35         9.93 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7672 
       16.41         9.80         5.03         1.64        18.31        13.74 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
        9.37         4.44        12.26        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       48.62        45.17         2.86        32.61         0.79        42.48 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.28         1.02         0.79         0.62         0.53         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1679 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 
        0.10        56.81        55.40        37.02         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        37.64         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
       22.68        13.61         4.24        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       21.86        39.48        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7539 
        7.04       104.15         8.48        88.11        31.20        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       28.96        10.55        32.68         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6848 
        1.22        41.33         0.03         1.28         1.15         4.18 
TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-97-7546 
        0.92         9.76         4.18         1.12         0.07        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 
       47.18        48.53        43.76         8.65         0.59         0.72 
TCGA-99-7458 
        8.22 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.07               0.03 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            223.96             163.10 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            19.185             12.260 
[1] "0.1 - 224.0 (19.2)" "0.0 - 163.1 (12.3)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     24   25
  20Q GAIN WILD-TYPE  130  106
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               24                130
  MALE                 25                106
D37V4, continuous
D37V5, multiclass
D37V6, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1               10                 69
  T2               33                135
  T3                5                 17
  T4                0                 15
D37V7, multiclass
       clus
vv      20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0                  30                139
  N1                   9                 49
  N2+N3                8                 44
D37V8, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0               37                163
  M1                1                 15
  MX                9                 53
D37V9, multiclass
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  I                 26                121
  II                12                 49
  III                9                 47
  IV                 1                 15
D37V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      1   48
  20Q GAIN WILD-TYPE   12  224
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 1                 12
  YES               48                224
D37V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      3   46
  20Q GAIN WILD-TYPE   40  196
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 3                 40
  YES               46                196

Clustering(38) Variable = 21q gain mutation analysis
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    11  11
  21Q GAIN WILD-TYPE 159  70
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                22                229 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                11                 70 
$`21Q GAIN MUTATED`
TCGA-05-5423 TCGA-38-4628 TCGA-38-6178 TCGA-44-6147 TCGA-49-4488 TCGA-49-4501 
        4.96        49.02         5.19         7.76        28.57        46.72 
TCGA-49-4512 TCGA-50-5941 TCGA-50-6594 TCGA-50-6597 TCGA-50-6673 TCGA-55-7914 
       29.75         9.37        12.16        33.37         0.72         0.10 
TCGA-64-1678 TCGA-64-1680 TCGA-67-3771 TCGA-71-6725 TCGA-73-4677 TCGA-78-7147 
       39.09        37.02         1.97         2.01         1.25        19.27 
TCGA-78-7155 TCGA-78-7163 TCGA-78-7535 TCGA-78-7542 
       38.50       223.96        31.20        10.55 

$`21Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        28.37        35.28        11.64        44.61 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         3.35         9.93         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
       63.72        32.45        36.49        16.41         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 
       13.74        76.21        28.11        12.66        35.54        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 
       11.05         6.21         8.38        35.11        31.89        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-64-1676 
        0.79         0.62         0.53         6.48         0.69        56.81 
TCGA-64-1677 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        55.40        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        37.64         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
       22.68        13.61         4.24        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 
       20.28        15.35         0.46         1.32         4.01       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16         5.65        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       24.99        19.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
        7.04       104.15         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 
       53.33        10.75        28.96        32.68         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        4.18         1.12         0.07         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.10               0.03 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            223.96             163.10 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            15.715             13.150 
[1] "0.1 - 224.0 (15.7)" "0.0 - 163.1 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED     18    8
  21Q GAIN WILD-TYPE  136  123
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE               18                136
  MALE                  8                123
D38V4, continuous
[1] "Remove cluster labels:" "21Q GAIN MUTATED"      
clus
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 2                 23 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-64-1677         TCGA-64-1681 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-73-4659         TCGA-73-4662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4676 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-75-5122         TCGA-86-7701         TCGA-86-7711 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-91-6849 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-93-7348         TCGA-99-7458 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
D38V5, multiclass
D38V6, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                7                 72
  T2               18                150
  T3                1                 21
  T4                0                 15
D38V7, multiclass
       clus
vv      21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0                  13                156
  N1                   6                 52
  N2+N3                6                 46
D38V8, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0               21                179
  M1                1                 15
  MX                3                 59
D38V9, multiclass
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  I                 13                134
  II                 7                 54
  III                5                 51
  IV                 1                 15
D38V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      1   25
  21Q GAIN WILD-TYPE   12  247
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 1                 12
  YES               25                247
D38V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      6   20
  21Q GAIN WILD-TYPE   37  222
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 6                 37
  YES               20                222

Clustering(39) Variable = 22q gain mutation analysis
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED     6   4
  22Q GAIN WILD-TYPE 164  77
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                10                241 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 4                 77 
$`22Q GAIN MUTATED`
TCGA-05-4420 TCGA-38-4625 TCGA-44-7670 TCGA-49-4490 TCGA-50-5931 TCGA-55-1592 
       29.95        47.61        17.46        12.66         8.78        23.05 
TCGA-55-7907 TCGA-73-4675 TCGA-78-7150 TCGA-91-6847 
        0.53         1.32        21.86        26.93 

$`22Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 
       17.59        13.74        76.21        28.11        28.57        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 
       33.37         0.72         8.38        35.11        31.89        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.62         6.48         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        37.64         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        4.01         1.25       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       20.58        35.93        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 
       53.33        10.75        28.96        10.55        32.68         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.89         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.15         0.36         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        4.18         1.12         0.07         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.53               0.03 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             47.61             223.96 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             19.66              13.15 
[1] "0.5 - 47.6 (19.7)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      7    6
  22Q GAIN WILD-TYPE  147  125
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE                7                147
  MALE                  6                125
D39V4, continuous
D39V5, multiclass
D39V6, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1                1                 78
  T2               10                158
  T3                2                 20
  T4                0                 15
D39V7, multiclass
       clus
vv      22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0                   5                164
  N1                   6                 52
  N2+N3                2                 50
D39V8, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0               11                189
  M1                0                 16
  MX                2                 60
D39V9, multiclass
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  I                  5                142
  II                 5                 56
  III                3                 53
  IV                 0                 16
D39V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      1   12
  22Q GAIN WILD-TYPE   12  260
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 1                 12
  YES               12                260
D39V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      4    9
  22Q GAIN WILD-TYPE   39  233
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 4                 39
  YES                9                233

Clustering(40) Variable = Xq gain mutation analysis
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED     9   2
  XQ GAIN WILD-TYPE 161  79
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               11               240 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2                79 
$`XQ GAIN MUTATED`
TCGA-05-4426 TCGA-44-2659 TCGA-50-5933 TCGA-50-7109 TCGA-55-6543 TCGA-55-7907 
       26.01        17.39        77.88         8.38         0.07         0.53 
TCGA-64-1676 TCGA-78-7154 TCGA-78-7539 TCGA-95-7043 TCGA-95-7567 
       56.81        19.50        10.75         0.07         5.36 

$`XQ GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       12.16         6.21        33.37         0.72        35.11        31.89 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 
       23.05        38.73        48.62        45.17         2.86        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 
        0.79         0.62         6.48         0.69         0.10        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        37.64         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 
        8.02        53.33        28.96        10.55        32.68         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.89         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        9.76         4.18         1.12        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.07              0.03 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            77.88            223.96 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            10.75             13.38 
[1] "0.1 - 77.9 (10.8)"  "0.0 - 224.0 (13.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      5    9
  XQ GAIN WILD-TYPE  149  122
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE               5               149
  MALE                 9               122
D40V4, continuous
D40V5, multiclass
D40V6, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1               5                74
  T2               6               162
  T3               2                20
  T4               1                14
D40V7, multiclass
       clus
vv      XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0                  8               161
  N1                  3                55
  N2+N3               3                49
D40V8, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  M0               9               191
  M1               1                15
  MX               3                59
D40V9, multiclass
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  I                 7               140
  II                3                58
  III               2                54
  IV                1                15
D40V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      0   14
  XQ GAIN WILD-TYPE   13  258
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                0                13
  YES              14               258
D40V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      3   11
  XQ GAIN WILD-TYPE   40  231
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                3                40
  YES              11               231

Clustering(41) Variable = 1p loss mutation analysis
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    11   7
  1P LOSS WILD-TYPE 159  74
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               18               233 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                7                74 
$`1P LOSS MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-44-5643 TCGA-44-6144 TCGA-44-7660 TCGA-50-5051 
        3.98         9.96         3.48         0.30         5.33        14.96 
TCGA-50-5935 TCGA-50-5936 TCGA-50-6594 TCGA-50-7109 TCGA-55-6972 TCGA-64-5774 
       21.47         8.45        12.16         8.38        48.49        83.84 
TCGA-73-4677 TCGA-78-7146 TCGA-78-7149 TCGA-78-7153 TCGA-95-7043 TCGA-95-7567 
        1.25         5.65        35.93        24.99         0.07         5.36 

$`1P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 
        8.32         6.44         6.21         4.60        16.37         6.84 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 
       63.72        32.45        36.49        16.41         9.80         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5939 TCGA-50-5941 
        9.27         8.78        35.87        77.88        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       11.05         6.21        33.37         0.72        35.11        31.89 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        0.79         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        37.64         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
        0.46         1.32         4.01       163.10        27.16        19.27 
TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       20.58        21.86        39.48        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 
       10.75        28.96        10.55        32.68         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        4.18         1.12        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.07              0.03 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            83.84            223.96 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            8.415            13.870 
[1] "0.1 - 83.8 (8.4)"   "0.0 - 224.0 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      8   14
  1P LOSS WILD-TYPE  146  117
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE               8               146
  MALE                14               117
D41V4, continuous
D41V5, multiclass
D41V6, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1               5                74
  T2              13               155
  T3               2                20
  T4               2                13
D41V7, multiclass
       clus
vv      1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0                 13               156
  N1                  4                54
  N2+N3               5                47
D41V8, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0              19               181
  M1               0                16
  MX               3                59
D41V9, multiclass
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  I                13               134
  II                1                60
  III               8                48
  IV                0                16
D41V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      1   21
  1P LOSS WILD-TYPE   12  251
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                1                12
  YES              21               251
D41V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      2   20
  1P LOSS WILD-TYPE   41  222
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                2                41
  YES              20               222

Clustering(42) Variable = 1q loss mutation analysis
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED     3   5
  1Q LOSS WILD-TYPE 167  76
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                8               243 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                5                76 
$`1Q LOSS MUTATED`
TCGA-05-4396 TCGA-44-5643 TCGA-50-5935 TCGA-50-5936 TCGA-50-6594 TCGA-50-7109 
        9.96         3.48        21.47         8.45        12.16         8.38 
TCGA-78-7146 TCGA-95-7043 
        5.65         0.07 

$`1Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 
       10.22         8.32         6.44         6.21         4.60        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       35.87        77.88        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
       33.37         0.72        35.11        31.89        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.62         0.53         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        37.64         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
        0.46         1.32         4.01         1.25       163.10        27.16 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       32.68         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 
        0.92         1.02         9.76         4.18         1.12         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.07              0.03 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            21.47            223.96 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            8.415            13.870 
[1] "0.1 - 21.5 (8.4)"   "0.0 - 224.0 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "6.8"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      4    6
  1Q LOSS WILD-TYPE  150  125
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE               4               150
  MALE                 6               125
D42V4, continuous
D42V5, multiclass
D42V6, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T1               3                76
  T2               5               163
  T3               1                21
  T4               1                14
D42V7, multiclass
       clus
vv      1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  N0                  5               164
  N1                  1                57
  N2+N3               4                48
D42V8, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  M0               8               192
  M1               0                16
  MX               2                60
D42V9, multiclass
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  I                 5               142
  II                0                61
  III               5                51
  IV                0                16
D42V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      1    9
  1Q LOSS WILD-TYPE   12  263
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                1                12
  YES               9               263
D42V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      1    9
  1Q LOSS WILD-TYPE   42  233
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                1                42
  YES               9               233

Clustering(43) Variable = 2p loss mutation analysis
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED     2   0
  2P LOSS WILD-TYPE 168  81
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                2               249 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                0                81 
$`2P LOSS MUTATED`
TCGA-44-2665 TCGA-50-7109 
       13.15         8.38 

$`2P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 
       13.15        17.39         3.39        15.78         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       35.11        31.89        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 
        1.32         1.28         1.02         0.79         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        6.48         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        37.64         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 
        6.12        22.68        13.61         4.24         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        4.01         1.25       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         1.12         0.07         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             8.38              0.03 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            13.15            223.96 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           10.765            13.610 
[1] "8.4 - 13.2 (10.8)"  "0.0 - 224.0 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "Remove cluster labels:" "2P LOSS MUTATED"       
clus
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                2               249 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5644        TCGA-44-5645 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-44-7659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7660        TCGA-44-7661        TCGA-44-7662        TCGA-44-7667 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7669        TCGA-44-7670        TCGA-44-7671        TCGA-44-7672 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-53-7624        TCGA-53-7626        TCGA-55-1592        TCGA-55-1594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7727        TCGA-55-7728        TCGA-55-7903        TCGA-55-7907 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-64-1676 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7760 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-78-7143        TCGA-78-7145 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-86-7701        TCGA-86-7711 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6847 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6848        TCGA-91-6849        TCGA-91-7771        TCGA-93-7347 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-93-7348        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7546        TCGA-97-7547        TCGA-97-7552        TCGA-97-7553 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7554        TCGA-97-7937        TCGA-97-7938        TCGA-97-7941 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-99-7458 
"2P LOSS WILD-TYPE" 
D43V2, continuous
[1] "Remove cluster labels:" "2P LOSS MUTATED"       
clus
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                2               252 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5644        TCGA-44-5645 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-44-7659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7660        TCGA-44-7661        TCGA-44-7662        TCGA-44-7667 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7669        TCGA-44-7670        TCGA-44-7671        TCGA-44-7672 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-49-6767        TCGA-50-5044        TCGA-50-5045 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-53-7624        TCGA-53-7626        TCGA-55-1594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-6642        TCGA-55-6968        TCGA-55-6969 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6981        TCGA-55-6985        TCGA-55-6987        TCGA-55-7281 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7283        TCGA-55-7570        TCGA-55-7573        TCGA-55-7574 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-4679        TCGA-67-6215 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-71-6725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-86-6562        TCGA-86-6851        TCGA-86-7701 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-86-7714        TCGA-91-6828 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6840        TCGA-91-6847        TCGA-91-6848 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-97-7546 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      2    1
  2P LOSS WILD-TYPE  152  130
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               2               152
  MALE                 1               130
D43V4, continuous
D43V5, multiclass
D43V6, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1               1                78
  T2               2               166
  T3               0                22
  T4               0                15
D43V7, multiclass
       clus
vv      2P LOSS MUTATED 2P LOSS WILD-TYPE
  N0                  2               167
  N1                  1                57
  N2+N3               0                52
D43V8, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  M0               2               198
  M1               0                16
  MX               1                61
D43V9, multiclass
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  I                 2               145
  II                1                60
  III               0                56
  IV                0                16
D43V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      0    3
  2P LOSS WILD-TYPE   13  269
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                0                13
  YES               3               269
D43V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      1    2
  2P LOSS WILD-TYPE   42  240
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                1                42
  YES               2               240

Clustering(44) Variable = 3p loss mutation analysis
D44V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED    33  16
  3P LOSS WILD-TYPE 137  65
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               49               202 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               16                65 
$`3P LOSS MUTATED`
TCGA-05-4397 TCGA-05-4415 TCGA-05-4432 TCGA-05-5715 TCGA-38-6178 TCGA-44-6144 
       24.03         2.96        25.02         2.04         5.19         0.30 
TCGA-44-6776 TCGA-44-7660 TCGA-44-7670 TCGA-49-4505 TCGA-49-4514 TCGA-50-5931 
       63.72         5.33        17.46        14.07        43.20         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5939 TCGA-50-6591 TCGA-50-6594 TCGA-53-7624 
       35.87        21.47        15.12         3.88        12.16        35.11 
TCGA-53-7626 TCGA-55-1594 TCGA-55-1596 TCGA-55-6968 TCGA-55-6975 TCGA-55-7283 
       31.89        38.73        45.17        42.48         3.88         1.12 
TCGA-55-7576 TCGA-55-7907 TCGA-55-7910 TCGA-55-7914 TCGA-64-1676 TCGA-64-1678 
        1.32         0.53         6.48         0.10        56.81        39.09 
TCGA-64-5774 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-6217 
       83.84        16.67         7.33         0.99         0.59        13.87 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-78-7146 TCGA-78-7148 TCGA-78-7167 
       29.95        20.28         0.46         5.65        20.58        88.11 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-91-6847 TCGA-91-7771 TCGA-95-7039 
       31.20         8.02        10.75        26.93         1.02         1.12 
TCGA-95-7043 
        0.07 

$`3P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
        1.02         4.96         2.96         0.99         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-7271 TCGA-44-2655 
       28.37        35.28        11.64        44.61        26.30        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48        16.37         6.84         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42         2.70        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       16.41         9.80         5.03         1.64        18.31        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5933 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 
        8.05         9.27        77.88         8.45         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       12.26        11.47        42.31        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 
       33.37         0.72         8.38        23.05        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
       48.49         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 
        0.13         3.12         1.28         1.02         0.79         0.62 
TCGA-55-7911 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 
        0.69        20.65        55.40        37.02        44.38         0.10 
TCGA-64-5778 TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       30.44        37.64         1.97         2.04         0.59         0.89 
TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
        2.01        52.57        23.38        15.35         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 
        1.25       163.10        27.16        19.27        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7220 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 
       26.53        53.33        28.96        10.55        32.68         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.89         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 
        1.15         0.36         4.18         0.92         9.76         4.18 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.07              0.03 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            88.11            223.96 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            13.87             13.15 
[1] "0.1 - 88.1 (13.9)"  "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D44V2, continuous
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     29   27
  3P LOSS WILD-TYPE  125  104
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              29               125
  MALE                27               104
D44V4, continuous
D44V5, multiclass
D44V6, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1              16                63
  T2              35               133
  T3               4                18
  T4               1                14
D44V7, multiclass
       clus
vv      3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0                 32               137
  N1                 15                43
  N2+N3               9                43
D44V8, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0              38               162
  M1               6                10
  MX              10                52
D44V9, multiclass
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  I                21               126
  II               21                40
  III               8                48
  IV                5                11
D44V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      3   53
  3P LOSS WILD-TYPE   10  219
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO                3                10
  YES              53               219
D44V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     10   46
  3P LOSS WILD-TYPE   33  196
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO               10                33
  YES              46               196

Clustering(45) Variable = 3q loss mutation analysis
D45V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    17   9
  3Q LOSS WILD-TYPE 153  72
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               26               225 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                9                72 
$`3Q LOSS MUTATED`
TCGA-05-4415 TCGA-05-4432 TCGA-05-5715 TCGA-44-6144 TCGA-44-6776 TCGA-50-5932 
        2.96        25.02         2.04         0.30        63.72        35.87 
TCGA-50-5935 TCGA-50-6591 TCGA-50-6594 TCGA-55-6975 TCGA-55-7283 TCGA-55-7576 
       21.47         3.88        12.16         3.88         1.12         1.32 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-67-3770 TCGA-67-3772 TCGA-73-4662 
       39.09        83.84        16.67         0.99         0.59        29.95 
TCGA-78-7148 TCGA-78-7167 TCGA-78-7535 TCGA-78-7539 TCGA-86-7713 TCGA-91-6847 
       20.58        88.11        31.20        10.75         0.23        26.93 
TCGA-91-7771 TCGA-95-7039 
        1.02         1.12 

$`3Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02        20.05        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 
       15.02         1.02         4.96         2.96         0.99         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 
        8.05         9.27         8.78        77.88         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
        9.37         4.44        12.26        11.47        42.31        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       11.05         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       31.89        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
        0.92        48.49         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.59         0.13         3.12         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.62         0.53         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 
       20.65        55.40        37.02        44.38         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       37.64         7.33         1.97         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 
        4.24         2.01        52.57        23.38        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
        0.46         1.32         4.01         1.25       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
        5.65        19.27        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7536 
        7.04       104.15       223.96         8.48        26.53         8.02 
TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 
       53.33        28.96        10.55        32.68         0.36         0.89 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-95-7567 
        4.18         0.92         9.76         4.18         0.07         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.23              0.03 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            88.11            223.96 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           11.455            13.610 
[1] "0.2 - 88.1 (11.5)"  "0.0 - 224.0 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     14   16
  3Q LOSS WILD-TYPE  140  115
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE              14               140
  MALE                16               115
D45V4, continuous
D45V5, multiclass
D45V6, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1               6                73
  T2              19               149
  T3               4                18
  T4               1                14
D45V7, multiclass
       clus
vv      3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0                 21               148
  N1                  5                53
  N2+N3               4                48
D45V8, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0              23               177
  M1               2                14
  MX               4                58
D45V9, multiclass
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  I                14               133
  II               10                51
  III               3                53
  IV                2                14
D45V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      1   29
  3Q LOSS WILD-TYPE   12  243
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                1                12
  YES              29               243
D45V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      5   25
  3Q LOSS WILD-TYPE   38  217
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                5                38
  YES              25               217

Clustering(46) Variable = 4p loss mutation analysis
D46V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED    20   5
  4P LOSS WILD-TYPE 150  76
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               25               226 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                5                76 
$`4P LOSS MUTATED`
TCGA-05-4397 TCGA-05-4398 TCGA-05-4405 TCGA-05-4420 TCGA-35-5375 TCGA-38-4625 
       24.03        47.05        20.05        29.95         8.68        47.61 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6146 TCGA-44-7660 TCGA-50-5051 TCGA-50-5936 
        3.48        16.37         9.93         5.33        14.96         8.45 
TCGA-53-7626 TCGA-55-1596 TCGA-55-6968 TCGA-55-7910 TCGA-64-5778 TCGA-64-5779 
       31.89        45.17        42.48         6.48        30.44        16.67 
TCGA-64-5815 TCGA-73-4659 TCGA-73-4670 TCGA-78-7536 TCGA-86-7713 TCGA-91-6831 
        7.33        23.38         0.46         8.02         0.23         1.28 
TCGA-95-7043 
        0.07 

$`4P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 
        8.02         2.96        14.93         8.98        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        5.95        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         0.30         3.35         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
        0.72         8.38        35.11        23.05        38.73        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 
        2.86         0.07        32.61         0.79        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.28         1.02         0.79         0.62         0.53         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
        0.10        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 
       44.38        83.84         0.10        37.64         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       52.57        29.95        20.28        15.35         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.25       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 
      223.96         8.48        88.11        26.53        31.20        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 
       10.75        28.96        10.55        32.68         0.36         0.89 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
        1.22        41.33         0.03         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.07              0.03 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            47.61            223.96 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            14.96             13.15 
[1] "0.1 - 47.6 (15.0)"  "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     10   16
  4P LOSS WILD-TYPE  144  115
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              10               144
  MALE                16               115
D46V4, continuous
D46V5, multiclass
D46V6, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1               4                75
  T2              20               148
  T3               1                21
  T4               1                14
D46V7, multiclass
       clus
vv      4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0                 14               155
  N1                  4                54
  N2+N3               8                44
D46V8, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0              19               181
  M1               2                14
  MX               4                58
D46V9, multiclass
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  I                11               136
  II                6                55
  III               8                48
  IV                1                15
D46V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      2   24
  4P LOSS WILD-TYPE   11  248
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO                2                11
  YES              24               248
D46V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      5   21
  4P LOSS WILD-TYPE   38  221
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO                5                38
  YES              21               221

Clustering(47) Variable = 4q loss mutation analysis
D47V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED    21   8
  4Q LOSS WILD-TYPE 149  73
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               29               222 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                8                73 
$`4Q LOSS MUTATED`
TCGA-05-4398 TCGA-05-4405 TCGA-05-4420 TCGA-35-5375 TCGA-44-5643 TCGA-44-5644 
       47.05        20.05        29.95         8.68         3.48        16.37 
TCGA-44-7660 TCGA-50-5051 TCGA-50-5936 TCGA-50-7109 TCGA-55-1592 TCGA-55-1594 
        5.33        14.96         8.45         8.38        23.05        38.73 
TCGA-55-1596 TCGA-55-6968 TCGA-55-7910 TCGA-64-5778 TCGA-64-5779 TCGA-69-7764 
       45.17        42.48         6.48        30.44        16.67        13.61 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
       23.38        29.95         0.46        88.11        31.20         8.02 
TCGA-86-7713 TCGA-91-6829 TCGA-91-6831 TCGA-91-6847 TCGA-95-7043 
        0.23        41.33         1.28        26.93         0.07 

$`4Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
       24.03         8.02         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41         9.80         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        77.88        21.47        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       12.16         6.21        33.37         0.72        35.11        31.89 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       48.62         2.86         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 
        1.32         1.28         1.02         0.79         0.62         0.53 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        0.69         0.10        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 
       37.02        44.38        83.84         0.10        37.64         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 
        0.69        13.87         5.06         6.12        22.68         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
        2.01        52.57        20.28        15.35         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.25       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
      223.96         8.48        26.53        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 TCGA-91-6830 
       10.55        32.68         0.36         0.89         1.22         0.03 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.15         0.36         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        4.18         1.12         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.07              0.03 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            88.11            223.96 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            16.67             12.46 
[1] "0.1 - 88.1 (16.7)"  "0.0 - 224.0 (12.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     10   21
  4Q LOSS WILD-TYPE  144  110
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              10               144
  MALE                21               110
D47V4, continuous
D47V5, multiclass
D47V6, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1               6                73
  T2              23               145
  T3               0                22
  T4               2                13
D47V7, multiclass
       clus
vv      4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0                 20               149
  N1                  1                57
  N2+N3              10                42
D47V8, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0              20               180
  M1               3                13
  MX               7                55
D47V9, multiclass
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  I                17               130
  II                2                59
  III              10                46
  IV                2                14
D47V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      3   28
  4Q LOSS WILD-TYPE   10  244
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO                3                10
  YES              28               244
D47V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      5   26
  4Q LOSS WILD-TYPE   38  216
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO                5                38
  YES              26               216

Clustering(48) Variable = 5p loss mutation analysis
D48V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED     4   2
  5P LOSS WILD-TYPE 166  79
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                6               245 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                2                79 
$`5P LOSS MUTATED`
TCGA-55-1596 TCGA-55-6968 TCGA-55-6975 TCGA-64-5779 TCGA-78-7161 TCGA-95-7043 
       45.17        42.48         3.88        16.67         7.04         0.07 

$`5P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
       18.31        18.87        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
        0.72         8.38        35.11        31.89        23.05        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       48.62         2.86         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92        48.49         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.28         1.02         0.79         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        0.69         0.10        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
       37.02        44.38        83.84         0.10        30.44        37.64 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
       13.61         4.24         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
        5.88        40.11        22.29       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       28.96        10.55        32.68         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.12         5.36        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.07              0.03 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            45.17            223.96 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           11.855            13.150 
[1] "0.1 - 45.2 (11.9)"  "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      2    4
  5P LOSS WILD-TYPE  152  127
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE               2               152
  MALE                 4               127
D48V4, continuous
D48V5, multiclass
D48V6, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1               2                77
  T2               3               165
  T3               1                21
  T4               0                15
D48V7, multiclass
       clus
vv      5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0                  3               166
  N1                  2                56
  N2+N3               1                51
D48V8, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0               4               196
  M1               1                15
  MX               1                61
D48V9, multiclass
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  I                 2               145
  II                3                58
  III               1                55
  IV                0                16
D48V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      0    6
  5P LOSS WILD-TYPE   13  266
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                0                13
  YES               6               266
D48V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      2    4
  5P LOSS WILD-TYPE   41  238
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                2                41
  YES               4               238

Clustering(49) Variable = 5q loss mutation analysis
D49V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    24   8
  5Q LOSS WILD-TYPE 146  73
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               32               219 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                8                73 
$`5Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4405 TCGA-05-4427 TCGA-05-5715 TCGA-38-4630 TCGA-44-5643 
        9.96        20.05        26.01         2.04        35.28         3.48 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6146 TCGA-44-7660 TCGA-44-7670 TCGA-49-4505 
       16.37         0.30         9.93         5.33        17.46        14.07 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 TCGA-55-6975 
       23.05        38.73        45.17         2.86        42.48         3.88 
TCGA-55-7281 TCGA-64-1676 TCGA-64-5778 TCGA-64-5779 TCGA-69-7765 TCGA-73-4668 
        0.59        56.81        30.44        16.67         4.24        15.35 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7161 TCGA-78-7167 TCGA-95-7039 TCGA-95-7043 
       35.93        21.86         7.04        88.11         1.12         0.07 
TCGA-95-7567 TCGA-97-7937 
        5.36         5.95 

$`5Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
        1.02         4.96         2.96         0.99         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 
       28.37        11.64        44.61         5.19        26.30        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        4.60         6.84         3.35         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 
        5.03         1.64        18.31        18.87        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1595 TCGA-55-6543 
        0.72         8.38        35.11        31.89        48.62         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
       32.61         0.79        40.70        15.25         0.92        48.49 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 
       24.99        40.54        71.05        38.47         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 
        3.12         1.32         1.28         1.02         0.79         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 
        0.53         6.48         0.69         0.10        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 
       55.40        37.02        44.38        83.84         0.10        37.64 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.61         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
        0.46         1.32         4.01         1.25       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
        5.65        19.27        20.58        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 
       38.50        32.09         5.88        40.11        22.29       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 
       10.75        28.96        10.55        32.68         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.18        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.07              0.03 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            88.11            223.96 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            14.71             13.15 
[1] "0.1 - 88.1 (14.7)"  "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     13   25
  5Q LOSS WILD-TYPE  141  106
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              13               141
  MALE                25               106
D49V4, continuous
[1] "Remove cluster labels:" "5Q LOSS MUTATED"       
clus
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                2                23 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7910        TCGA-55-7914 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1681        TCGA-71-6725        TCGA-73-4659 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4676        TCGA-75-5122 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7714 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
D49V5, multiclass
D49V6, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1              10                69
  T2              22               146
  T3               3                19
  T4               3                12
D49V7, multiclass
       clus
vv      5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0                 23               146
  N1                 12                46
  N2+N3               3                49
D49V8, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0              27               173
  M1               2                14
  MX               6                56
D49V9, multiclass
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  I                18               129
  II               12                49
  III               5                51
  IV                2                14
D49V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      1   37
  5Q LOSS WILD-TYPE   12  235
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO                1                12
  YES              37               235
D49V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      8   30
  5Q LOSS WILD-TYPE   35  212
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO                8                35
  YES              30               212

Clustering(50) Variable = 6p loss mutation analysis
D50V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    15   7
  6P LOSS WILD-TYPE 155  74
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               22               229 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                7                74 
$`6P LOSS MUTATED`
TCGA-05-4390 TCGA-35-4123 TCGA-38-4632 TCGA-49-4514 TCGA-50-5051 TCGA-50-5932 
       37.02         5.95        44.61        43.20        14.96        35.87 
TCGA-55-6968 TCGA-55-6972 TCGA-55-6983 TCGA-55-7576 TCGA-55-7903 TCGA-64-1676 
       42.48        48.49        60.03         1.32         0.62        56.81 
TCGA-69-7760 TCGA-73-4675 TCGA-78-7146 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
        5.06         1.32         5.65        39.48        24.99        19.50 
TCGA-78-7535 TCGA-78-7536 TCGA-95-7043 TCGA-97-7547 
       31.20         8.02         0.07        47.18 

$`6P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.59        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       29.75        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
        0.72         8.38        35.11        31.89        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70        15.25         0.92         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
        2.20        45.34        32.71        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 
       38.47         0.59         1.12         0.13         3.12         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.02         0.79         0.53         6.48         0.69         0.10 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        37.64         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
       13.87         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 
        4.01         1.25       163.10        27.16        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       35.93        21.86        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
       26.53        53.33        10.75        28.96        10.55        32.68 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 
        1.02         9.76         4.18         1.12         5.36        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.07              0.03 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            60.03            223.96 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           28.095            12.660 
[1] "0.1 - 60.0 (28.1)"  "0.0 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      7   17
  6P LOSS WILD-TYPE  147  114
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE               7               147
  MALE                17               114
D50V4, continuous
[1] "Remove cluster labels:" "6P LOSS MUTATED"       
clus
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                1                24 
       TCGA-35-4122        TCGA-35-5375        TCGA-55-7283        TCGA-55-7573 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-75-5122        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7714        TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
D50V5, multiclass
D50V6, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1               6                73
  T2              14               154
  T3               3                19
  T4               1                14
D50V7, multiclass
       clus
vv      6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0                 14               155
  N1                  4                54
  N2+N3               6                46
D50V8, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0              19               181
  M1               2                14
  MX               3                59
D50V9, multiclass
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  I                12               135
  II                4                57
  III               7                49
  IV                1                15
D50V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      1   23
  6P LOSS WILD-TYPE   12  249
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                1                12
  YES              23               249
D50V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      3   21
  6P LOSS WILD-TYPE   40  221
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                3                40
  YES              21               221

Clustering(51) Variable = 6q loss mutation analysis
D51V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    36  18
  6Q LOSS WILD-TYPE 134  63
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               54               197 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               18                63 
$`6Q LOSS MUTATED`
TCGA-05-4390 TCGA-05-5429 TCGA-35-4123 TCGA-38-4632 TCGA-44-2659 TCGA-44-2666 
       37.02         0.99         5.95        44.61        17.39         3.19 
TCGA-44-5644 TCGA-44-6779 TCGA-44-7659 TCGA-49-4488 TCGA-49-4494 TCGA-49-4505 
       16.37        16.41         9.80        28.57        35.54        14.07 
TCGA-49-4514 TCGA-50-5051 TCGA-50-5932 TCGA-50-5935 TCGA-50-5942 TCGA-50-6594 
       43.20        14.96        35.87        21.47         4.44        12.16 
TCGA-55-6543 TCGA-55-6968 TCGA-55-6972 TCGA-55-6983 TCGA-55-7283 TCGA-55-7576 
        0.07        42.48        48.49        60.03         1.12         1.32 
TCGA-55-7725 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1678 
        1.28         0.62         0.69         0.10        56.81        39.09 
TCGA-64-5774 TCGA-64-5779 TCGA-67-6216 TCGA-69-7760 TCGA-73-4666 TCGA-73-4675 
       83.84        16.67         0.69         5.06        20.28         1.32 
TCGA-78-7146 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 
        5.65        35.93        39.48        24.99        19.50        32.09 
TCGA-78-7158 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 
        5.88        31.20         8.02        53.33        28.96        32.68 
TCGA-86-7713 TCGA-91-6831 TCGA-95-7043 TCGA-97-7547 TCGA-97-7554 TCGA-97-7938 
        0.23         1.28         0.07        47.18         8.65         0.59 

$`6Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       24.00        15.02         1.02         4.96         2.96         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 
       49.02        28.37        35.28        11.64         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4501 
       17.59        13.74        76.21        28.11        12.66        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        29.75        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 
       77.88         8.45        15.12         9.37        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
        0.72         8.38        35.11        31.89        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       48.62        45.17         2.86        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       45.34        32.71        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7727 TCGA-55-7728 TCGA-55-7907 
        0.59         0.13         3.12         1.02         0.79         0.53 
TCGA-55-7910 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 
        6.48        20.65        55.40        37.02        44.38         0.10 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        37.64         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 
        2.04         0.59         0.89        13.87         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
       13.61         4.24         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
       15.35         0.46         4.01         1.25       163.10        27.16 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7155 TCGA-78-7159 TCGA-78-7160 
       19.27        20.58        21.86        38.50        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7539 TCGA-78-7542 TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 
       10.75        10.55         0.36         0.89         1.22        41.33 
TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 
        1.02         9.76         4.18         1.12         5.36        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7941 TCGA-99-7458 
       48.53        43.76         5.95         0.72         8.22 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.07              0.03 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            83.84            223.96 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            16.39             12.66 
[1] "0.1 - 83.8 (16.4)"  "0.0 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     31   33
  6Q LOSS WILD-TYPE  123   98
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE              31               123
  MALE                33                98
D51V4, continuous
D51V5, multiclass
D51V6, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1              19                60
  T2              33               135
  T3               8                14
  T4               4                11
D51V7, multiclass
       clus
vv      6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0                 38               131
  N1                 11                47
  N2+N3              15                37
D51V8, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0              45               155
  M1               5                11
  MX              11                51
D51V9, multiclass
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  I                30               117
  II               11                50
  III              16                40
  IV                4                12
D51V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      2   62
  6Q LOSS WILD-TYPE   11  210
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                2                11
  YES              62               210
D51V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      9   55
  6Q LOSS WILD-TYPE   34  187
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                9                34
  YES              55               187

Clustering(52) Variable = 7p loss mutation analysis
D52V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED     5   3
  7P LOSS WILD-TYPE 165  78
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                8               243 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                3                78 
$`7P LOSS MUTATED`
TCGA-38-4630 TCGA-44-5643 TCGA-50-5931 TCGA-55-1594 TCGA-67-3770 TCGA-67-3774 
       35.28         3.48         8.78        38.73         0.99         0.59 
TCGA-69-7763 TCGA-78-7167 
       22.68        88.11 

$`7P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
       47.61        85.32        37.71        49.02        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 
       10.22         8.32         6.44         6.21         4.60        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81         9.76        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       31.89        23.05        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        1.02         0.79         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
        0.10        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        37.64 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        7.33         1.97         0.59         2.04         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
       13.87         5.06         6.12        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 
        7.04       104.15       223.96         8.48        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         1.12         0.07         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.59              0.03 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            88.11            223.96 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            15.73             13.15 
[1] "0.6 - 88.1 (15.7)"  "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      5    5
  7P LOSS WILD-TYPE  149  126
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               5               149
  MALE                 5               126
D52V4, continuous
D52V5, multiclass
D52V6, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1               3                76
  T2               7               161
  T3               0                22
  T4               0                15
D52V7, multiclass
       clus
vv      7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0                  8               161
  N1                  0                58
  N2+N3               2                50
D52V8, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  M0               7               193
  M1               1                15
  MX               1                61
D52V9, multiclass
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  I                 7               140
  II                0                61
  III               2                54
  IV                1                15
D52V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1    9
  7P LOSS WILD-TYPE   12  263
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                1                12
  YES               9               263
D52V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1    9
  7P LOSS WILD-TYPE   42  233
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                1                42
  YES               9               233

Clustering(53) Variable = 7q loss mutation analysis
D53V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED     6   3
  7Q LOSS WILD-TYPE 164  78
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                9               242 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                3                78 
$`7Q LOSS MUTATED`
TCGA-38-4630 TCGA-44-5643 TCGA-49-6742 TCGA-50-5931 TCGA-50-6673 TCGA-55-1594 
       35.28         3.48        15.02         8.78         0.72        38.73 
TCGA-55-1595 TCGA-67-3770 TCGA-67-3774 
       48.62         0.99         0.59 

$`7Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
       47.61        85.32        37.71        49.02        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 
       10.22         8.32         6.44         6.21         4.60        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 
        6.21        33.37         8.38        35.11        31.89        23.05 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 
        3.12         1.32         1.28         1.02         0.79         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.53         6.48         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67        37.64         7.33         1.97         0.59 
TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        2.04         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.25       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 
       53.33        10.75        28.96        10.55        32.68         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.89         0.23         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 
        9.76         4.18         1.12         0.07         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.59              0.03 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            48.62            223.96 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             8.78             13.38 
[1] "0.6 - 48.6 (8.8)"   "0.0 - 224.0 (13.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      7    4
  7Q LOSS WILD-TYPE  147  127
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE               7               147
  MALE                 4               127
D53V4, continuous
D53V5, multiclass
D53V6, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1               4                75
  T2               7               161
  T3               0                22
  T4               0                15
D53V7, multiclass
       clus
vv      7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0                  8               161
  N1                  1                57
  N2+N3               2                50
D53V8, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0               8               192
  M1               0                16
  MX               2                60
D53V9, multiclass
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  I                 8               139
  II                1                60
  III               2                54
  IV                0                16
D53V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1   10
  7Q LOSS WILD-TYPE   12  262
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                1                12
  YES              10               262
D53V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      2    9
  7Q LOSS WILD-TYPE   41  233
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                2                41
  YES               9               233

Clustering(54) Variable = 8p loss mutation analysis
D54V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED    44  18
  8P LOSS WILD-TYPE 126  63
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               62               189 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               18                63 
$`8P LOSS MUTATED`
TCGA-05-4420 TCGA-05-4427 TCGA-05-4433 TCGA-05-5425 TCGA-35-4123 TCGA-38-4631 
       29.95        26.01        24.00         2.96         5.95        11.64 
TCGA-44-2662 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 
       15.78         6.44         6.21         3.48        16.37         0.30 
TCGA-44-6774 TCGA-44-7660 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 
        5.42         5.33        28.57        12.66        46.72        14.07 
TCGA-49-4510 TCGA-49-6761 TCGA-50-5049 TCGA-50-5931 TCGA-50-5932 TCGA-50-6593 
       29.46         0.03        48.82         8.78        35.87        11.05 
TCGA-50-6594 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 
       12.16        33.37         0.72        35.11        31.89        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6980 TCGA-55-7573 TCGA-55-7576 TCGA-55-7727 
       48.62         2.86         2.20         0.13         1.32         1.02 
TCGA-55-7903 TCGA-55-7914 TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 
        0.62         0.10        56.81        39.09        55.40        44.38 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-69-7760 
        0.10        30.44         7.33         0.99         0.59         5.06 
TCGA-73-4668 TCGA-78-7150 TCGA-78-7152 TCGA-78-7155 TCGA-78-7536 TCGA-78-7542 
       15.35        21.86        39.48        38.50         8.02        10.55 
TCGA-86-7713 TCGA-91-6836 TCGA-91-6847 TCGA-95-7039 TCGA-95-7043 TCGA-97-7554 
        0.23         0.36        26.93         1.12         0.07         8.65 
TCGA-97-7937 TCGA-97-7938 
        5.95         0.59 

$`8P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 
        8.98        30.02        26.01        25.02        25.02        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        1.02         4.96         0.99         2.04         0.46         7.36 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       35.28        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15        17.39         3.39        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
       10.22         8.32         4.60         6.84         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       16.41         9.80         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4494 
       17.46        17.59        13.74        76.21        28.11        35.54 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        71.47        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5933 TCGA-50-5935 
        9.76        49.28         8.05         9.27        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6595 TCGA-50-7109 TCGA-55-1592 
       42.31         3.88        25.51         6.21         8.38        23.05 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
       45.17         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 
       38.47         0.59         1.12         3.12         1.28         0.79 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 
        0.53         6.48         0.69        20.65        37.02        83.84 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       16.67        37.64         1.97         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 
       19.27        20.58        35.93        24.99        19.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        26.53        31.20        53.33        10.75 
TCGA-78-7540 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 
       28.96        32.68         0.36         0.89         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        0.03         1.28         1.15         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        9.76         4.18         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7941 TCGA-99-7458 
       43.76         0.72         8.22 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.03              0.03 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            56.81            223.96 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            9.665            14.930 
[1] "0.0 - 56.8 (9.7)"   "0.0 - 224.0 (14.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     39   34
  8P LOSS WILD-TYPE  115   97
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              39               115
  MALE                34                97
D54V4, continuous
D54V5, multiclass
D54V6, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1              26                53
  T2              42               126
  T3               4                18
  T4               1                14
D54V7, multiclass
       clus
vv      8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0                 46               123
  N1                 13                45
  N2+N3              14                38
D54V8, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0              54               146
  M1               3                13
  MX              15                47
D54V9, multiclass
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  I                40               107
  II               16                45
  III              14                42
  IV                3                13
D54V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      4   69
  8P LOSS WILD-TYPE    9  203
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO                4                 9
  YES              69               203
D54V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     10   63
  8P LOSS WILD-TYPE   33  179
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO               10                33
  YES              63               179

Clustering(55) Variable = 8q loss mutation analysis
D55V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED     7   1
  8Q LOSS WILD-TYPE 163  80
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                8               243 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                1                80 
$`8Q LOSS MUTATED`
TCGA-44-7660 TCGA-49-4501 TCGA-50-6597 TCGA-55-7573 TCGA-55-7727 TCGA-55-7903 
        5.33        46.72        33.37         0.13         1.02         0.62 
TCGA-64-1679 TCGA-95-7039 
       55.40         1.12 

$`8Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41         9.80         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       11.05        12.16         6.21         0.72         8.38        35.11 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       31.89        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
       38.47         0.59         1.12         3.12         1.32         1.28 
TCGA-55-7728 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.79         0.53         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       20.65        39.09        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        37.64         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       32.68         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-95-7567 
        0.92         1.02         9.76         4.18         0.07         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.13              0.03 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            55.40            223.96 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            3.225            13.610 
[1] "0.1 - 55.4 (3.2)"   "0.0 - 224.0 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "2.7"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      6    4
  8Q LOSS WILD-TYPE  148  127
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               6               148
  MALE                 4               127
D55V4, continuous
[1] "Remove cluster labels:" "8Q LOSS MUTATED"       
clus
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                1                24 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-75-5122        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7714        TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
D55V5, multiclass
D55V6, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1               4                75
  T2               5               163
  T3               1                21
  T4               0                15
D55V7, multiclass
       clus
vv      8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0                  7               162
  N1                  1                57
  N2+N3               2                50
D55V8, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0               5               195
  M1               0                16
  MX               5                57
D55V9, multiclass
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  I                 6               141
  II                2                59
  III               2                54
  IV                0                16
D55V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      0   10
  8Q LOSS WILD-TYPE   13  262
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                0                13
  YES              10               262
D55V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      2    8
  8Q LOSS WILD-TYPE   41  234
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                2                41
  YES               8               234

Clustering(56) Variable = 9p loss mutation analysis
D56V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED    50  30
  9P LOSS WILD-TYPE 120  51
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               80               171 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               30                51 
$`9P LOSS MUTATED`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4402 TCGA-05-4405 TCGA-05-4418 
        3.98        14.01         9.96         8.02        20.05         8.98 
TCGA-05-4433 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 TCGA-38-4628 TCGA-38-4630 
       24.00         4.96         2.96         2.04        49.02        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 
       11.64         5.19        18.87         3.48        16.37         0.30 
TCGA-44-6146 TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 TCGA-44-7669 TCGA-44-7670 
        9.93        16.41         5.33         1.64        18.87        17.46 
TCGA-44-7671 TCGA-49-4490 TCGA-49-4505 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 
       17.59        12.66        14.07        29.46        43.20        15.02 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 TCGA-50-5944 TCGA-50-5946 
        9.27         8.78        35.87         8.45        12.26        11.47 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6673 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         0.72        31.89        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6975 TCGA-55-6985 TCGA-55-7281 TCGA-55-7576 
       45.17         2.86         3.88        40.54         0.59         1.32 
TCGA-55-7907 TCGA-55-7914 TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5815 
        0.53         0.10        39.09        37.02        44.38         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 
        0.99         0.59         0.59         5.06         6.12        13.61 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       29.95        15.35         0.46         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7156 TCGA-78-7161 TCGA-78-7166 TCGA-78-7167 
       35.93        21.86        32.09         7.04         8.48        88.11 
TCGA-78-7540 TCGA-78-7633 TCGA-86-7711 TCGA-86-7713 TCGA-91-6829 TCGA-91-6847 
       28.96        32.68         0.89         0.23        41.33        26.93 
TCGA-91-6849 TCGA-95-7567 
        0.92         5.36 

$`9P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4415 
       38.07        19.92        37.02        24.03        47.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       14.93        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
       25.02        15.02         1.02         0.99         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        5.95         8.68        47.61        85.32        37.71        28.37 
TCGA-38-4632 TCGA-38-7271 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61        26.30        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6147 
        6.44         6.21         4.60         6.84         3.35         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7667 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
        9.80         5.03        18.31        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 
       28.57        35.54        46.72        32.84         8.81        29.75 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6590 
       77.88        21.47        15.12         9.37         4.44        42.31 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 
        3.88        11.05         6.21        33.37         8.38        35.11 
TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
       48.62         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92        48.49         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 
       45.34        32.71        60.03        24.99        71.05        38.47 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        1.12         0.13         3.12         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 
        0.62         6.48         0.69        56.81        20.65        55.40 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 
       83.84         0.10        30.44        16.67        37.64         1.97 
TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7763 TCGA-69-7765 
        2.04         0.89         0.69        13.87        22.68         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 
        2.01        52.57        23.38        20.28         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
        1.25       163.10        27.16        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 
       38.50         5.88        40.11        22.29       104.15       223.96 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 
       26.53        31.20         8.02        53.33        10.75        10.55 
TCGA-86-7701 TCGA-91-6828 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        0.36         1.22         0.03         1.28         1.15         0.36 
TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        4.18         1.02         9.76         4.18         1.12         0.07 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.10              0.03 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            88.11            223.96 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            12.21             13.87 
[1] "0.1 - 88.1 (12.2)"  "0.0 - 224.0 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     43   46
  9P LOSS WILD-TYPE  111   85
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              43               111
  MALE                46                85
D56V4, continuous
D56V5, multiclass
D56V6, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1              18                61
  T2              59               109
  T3               8                14
  T4               4                11
D56V7, multiclass
       clus
vv      9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0                 47               122
  N1                 27                31
  N2+N3              14                38
D56V8, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0              63               137
  M1               5                11
  MX              17                45
D56V9, multiclass
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  I                39               108
  II               28                33
  III              16                40
  IV                5                11
D56V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      5   84
  9P LOSS WILD-TYPE    8  188
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO                5                 8
  YES              84               188
D56V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     16   73
  9P LOSS WILD-TYPE   27  169
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO               16                27
  YES              73               169

Clustering(57) Variable = 9q loss mutation analysis
D57V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED    41  23
  9Q LOSS WILD-TYPE 129  58
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               64               187 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               23                58 
$`9Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4402 TCGA-05-4418 TCGA-05-4432 TCGA-05-4433 TCGA-05-5425 
        3.98         8.02         8.98        25.02        24.00         2.96 
TCGA-05-5715 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
        2.04        47.61        49.02        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-5644 TCGA-44-6144 TCGA-44-7660 TCGA-44-7669 TCGA-44-7670 
       18.87        16.37         0.30         5.33        18.87        17.46 
TCGA-44-7671 TCGA-49-4490 TCGA-49-4505 TCGA-49-4510 TCGA-49-4514 TCGA-50-5932 
       17.59        12.66        14.07        29.46        43.20        35.87 
TCGA-50-5936 TCGA-50-5944 TCGA-50-6594 TCGA-50-6673 TCGA-55-1592 TCGA-55-1594 
        8.45        12.26        12.16         0.72        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6975 TCGA-55-6985 TCGA-55-7281 TCGA-55-7907 
       45.17         2.86         3.88        40.54         0.59         0.53 
TCGA-55-7914 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5779 TCGA-67-3770 
        0.10        37.02        44.38        83.84        16.67         0.99 
TCGA-67-3772 TCGA-67-3774 TCGA-69-7760 TCGA-69-7761 TCGA-73-4662 TCGA-73-4668 
        0.59         0.59         5.06         6.12        29.95        15.35 
TCGA-73-4670 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
        0.46        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-78-7633 TCGA-86-7711 TCGA-86-7713 
       40.11         7.04        88.11        32.68         0.89         0.23 
TCGA-91-6829 TCGA-91-6847 TCGA-95-7039 TCGA-95-7567 
       41.33        26.93         1.12         5.36 

$`9Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
       47.05        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        26.01        25.02        15.02         1.02         4.96 
TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        0.99         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4632 TCGA-38-7271 TCGA-44-2656 TCGA-44-2657 
       37.71        28.37        44.61        26.30        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
        5.03         1.64        18.31        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 
       28.57        35.54        46.72        32.84         8.81        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 
        8.05         9.27         8.78        77.88        21.47        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
       11.05         6.21        33.37         8.38        35.11        31.89 
TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
       48.62         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92        48.49         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 
       45.34        32.71        60.03        24.99        71.05        38.47 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-64-1676 TCGA-64-1677 
        0.79         0.62         6.48         0.69        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       39.09        55.40         0.10        30.44        37.64         7.33 
TCGA-67-3771 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7763 
        1.97         2.04         0.89         0.69        13.87        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
       13.61         4.24         2.01        52.57        23.38        20.28 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7150 TCGA-78-7152 
        1.32         4.01         1.25       163.10        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 
       24.99        19.50        38.50        32.09         5.88        22.29 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      104.15       223.96         8.48        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-86-7701 TCGA-91-6828 
       53.33        10.75        28.96        10.55         0.36         1.22 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15         0.36         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 
        1.02         9.76         4.18         0.07        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.10              0.03 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            88.11            223.96 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            14.71             13.15 
[1] "0.1 - 88.1 (14.7)"  "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     40   34
  9Q LOSS WILD-TYPE  114   97
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              40               114
  MALE                34                97
D57V4, continuous
D57V5, multiclass
D57V6, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1              17                62
  T2              47               121
  T3               8                14
  T4               2                13
D57V7, multiclass
       clus
vv      9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0                 42               127
  N1                 20                38
  N2+N3              10                42
D57V8, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0              52               148
  M1               5                11
  MX              13                49
D57V9, multiclass
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  I                37               110
  II               20                41
  III              11                45
  IV                5                11
D57V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      3   71
  9Q LOSS WILD-TYPE   10  201
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                3                10
  YES              71               201
D57V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     12   62
  9Q LOSS WILD-TYPE   31  180
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO               12                31
  YES              62               180

Clustering(58) Variable = 10p loss mutation analysis
D58V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    12   8
  10P LOSS WILD-TYPE 158  73
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                20                231 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 8                 73 
$`10P LOSS MUTATED`
TCGA-05-5715 TCGA-38-4631 TCGA-38-6178 TCGA-44-3919 TCGA-44-6779 TCGA-44-7660 
        2.04        11.64         5.19         6.21        16.41         5.33 
TCGA-44-7669 TCGA-49-4488 TCGA-50-5931 TCGA-50-6591 TCGA-55-1596 TCGA-55-7281 
       18.87        28.57         8.78         3.88        45.17         0.59 
TCGA-64-1676 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-67-3770 TCGA-78-7147 
       56.81        83.84         0.10        16.67         0.99        19.27 
TCGA-78-7540 TCGA-95-7043 
       28.96         0.07 

$`10P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.44         4.60         3.48        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       63.72        32.45        36.49         9.80         5.03         1.64 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.31        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81         9.76        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 
       60.03        24.99        40.54        71.05        38.47         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 
        0.62         0.53         6.48         0.69         0.10        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-64-5781 
       39.09        55.40        37.02        44.38        30.44        37.64 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.24         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
       15.35         0.46         1.32         4.01         1.25       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16         5.65        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 
       26.53        31.20         8.02        53.33        10.75        10.55 
TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       32.68         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 
        0.92         1.02         9.76         4.18         1.12         5.36 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.07               0.03 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             83.84             223.96 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             10.21              13.61 
[1] "0.1 - 83.8 (10.2)"  "0.0 - 224.0 (13.6)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     16    7
  10P LOSS WILD-TYPE  138  124
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               16                138
  MALE                  7                124
D58V4, continuous
D58V5, multiclass
D58V6, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1                8                 71
  T2               13                155
  T3                1                 21
  T4                1                 14
D58V7, multiclass
       clus
vv      10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0                  16                153
  N1                   5                 53
  N2+N3                2                 50
D58V8, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0               13                187
  M1                1                 15
  MX                7                 55
D58V9, multiclass
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  I                 12                135
  II                 6                 55
  III                3                 53
  IV                 1                 15
D58V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      0   23
  10P LOSS WILD-TYPE   13  249
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 0                 13
  YES               23                249
D58V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      3   20
  10P LOSS WILD-TYPE   40  222
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 3                 40
  YES               20                222

Clustering(59) Variable = 10q loss mutation analysis
D59V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    13   8
  10Q LOSS WILD-TYPE 157  73
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                21                230 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                 8                 73 
$`10Q LOSS MUTATED`
TCGA-05-4397 TCGA-05-5715 TCGA-38-4631 TCGA-44-3919 TCGA-44-7660 TCGA-44-7669 
       24.03         2.04        11.64         6.21         5.33        18.87 
TCGA-49-4505 TCGA-50-6591 TCGA-55-5899 TCGA-55-7281 TCGA-64-1676 TCGA-64-5774 
       14.07         3.88         2.86         0.59        56.81        83.84 
TCGA-64-5779 TCGA-67-3770 TCGA-73-4668 TCGA-78-7147 TCGA-78-7535 TCGA-78-7540 
       16.67         0.99        15.35        19.27        31.20        28.96 
TCGA-78-7542 TCGA-91-6847 TCGA-95-7043 
       10.55        26.93         0.07 

$`10Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.44         4.60         3.48        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 
       63.72        32.45        36.49        16.41         9.80         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        1.64        18.31        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 
       28.11        28.57        12.66        35.54        46.72        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
        9.37         4.44        12.26        11.47        42.31        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       35.11        31.89        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
       38.47         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        1.02         0.79         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
        0.10        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 
        0.10        30.44        37.64         7.33         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 
        6.12        22.68        13.61         4.24         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 
        1.25       163.10        27.16         5.65        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        26.53         8.02        53.33        10.75 
TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       32.68         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15         0.36         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 
        1.02         9.76         4.18         1.12         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.07               0.03 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             83.84             223.96 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             14.07              13.15 
[1] "0.1 - 83.8 (14.1)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     14   11
  10Q LOSS WILD-TYPE  140  120
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               14                140
  MALE                 11                120
D59V4, continuous
[1] "Remove cluster labels:" "10Q LOSS MUTATED"      
clus
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                 1                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-71-6725 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-86-7701 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7714 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
D59V5, multiclass
D59V6, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1                8                 71
  T2               17                151
  T3                0                 22
  T4                0                 15
D59V7, multiclass
       clus
vv      10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0                  17                152
  N1                   7                 51
  N2+N3                1                 51
D59V8, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0               18                182
  M1                1                 15
  MX                5                 57
D59V9, multiclass
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  I                 16                131
  II                 6                 55
  III                1                 55
  IV                 1                 15
D59V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      0   25
  10Q LOSS WILD-TYPE   13  247
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 0                 13
  YES               25                247
D59V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      4   21
  10Q LOSS WILD-TYPE   39  221
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 4                 39
  YES               21                221

Clustering(60) Variable = 11p loss mutation analysis
D60V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    14   5
  11P LOSS WILD-TYPE 156  76
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                19                232 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 5                 76 
$`11P LOSS MUTATED`
TCGA-05-4427 TCGA-35-5375 TCGA-38-4625 TCGA-38-4632 TCGA-44-5643 TCGA-49-4510 
       26.01         8.68        47.61        44.61         3.48        29.46 
TCGA-50-6594 TCGA-53-7624 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-64-1676 
       12.16        35.11        48.62        45.17         2.86        56.81 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5815 TCGA-73-4670 TCGA-78-7145 TCGA-86-7711 
       44.38        83.84         7.33         0.46        27.16         0.89 
TCGA-91-6836 
        0.36 

$`11P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         5.95        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 
       49.02        28.37        35.28        11.64         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       14.07        32.84         8.81        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
        3.88        25.51        11.05         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-6543 TCGA-55-6642 
        8.38        31.89        23.05        38.73         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        0.79         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        55.40        37.02         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        37.64         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
      163.10         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7713 TCGA-91-6828 
       28.96        10.55        32.68         0.36         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 
       41.33         0.03         1.28         1.15        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        0.92         1.02         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.36               0.03 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             83.84             223.96 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             27.16              13.07 
[1] "0.4 - 83.8 (27.2)"  "0.0 - 224.0 (13.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     11   11
  11P LOSS WILD-TYPE  143  120
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               11                143
  MALE                 11                120
D60V4, continuous
D60V5, multiclass
D60V6, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1                6                 73
  T2               13                155
  T3                2                 20
  T4                1                 14
D60V7, multiclass
       clus
vv      11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0                  10                159
  N1                   9                 49
  N2+N3                3                 49
D60V8, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0               15                185
  M1                4                 12
  MX                3                 59
D60V9, multiclass
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  I                  8                139
  II                 7                 54
  III                3                 53
  IV                 4                 12
D60V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      1   21
  11P LOSS WILD-TYPE   12  251
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 1                 12
  YES               21                251
D60V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      3   19
  11P LOSS WILD-TYPE   40  223
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 3                 40
  YES               19                223

Clustering(61) Variable = 11q loss mutation analysis
D61V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    13   4
  11Q LOSS WILD-TYPE 157  77
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                17                234 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 4                 77 
$`11Q LOSS MUTATED`
TCGA-05-4427 TCGA-05-4433 TCGA-35-5375 TCGA-38-4625 TCGA-44-4112 TCGA-44-5643 
       26.01        24.00         8.68        47.61         4.60         3.48 
TCGA-49-4510 TCGA-50-6594 TCGA-55-1595 TCGA-64-1678 TCGA-64-1681 TCGA-64-5774 
       29.46        12.16        48.62        39.09        44.38        83.84 
TCGA-64-5778 TCGA-64-5815 TCGA-69-7764 TCGA-73-4662 TCGA-78-7145 
       30.44         7.33        13.61        29.95        27.16 

$`11Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36         5.95        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
       18.31        18.87        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       25.51        11.05         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
       35.11        31.89        23.05        38.73        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.28         1.02         0.79         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 
        0.69         0.10        56.81        20.65        55.40        37.02 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        16.67        37.64         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        6.12        22.68         4.24         2.01        52.57        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
      163.10         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       28.96        10.55        32.68         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.12         0.07         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         5.95         0.59         0.72         8.22 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              3.48               0.03 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             83.84             223.96 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             27.16              12.46 
[1] "3.5 - 83.8 (27.2)"  "0.0 - 224.0 (12.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
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        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "2"  
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     10    8
  11Q LOSS WILD-TYPE  144  123
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE               10                144
  MALE                  8                123
D61V4, continuous
D61V5, multiclass
D61V6, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1                5                 74
  T2               11                157
  T3                1                 21
  T4                1                 14
D61V7, multiclass
       clus
vv      11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0                  10                159
  N1                   5                 53
  N2+N3                3                 49
D61V8, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0               17                183
  M1                1                 15
  MX                0                 62
D61V9, multiclass
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  I                  9                138
  II                 5                 56
  III                3                 53
  IV                 1                 15
D61V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      2   16
  11Q LOSS WILD-TYPE   11  256
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 2                 11
  YES               16                256
D61V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      5   13
  11Q LOSS WILD-TYPE   38  229
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 5                 38
  YES               13                229

Clustering(62) Variable = 12p loss mutation analysis
D62V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED    15   8
  12P LOSS WILD-TYPE 155  73
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                23                228 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 8                 73 
$`12P LOSS MUTATED`
TCGA-05-4249 TCGA-44-2666 TCGA-44-7671 TCGA-50-5051 TCGA-50-5932 TCGA-50-5939 
       38.07         3.19        17.59        14.96        35.87        15.12 
TCGA-50-5942 TCGA-50-6594 TCGA-55-5899 TCGA-55-7727 TCGA-55-7914 TCGA-64-1676 
        4.44        12.16         2.86         1.02         0.10        56.81 
TCGA-64-5778 TCGA-67-3771 TCGA-67-6217 TCGA-73-4677 TCGA-78-7147 TCGA-78-7535 
       30.44         1.97        13.87         1.25        19.27        31.20 
TCGA-91-6847 TCGA-91-6849 TCGA-95-7043 TCGA-97-7547 TCGA-97-7938 
       26.93         0.92         0.07        47.18         0.59 

$`12P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        15.78        13.15         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.46        13.74        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27         8.78        77.88        21.47 
TCGA-50-5936 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        8.45         9.37        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       25.51        11.05         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       35.11        31.89        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        1.28         0.79         0.62         0.53         6.48         0.69 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
        0.10        16.67        37.64         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 
        2.04         0.59         0.89         0.69         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
      163.10        27.16         5.65        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       88.11        26.53         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       10.55        32.68         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 
       41.33         0.03         1.28         1.15         0.36         4.18 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 
        1.02         9.76         4.18         1.12         5.36        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7941 TCGA-99-7458 
       48.53        43.76         8.65         5.95         0.72         8.22 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.07               0.03 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             56.81             223.96 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             13.87              13.15 
[1] "0.1 - 56.8 (13.9)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-97-7941         TCGA-99-7458 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-97-7941         TCGA-99-7458 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     13   12
  12P LOSS WILD-TYPE  141  119
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE               13                141
  MALE                 12                119
D62V4, continuous
D62V5, multiclass
D62V6, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1                9                 70
  T2               15                153
  T3                1                 21
  T4                0                 15
D62V7, multiclass
       clus
vv      12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0                  16                153
  N1                   5                 53
  N2+N3                4                 48
D62V8, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0               17                183
  M1                0                 16
  MX                8                 54
D62V9, multiclass
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  I                 16                131
  II                 4                 57
  III                4                 52
  IV                 0                 16
D62V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      0   25
  12P LOSS WILD-TYPE   13  247
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 0                 13
  YES               25                247
D62V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      2   23
  12P LOSS WILD-TYPE   41  219
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 2                 41
  YES               23                219

Clustering(63) Variable = 12q loss mutation analysis
D63V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED     8   8
  12Q LOSS WILD-TYPE 162  73
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                16                235 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 8                 73 
$`12Q LOSS MUTATED`
TCGA-44-6779 TCGA-44-7671 TCGA-50-5932 TCGA-50-5939 TCGA-50-6594 TCGA-55-6984 
       16.41        17.59        35.87        15.12        12.16        24.99 
TCGA-55-7727 TCGA-64-5778 TCGA-67-6217 TCGA-73-4677 TCGA-78-7147 TCGA-78-7535 
        1.02        30.44        13.87         1.25        19.27        31.20 
TCGA-91-6847 TCGA-91-7771 TCGA-95-7043 TCGA-97-7547 
       26.93         1.02         0.07        47.18 

$`12Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       11.64        44.61         5.19        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       18.87        17.46        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 
       33.37         0.72         8.38        35.11        31.89        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       60.03        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7728 TCGA-55-7903 
        0.13         3.12         1.32         1.28         0.79         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.53         6.48         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        37.64         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 
        2.04         0.59         0.89         0.69         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
      163.10        27.16         5.65        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       88.11        26.53         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       10.55        32.68         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 
       41.33         0.03         1.28         1.15         0.36         4.18 
TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 
        0.92         9.76         4.18         1.12         5.36        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.07               0.03 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             47.18             223.96 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             17.00              12.66 
[1] "0.1 - 47.2 (17.0)"  "0.0 - 224.0 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      8   10
  12Q LOSS WILD-TYPE  146  121
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE                8                146
  MALE                 10                121
D63V4, continuous
[1] "Remove cluster labels:" "12Q LOSS MUTATED"      
clus
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 1                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-71-6725         TCGA-73-4659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-86-7701 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7714 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
D63V5, multiclass
D63V6, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1                3                 76
  T2               13                155
  T3                2                 20
  T4                0                 15
D63V7, multiclass
       clus
vv      12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0                  10                159
  N1                   6                 52
  N2+N3                2                 50
D63V8, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0               12                188
  M1                0                 16
  MX                6                 56
D63V9, multiclass
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  I                  9                138
  II                 7                 54
  III                2                 54
  IV                 0                 16
D63V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      0   18
  12Q LOSS WILD-TYPE   13  254
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 0                 13
  YES               18                254
D63V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      2   16
  12Q LOSS WILD-TYPE   41  226
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 2                 41
  YES               16                226

Clustering(64) Variable = 13q loss mutation analysis
D64V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED    36  21
  13Q LOSS WILD-TYPE 134  60
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                57                194 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                21                 60 
$`13Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4432 
        3.98        24.03        47.05         8.02        20.05        25.02 
TCGA-05-5423 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4632 TCGA-38-6178 
        4.96         5.95         8.68        47.61        44.61         5.19 
TCGA-44-2656 TCGA-44-2662 TCGA-44-5643 TCGA-44-5644 TCGA-44-6779 TCGA-44-7669 
       19.10        15.78         3.48        16.37        16.41        18.87 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-50-5051 TCGA-50-5931 TCGA-50-5935 
        8.81        29.46        29.75        14.96         8.78        21.47 
TCGA-50-5936 TCGA-50-5944 TCGA-50-6597 TCGA-50-7109 TCGA-55-1592 TCGA-55-1595 
        8.45        12.26        33.37         8.38        23.05        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6981 TCGA-55-7576 TCGA-55-7903 TCGA-64-1676 
       45.17         2.86        45.34         1.32         0.62        56.81 
TCGA-64-5779 TCGA-67-3770 TCGA-69-7760 TCGA-69-7764 TCGA-73-4659 TCGA-73-4662 
       16.67         0.99         5.06        13.61        23.38        29.95 
TCGA-73-4668 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7154 TCGA-78-7155 
       15.35        27.16         5.65        19.27        19.50        38.50 
TCGA-78-7539 TCGA-86-7711 TCGA-86-7713 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 
       10.75         0.89         0.23        41.33         1.28         0.36 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7554 
        5.36        31.66         8.65 

$`13Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4415 
       38.07        19.92        14.01        37.02         9.96         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
       14.93         8.98        29.95        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        2.04         0.46         7.36        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 
       28.37        35.28        11.64        26.30        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         4.60         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        36.49         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        1.64        18.31        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       32.84        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5939 
       49.28         8.05         9.27        35.87        77.88        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       11.05        12.16         6.21         0.72        35.11        31.89 
TCGA-55-1594 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
       38.73         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
        2.20        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 
       38.47         0.59         1.12         0.13         3.12         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.02         0.79         0.53         6.48         0.69         0.10 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 
        0.10        30.44        37.64         7.33         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 
        2.04         0.59         0.89         0.69        13.87         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4670 
       22.68         4.24         2.01        52.57        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7148 TCGA-78-7149 
        1.32         4.01         1.25       163.10        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       21.86        39.48        24.99        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 
       26.53        31.20         8.02        53.33        28.96        10.55 
TCGA-78-7633 TCGA-86-7701 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-91-6847 
       32.68         0.36         1.22         0.03         1.15        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 
        0.07        47.18        48.53        43.76         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.23               0.03 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             56.81             223.96 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             15.78              12.41 
[1] "0.2 - 56.8 (15.8)"  "0.0 - 224.0 (12.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     30   34
  13Q LOSS WILD-TYPE  124   97
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               30                124
  MALE                 34                 97
D64V4, continuous
D64V5, multiclass
D64V6, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1               16                 63
  T2               41                127
  T3                4                 18
  T4                3                 12
D64V7, multiclass
       clus
vv      13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0                  31                138
  N1                  17                 41
  N2+N3               15                 37
D64V8, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0               46                154
  M1                5                 11
  MX               11                 51
D64V9, multiclass
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  I                 29                118
  II                14                 47
  III               16                 40
  IV                 5                 11
D64V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      3   61
  13Q LOSS WILD-TYPE   10  211
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                 3                 10
  YES               61                211
D64V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     12   52
  13Q LOSS WILD-TYPE   31  190
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                12                 31
  YES               52                190

Clustering(65) Variable = 14q loss mutation analysis
D65V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    16   6
  14Q LOSS WILD-TYPE 154  75
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                22                229 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 6                 75 
$`14Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4405 TCGA-05-4427 TCGA-38-4632 TCGA-44-5643 TCGA-44-6146 
        9.96        20.05        26.01        44.61         3.48         9.93 
TCGA-44-7669 TCGA-44-7671 TCGA-49-4514 TCGA-50-5931 TCGA-55-1595 TCGA-55-7281 
       18.87        17.59        43.20         8.78        48.62         0.59 
TCGA-64-1680 TCGA-64-5778 TCGA-64-5779 TCGA-67-3774 TCGA-73-4662 TCGA-78-7146 
       37.02        30.44        16.67         0.59        29.95         5.65 
TCGA-78-7535 TCGA-86-7711 TCGA-97-7546 TCGA-97-7547 
       31.20         0.89        31.66        47.18 

$`14Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 
       49.02        28.37        35.28        11.64         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60        16.37         6.84         0.30         3.35 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       18.31        17.46        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 
       60.03        24.99        40.54        71.05        38.47         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.62         0.53         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       20.65        39.09        55.40        44.38        83.84         0.10 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       37.64         7.33         0.99         1.97         0.59         2.04 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
       13.61         4.24         2.01        52.57        23.38        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
       15.35         0.46         1.32         4.01         1.25       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       26.53         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-86-7701 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
       32.68         0.36         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         1.12         0.07         5.36 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.59               0.03 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             48.62             223.96 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             19.46              12.66 
[1] "0.6 - 48.6 (19.5)"  "0.0 - 224.0 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     13   14
  14Q LOSS WILD-TYPE  141  117
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE               13                141
  MALE                 14                117
D65V4, continuous
D65V5, multiclass
D65V6, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1                6                 73
  T2               19                149
  T3                1                 21
  T4                1                 14
D65V7, multiclass
       clus
vv      14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0                  17                152
  N1                   5                 53
  N2+N3                5                 47
D65V8, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0               21                179
  M1                2                 14
  MX                3                 59
D65V9, multiclass
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  I                 15                132
  II                 4                 57
  III                5                 51
  IV                 2                 14
D65V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      3   24
  14Q LOSS WILD-TYPE   10  248
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 3                 10
  YES               24                248
D65V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      7   20
  14Q LOSS WILD-TYPE   36  222
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 7                 36
  YES               20                222

Clustering(66) Variable = 15q loss mutation analysis
D66V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    34  19
  15Q LOSS WILD-TYPE 136  62
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                53                198 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                19                 62 
$`15Q LOSS MUTATED`
TCGA-05-4249 TCGA-05-4398 TCGA-05-4402 TCGA-05-4424 TCGA-05-5425 TCGA-35-4123 
       38.07        47.05         8.02        30.02         2.96         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
        8.68        47.61        49.02        35.28        11.64         5.19 
TCGA-44-2659 TCGA-44-3919 TCGA-44-7660 TCGA-44-7667 TCGA-44-7670 TCGA-49-4488 
       17.39         6.21         5.33        18.31        17.46        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4514 TCGA-50-5051 TCGA-50-5935 TCGA-50-6591 
       12.66        46.72        43.20        14.96        21.47         3.88 
TCGA-50-6594 TCGA-50-7109 TCGA-53-7626 TCGA-55-5899 TCGA-55-7281 TCGA-55-7576 
       12.16         8.38        31.89         2.86         0.59         1.32 
TCGA-55-7727 TCGA-55-7903 TCGA-64-1676 TCGA-64-1681 TCGA-64-5774 TCGA-64-5779 
        1.02         0.62        56.81        44.38        83.84        16.67 
TCGA-67-3770 TCGA-73-4662 TCGA-73-4668 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        0.99        29.95        15.35        27.16         5.65        19.27 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7542 TCGA-91-6829 TCGA-91-6831 
       88.11        31.20         8.02        10.55        41.33         1.28 
TCGA-91-6836 TCGA-91-6847 TCGA-95-7039 TCGA-95-7567 TCGA-97-7554 
        0.36        26.93         1.12         5.36         8.65 

$`15Q LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
       20.05         2.96        14.93         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-38-4626 
        4.96         0.99         2.04         0.46         7.36        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4632 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
       37.71        28.37        44.61        26.30        18.87        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
       10.22         8.32         6.44         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 
        9.80         5.03         1.64        18.87        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       76.21        28.11        35.54        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       42.31        25.51        11.05         6.21        33.37         0.72 
TCGA-53-7624 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       35.11        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 TCGA-55-7907 
        1.12         0.13         3.12         1.28         0.79         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        6.48         0.69         0.10        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 
       37.02         0.10        30.44        37.64         7.33         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       52.57        23.38        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        1.25       163.10        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 
       22.29         7.04       104.15       223.96         8.48        26.53 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 
       53.33        10.75        28.96        32.68         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 
        0.23         1.22         0.03         1.15         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 
        1.02         9.76         4.18         0.07        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       48.53        43.76         5.95         0.59         0.72         8.22 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.36               0.03 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             88.11             223.96 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             14.96              13.15 
[1] "0.4 - 88.1 (15.0)"  "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
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        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     37   26
  15Q LOSS WILD-TYPE  117  105
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE               37                117
  MALE                 26                105
D66V4, continuous
D66V5, multiclass
D66V6, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1               20                 59
  T2               35                133
  T3                6                 16
  T4                2                 13
D66V7, multiclass
       clus
vv      15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0                  37                132
  N1                  13                 45
  N2+N3               12                 40
D66V8, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0               43                157
  M1                4                 12
  MX               13                 49
D66V9, multiclass
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  I                 31                116
  II                15                 46
  III               12                 44
  IV                 4                 12
D66V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      3   60
  15Q LOSS WILD-TYPE   10  212
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 3                 10
  YES               60                212
D66V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     11   52
  15Q LOSS WILD-TYPE   32  190
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                11                 32
  YES               52                190

Clustering(67) Variable = 16p loss mutation analysis
D67V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED    12   8
  16P LOSS WILD-TYPE 158  73
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                20                231 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 8                 73 
$`16P LOSS MUTATED`
TCGA-05-4396 TCGA-05-4402 TCGA-05-4420 TCGA-05-4427 TCGA-44-5643 TCGA-44-7660 
        9.96         8.02        29.95        26.01         3.48         5.33 
TCGA-49-4488 TCGA-49-6743 TCGA-50-6591 TCGA-53-7624 TCGA-55-5899 TCGA-55-6968 
       28.57        12.13         3.88        35.11         2.86        42.48 
TCGA-67-3770 TCGA-73-4662 TCGA-78-7143 TCGA-78-7167 TCGA-78-7536 TCGA-91-6847 
        0.99        29.95       163.10        88.11         8.02        26.93 
TCGA-95-7567 TCGA-97-7937 
        5.36         5.95 

$`16P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
       47.05        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49        16.41         9.80         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
       18.31        18.87        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47        42.31        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       12.16         6.21        33.37         0.72         8.38        31.89 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 
        0.62         0.53         6.48         0.69         0.10        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 
        0.10        30.44        16.67        37.64         7.33         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        4.01         1.25        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 
      223.96         8.48        26.53        31.20        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       28.96        10.55        32.68         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        0.07        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        0.59         0.72         8.22 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.99               0.03 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            163.10             223.96 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            11.045             13.610 
[1] "1.0 - 163.1 (11.0)" "0.0 - 224.0 (13.6)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     11   11
  16P LOSS WILD-TYPE  143  120
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE               11                143
  MALE                 11                120
D67V4, continuous
[1] "Remove cluster labels:" "16P LOSS MUTATED"      
clus
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 1                 24 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-71-6725 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4666         TCGA-73-4668 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-86-7701 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7714 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
D67V5, multiclass
D67V6, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1                6                 73
  T2               14                154
  T3                1                 21
  T4                1                 14
D67V7, multiclass
       clus
vv      16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0                  14                155
  N1                   4                 54
  N2+N3                3                 49
D67V8, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0               11                189
  M1                5                 11
  MX                6                 56
D67V9, multiclass
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  I                 12                135
  II                 2                 59
  III                4                 52
  IV                 4                 12
D67V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      3   19
  16P LOSS WILD-TYPE   10  253
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 3                 10
  YES               19                253
D67V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      4   18
  16P LOSS WILD-TYPE   39  224
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 4                 39
  YES               18                224

Clustering(68) Variable = 16q loss mutation analysis
D68V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    28   8
  16Q LOSS WILD-TYPE 142  73
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                36                215 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 8                 73 
$`16Q LOSS MUTATED`
TCGA-05-4402 TCGA-05-4405 TCGA-05-4420 TCGA-05-4427 TCGA-05-4432 TCGA-35-4123 
        8.02        20.05        29.95        26.01        25.02         5.95 
TCGA-38-4625 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-7660 
       47.61         6.21         4.60         3.48        16.37         5.33 
TCGA-49-4488 TCGA-49-6743 TCGA-50-6591 TCGA-53-7624 TCGA-55-1595 TCGA-55-5899 
       28.57        12.13         3.88        35.11        48.62         2.86 
TCGA-55-6968 TCGA-55-7281 TCGA-64-5774 TCGA-64-5778 TCGA-67-3770 TCGA-73-4662 
       42.48         0.59        83.84        30.44         0.99        29.95 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7152 TCGA-78-7167 TCGA-78-7536 TCGA-86-7711 
      163.10         5.65        39.48        88.11         8.02         0.89 
TCGA-86-7713 TCGA-91-6847 TCGA-91-7771 TCGA-95-7567 TCGA-97-7546 TCGA-97-7937 
        0.23        26.93         1.02         5.36        31.66         5.95 

$`16Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
       24.03        47.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
        2.96         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
       10.22         8.32         6.44         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49        16.41         9.80         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
       18.31        18.87        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47        42.31        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       12.16         6.21        33.37         0.72         8.38        31.89 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       23.05        38.73        45.17         0.07        32.61         0.79 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       40.54        71.05        38.47         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 
        1.32         1.28         1.02         0.79         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        6.48         0.69         0.10        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       55.40        37.02        44.38         0.10        16.67        37.64 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 
        4.24         2.01        52.57        23.38        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7145 TCGA-78-7147 
        0.46         1.32         4.01         1.25        27.16        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       20.58        35.93        21.86        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 
      223.96         8.48        26.53        31.20        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-91-6828 TCGA-91-6829 
       28.96        10.55        32.68         0.36         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15         0.36         4.18         0.92 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-97-7547 TCGA-97-7552 
        9.76         4.18         1.12         0.07        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         8.65         0.59         0.72         8.22 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.23               0.03 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            163.10             223.96 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             14.25              13.15 
[1] "0.2 - 163.1 (14.2)" "0.0 - 224.0 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "2"  
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     20   20
  16Q LOSS WILD-TYPE  134  111
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               20                134
  MALE                 20                111
D68V4, continuous
D68V5, multiclass
D68V6, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1               12                 67
  T2               27                141
  T3                1                 21
  T4                0                 15
D68V7, multiclass
       clus
vv      16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0                  27                142
  N1                   7                 51
  N2+N3                5                 47
D68V8, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0               26                174
  M1                5                 11
  MX                7                 55
D68V9, multiclass
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  I                 24                123
  II                 6                 55
  III                5                 51
  IV                 4                 12
D68V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      3   37
  16Q LOSS WILD-TYPE   10  235
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 3                 10
  YES               37                235
D68V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      5   35
  16Q LOSS WILD-TYPE   38  207
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 5                 38
  YES               35                207

Clustering(69) Variable = 17p loss mutation analysis
D69V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED    43  20
  17P LOSS WILD-TYPE 127  61
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                63                188 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                20                 61 
$`17P LOSS MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4420 TCGA-05-4426 
       38.07         9.96        24.03         8.02        29.95        26.01 
TCGA-05-4433 TCGA-05-5429 TCGA-35-4123 TCGA-38-4625 TCGA-44-2659 TCGA-44-2665 
       24.00         0.99         5.95        47.61        17.39        13.15 
TCGA-44-3919 TCGA-44-5643 TCGA-44-6779 TCGA-44-7660 TCGA-49-4488 TCGA-49-4505 
        6.21         3.48        16.41         5.33        28.57        14.07 
TCGA-49-4512 TCGA-50-5931 TCGA-50-5936 TCGA-50-5944 TCGA-50-6591 TCGA-50-6673 
       29.75         8.78         8.45        12.26         3.88         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
        8.38        35.11        31.89        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6968 TCGA-55-6972 TCGA-55-6982 TCGA-55-6984 TCGA-55-6985 
       45.17        42.48        48.49        32.71        24.99        40.54 
TCGA-55-7573 TCGA-55-7576 TCGA-55-7727 TCGA-55-7903 TCGA-55-7910 TCGA-55-7914 
        0.13         1.32         1.02         0.62         6.48         0.10 
TCGA-64-1676 TCGA-64-5774 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       56.81        83.84         7.33         0.99         0.59         2.04 
TCGA-67-6217 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 TCGA-78-7146 TCGA-78-7150 
       13.87         6.12        13.61         4.24         5.65        21.86 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7540 TCGA-86-7711 TCGA-91-6831 TCGA-91-6847 
       31.20         8.02        28.96         0.89         1.28        26.93 
TCGA-95-7039 TCGA-97-7554 TCGA-97-7938 
        1.12         8.65         0.59 

$`17P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4405 
        3.98        19.92        14.01        37.02        47.05        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 
        2.96        14.93         8.98        30.02        26.01        25.02 
TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       25.02        15.02         1.02         4.96         2.96         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36         8.68        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 
       18.87        19.10        13.15         3.39        15.78         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5644 
        8.09        10.22         8.32         6.44         4.60        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
        5.42         2.70        63.72        32.45        36.49         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       13.74        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        77.88        21.47        15.12         9.37         4.44 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       33.37         2.86         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6983 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       45.34        60.03        71.05        38.47         0.59         1.12 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 TCGA-55-7907 TCGA-55-7911 TCGA-64-1677 
        3.12         1.28         0.79         0.53         0.69        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 
       39.09        55.40        37.02        44.38         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       16.67        37.64         1.97         0.59         0.89         0.69 
TCGA-69-7760 TCGA-69-7763 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        5.06        22.68         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 
      163.10        27.16        19.27        20.58        35.93        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 
       26.53        53.33        10.75        10.55        32.68         0.36 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 
        0.23         1.22        41.33         0.03         1.15         0.36 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 
        4.18         0.92         1.02         9.76         4.18         0.07 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 
        5.36        31.66        47.18        48.53        43.76         5.95 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.10               0.03 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             83.84             223.96 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            12.260             13.875 
[1] "0.1 - 83.8 (12.3)"  "0.0 - 224.0 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-97-7941         TCGA-99-7458 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-97-7941         TCGA-99-7458 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-97-7941         TCGA-99-7458 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     39   36
  17P LOSS WILD-TYPE  115   95
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               39                115
  MALE                 36                 95
D69V4, continuous
D69V5, multiclass
D69V6, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1               22                 57
  T2               48                120
  T3                3                 19
  T4                2                 13
D69V7, multiclass
       clus
vv      17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0                  46                123
  N1                  18                 40
  N2+N3               10                 42
D69V8, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0               51                149
  M1                5                 11
  MX               19                 43
D69V9, multiclass
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  I                 38                109
  II                21                 40
  III               11                 45
  IV                 5                 11
D69V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      2   73
  17P LOSS WILD-TYPE   11  199
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                 2                 11
  YES               73                199
D69V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     10   65
  17P LOSS WILD-TYPE   33  177
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                10                 33
  YES               65                177

Clustering(70) Variable = 17q loss mutation analysis
D70V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED     4   6
  17Q LOSS WILD-TYPE 166  75
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                10                241 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 6                 75 
$`17Q LOSS MUTATED`
TCGA-05-4396 TCGA-44-2665 TCGA-49-4488 TCGA-49-4512 TCGA-50-5931 TCGA-53-7624 
        9.96        13.15        28.57        29.75         8.78        35.11 
TCGA-55-6972 TCGA-69-7764 TCGA-78-7146 TCGA-78-7535 
       48.49        13.61         5.65        31.20 

$`17Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        15.78         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       17.46        17.59        13.74        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
       33.37         0.72         8.38        31.89        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 
       42.48        40.70        15.25         0.92         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 
        3.12         1.32         1.28         1.02         0.79         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.53         6.48         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        37.64         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 
        5.06         6.12        22.68         4.24         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 
        4.01         1.25       163.10        27.16        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        88.11        26.53         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 
       10.75        28.96        10.55        32.68         0.36         0.89 
TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.23         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        4.18         1.12         0.07         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              5.65               0.03 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             48.49             223.96 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             21.09              12.99 
[1] "5.7 - 48.5 (21.1)"  "0.0 - 224.0 (13.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      7    5
  17Q LOSS WILD-TYPE  147  126
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                7                147
  MALE                  5                126
D70V4, continuous
D70V5, multiclass
D70V6, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1                2                 77
  T2                9                159
  T3                0                 22
  T4                1                 14
D70V7, multiclass
       clus
vv      17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0                   6                163
  N1                   3                 55
  N2+N3                3                 49
D70V8, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0                9                191
  M1                1                 15
  MX                2                 60
D70V9, multiclass
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  I                  5                142
  II                 2                 59
  III                4                 52
  IV                 1                 15
D70V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      0   12
  17Q LOSS WILD-TYPE   13  260
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 0                 13
  YES               12                260
D70V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      4    8
  17Q LOSS WILD-TYPE   39  234
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 4                 39
  YES                8                234

Clustering(71) Variable = 18p loss mutation analysis
D71V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    25  12
  18P LOSS WILD-TYPE 145  69
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                37                214 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                12                 69 
$`18P LOSS MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4426 TCGA-05-5425 TCGA-05-5715 TCGA-35-5375 
        3.98        37.02        26.01         2.96         2.04         8.68 
TCGA-38-4632 TCGA-44-6779 TCGA-44-7669 TCGA-44-7670 TCGA-49-4488 TCGA-49-4505 
       44.61        16.41        18.87        17.46        28.57        14.07 
TCGA-49-4512 TCGA-50-5936 TCGA-50-5946 TCGA-50-6597 TCGA-53-7624 TCGA-55-1594 
       29.75         8.45        11.47        33.37        35.11        38.73 
TCGA-55-1596 TCGA-55-6972 TCGA-55-6975 TCGA-55-7281 TCGA-55-7283 TCGA-55-7728 
       45.17        48.49         3.88         0.59         1.12         0.79 
TCGA-55-7910 TCGA-67-6216 TCGA-69-7765 TCGA-73-4666 TCGA-73-4670 TCGA-78-7146 
        6.48         0.69         4.24        20.28         0.46         5.65 
TCGA-78-7167 TCGA-78-7535 TCGA-91-6836 TCGA-95-7039 TCGA-95-7567 TCGA-97-7937 
       88.11        31.20         0.36         1.12         5.36         5.95 
TCGA-97-7941 
        0.72 

$`18P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        1.02         4.96         0.99         0.46         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7671 
        9.80         5.33         5.03         1.64        18.31        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       13.74        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88        21.47        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-55-1592 
       12.16         6.21         0.72         8.38        31.89        23.05 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       48.62         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       40.70        15.25         0.92         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
       38.47         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.62         0.53         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        37.64         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 
        0.59         2.04         0.59         0.89        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        6.12        22.68        13.61         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
       29.95        15.35         1.32         4.01         1.25       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 
       22.29         7.04       104.15       223.96         8.48        26.53 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.36         0.89         0.23         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.28         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        9.76         4.18         0.07        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-99-7458 
       43.76         8.65         0.59         8.22 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.36               0.03 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             88.11             223.96 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             8.680             13.675 
[1] "0.4 - 88.1 (8.7)"   "0.0 - 224.0 (13.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     26   21
  18P LOSS WILD-TYPE  128  110
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               26                128
  MALE                 21                110
D71V4, continuous
D71V5, multiclass
D71V6, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1                8                 71
  T2               33                135
  T3                4                 18
  T4                2                 13
D71V7, multiclass
       clus
vv      18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0                  25                144
  N1                  12                 46
  N2+N3               10                 42
D71V8, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0               27                173
  M1                6                 10
  MX               12                 50
D71V9, multiclass
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  I                 16                131
  II                12                 49
  III               10                 46
  IV                 7                  9
D71V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      1   46
  18P LOSS WILD-TYPE   12  226
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 1                 12
  YES               46                226
D71V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      8   39
  18P LOSS WILD-TYPE   35  203
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 8                 35
  YES               39                203

Clustering(72) Variable = 18q loss mutation analysis
D72V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED    39  20
  18Q LOSS WILD-TYPE 131  61
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                59                192 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                20                 61 
$`18Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4402 TCGA-05-4405 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 
        3.98         8.02        20.05        26.01        26.01        24.00 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-5375 TCGA-38-4631 
        4.96         2.96         0.99         2.04         8.68        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-6146 TCGA-44-6779 TCGA-44-7669 TCGA-44-7670 
       44.61         5.19         9.93        16.41        18.87        17.46 
TCGA-49-4488 TCGA-49-4505 TCGA-49-4512 TCGA-50-5936 TCGA-50-5946 TCGA-50-6594 
       28.57        14.07        29.75         8.45        11.47        12.16 
TCGA-50-6597 TCGA-53-7624 TCGA-55-1594 TCGA-55-1596 TCGA-55-6972 TCGA-55-6975 
       33.37        35.11        38.73        45.17        48.49         3.88 
TCGA-55-6980 TCGA-55-7281 TCGA-55-7283 TCGA-55-7576 TCGA-55-7725 TCGA-55-7728 
        2.20         0.59         1.12         1.32         1.28         0.79 
TCGA-55-7910 TCGA-64-5775 TCGA-64-5778 TCGA-67-3770 TCGA-67-6216 TCGA-69-7760 
        6.48         0.10        30.44         0.99         0.69         5.06 
TCGA-69-7765 TCGA-73-4666 TCGA-73-4670 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        4.24        20.28         0.46        27.16         5.65        19.27 
TCGA-78-7150 TCGA-78-7155 TCGA-78-7161 TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 
       21.86        38.50         7.04        31.20         8.02        10.75 
TCGA-86-7711 TCGA-91-6836 TCGA-95-7567 TCGA-97-7937 TCGA-97-7941 
        0.89         0.36         5.36         5.95         0.72 

$`18Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       47.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-35-3615 TCGA-35-4122 
       25.02        25.02        15.02         1.02         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       35.28        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         0.30         3.35         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 
        2.70        63.72        32.45        36.49         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        5.03         1.64        18.31        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.11        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47        15.12         9.37         4.44        12.26 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6673 
       42.31         3.88        25.51        11.05         6.21         0.72 
TCGA-50-7109 TCGA-53-7626 TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
        8.38        31.89        23.05        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        5.46         7.76        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7573 TCGA-55-7574 TCGA-55-7727 
       40.54        71.05        38.47         0.13         3.12         1.02 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.62         0.53         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5779 
       39.09        55.40        37.02        44.38        83.84        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       37.64         7.33         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-71-6725 
        0.89        13.87         6.12        22.68        13.61         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       52.57        23.38        29.95        15.35         1.32         4.01 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 
        1.25       163.10        20.58        35.93        39.48        24.99 
TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 
       19.50        32.09         5.88        40.11        22.29       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 TCGA-78-7540 
      223.96         8.48        88.11        26.53        53.33        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       10.55        32.68         0.36         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-97-7546 
        1.02         9.76         4.18         1.12         0.07        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-99-7458 
       47.18        48.53        43.76         8.65         0.59         8.22 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.10               0.03 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             48.49             223.96 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              8.45              14.99 
[1] "0.1 - 48.5 (8.4)"   "0.0 - 224.0 (15.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
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        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
[1] "hr=" "2"  
D72V2, continuous
D72V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     39   34
  18Q LOSS WILD-TYPE  115   97
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               39                115
  MALE                 34                 97
D72V4, continuous
D72V5, multiclass
D72V6, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1               13                 66
  T2               48                120
  T3                8                 14
  T4                4                 11
D72V7, multiclass
       clus
vv      18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0                  39                130
  N1                  19                 39
  N2+N3               14                 38
D72V8, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0               49                151
  M1                7                  9
  MX               14                 48
D72V9, multiclass
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  I                 26                121
  II                22                 39
  III               15                 41
  IV                 8                  8
D72V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      2   71
  18Q LOSS WILD-TYPE   11  201
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                 2                 11
  YES               71                201
D72V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     13   60
  18Q LOSS WILD-TYPE   30  182
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                13                 30
  YES               60                182

Clustering(73) Variable = 19p loss mutation analysis
D73V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    39  30
  19P LOSS WILD-TYPE 131  51
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                69                182 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                30                 51 
$`19P LOSS MUTATED`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4402 TCGA-05-4415 TCGA-05-4420 
        3.98        14.01         9.96         8.02         2.96        29.95 
TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-35-4123 
       30.02        26.01        25.02        24.00        15.02         5.95 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-44-5644 TCGA-44-6146 TCGA-44-6779 
       49.02        35.28        11.64        16.37         9.93        16.41 
TCGA-44-7669 TCGA-44-7671 TCGA-49-4486 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 
       18.87        17.59        76.21        14.07         8.81        29.46 
TCGA-49-4514 TCGA-49-6742 TCGA-50-5051 TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 
       43.20        15.02        14.96         8.78        35.87         8.45 
TCGA-50-5944 TCGA-50-6597 TCGA-50-7109 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       12.26        33.37         8.38        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6968 TCGA-55-6972 TCGA-55-6975 TCGA-55-7576 TCGA-55-7910 
        2.86        42.48        48.49         3.88         1.32         6.48 
TCGA-64-1676 TCGA-64-5774 TCGA-64-5778 TCGA-67-3770 TCGA-67-3774 TCGA-69-7764 
       56.81        83.84        30.44         0.99         0.59        13.61 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-78-7146 TCGA-78-7147 
       20.28        15.35         0.46         1.25         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7156 TCGA-78-7166 TCGA-78-7167 
       20.58        35.93        21.86        32.09         8.48        88.11 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-86-7713 TCGA-91-6836 TCGA-91-6849 
       31.20         8.02        10.75         0.23         0.36         0.92 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.12         0.07         5.36 

$`19P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4405 
       38.07        19.92        37.02        24.03        47.05        20.05 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4426 TCGA-05-4430 TCGA-05-5420 TCGA-05-5423 
       14.93         8.98        26.01        25.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
        2.96         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4632 TCGA-38-6178 
       47.61        85.32        37.71        28.37        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7672 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       18.31        17.46        13.74        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4512 TCGA-49-6743 TCGA-49-6744 
       35.54        46.72        32.84        29.75        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
        4.93         0.03        20.48        71.47        48.82        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5933 TCGA-50-5935 
        9.76        49.28         8.05         9.27        77.88        21.47 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         9.37         4.44        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-53-7624 
       25.51        11.05        12.16         6.21         0.72        35.11 
TCGA-53-7626 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       31.89        48.62         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       15.25         0.92         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 
        0.59         1.12         0.13         3.12         1.28         1.02 
TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 
        0.79         0.62         0.53         0.69         0.10        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 
       39.09        55.40        37.02        44.38         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
       37.64         7.33         1.97         0.59         2.04         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 
        0.69        13.87         5.06         6.12        22.68         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4675 TCGA-73-4676 
        2.01        52.57        23.38        29.95         1.32         4.01 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
      163.10        27.16        39.48        24.99        19.50        38.50 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7220 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 
       26.53        53.33        28.96        10.55        32.68         0.36 
TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.89         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6847 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-97-7546 
       26.93         4.18         1.02         9.76         4.18        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.07               0.03 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             88.11             223.96 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            15.020             12.145 
[1] "0.1 - 88.1 (15.0)"  "0.0 - 224.0 (12.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     33   47
  19P LOSS WILD-TYPE  121   84
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE               33                121
  MALE                 47                 84
D73V4, continuous
D73V5, multiclass
D73V6, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1               16                 63
  T2               52                116
  T3                6                 16
  T4                6                  9
D73V7, multiclass
       clus
vv      19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0                  46                123
  N1                  24                 34
  N2+N3                9                 43
D73V8, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0               59                141
  M1                7                  9
  MX               12                 50
D73V9, multiclass
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  I                 37                110
  II                24                 37
  III               13                 43
  IV                 6                 10
D73V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      4   76
  19P LOSS WILD-TYPE    9  196
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 4                  9
  YES               76                196
D73V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      9   71
  19P LOSS WILD-TYPE   34  171
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 9                 34
  YES               71                171

Clustering(74) Variable = 19q loss mutation analysis
D74V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    20  19
  19Q LOSS WILD-TYPE 150  62
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                39                212 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                19                 62 
$`19Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4402 TCGA-05-4415 TCGA-05-4420 TCGA-05-4434 
        3.98         9.96         8.02         2.96        29.95        15.02 
TCGA-38-4630 TCGA-44-5644 TCGA-44-6779 TCGA-44-7671 TCGA-49-4486 TCGA-49-4505 
       35.28        16.37        16.41        17.59        76.21        14.07 
TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-50-5051 TCGA-50-5932 TCGA-50-5944 
        8.81        43.20        15.02        14.96        35.87        12.26 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 TCGA-55-6972 
       33.37        23.05        45.17         2.86        42.48        48.49 
TCGA-55-6975 TCGA-64-1676 TCGA-67-3770 TCGA-73-4666 TCGA-73-4670 TCGA-73-4677 
        3.88        56.81         0.99        20.28         0.46         1.25 
TCGA-78-7146 TCGA-78-7149 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-91-6836 
        5.65        35.93        88.11        31.20         8.02         0.36 
TCGA-91-6849 TCGA-95-7039 TCGA-95-7567 
        0.92         1.12         5.36 

$`19Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
       20.05        14.93         8.98        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        25.02        24.00         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
       47.61        85.32        37.71        49.02        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
        5.42         2.70        63.72        32.45        36.49         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7672 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       13.74        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       32.84        29.46        29.75        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27         8.78        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         9.37         4.44        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 
        3.88        25.51        11.05        12.16         6.21         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 TCGA-55-1595 TCGA-55-6543 
        8.38        35.11        31.89        38.73        48.62         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6978 
       32.61         0.79        40.70        15.25         0.92         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 
        3.12         1.32         1.28         1.02         0.79         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 
        0.53         6.48         0.69         0.10        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        37.64         7.33         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       22.68        13.61         4.24         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 
       29.95        15.35         1.32         4.01       163.10        27.16 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       19.27        20.58        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 
      104.15       223.96         8.48        26.53        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       28.96        10.55        32.68         0.36         0.89         0.23 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
        1.22        41.33         0.03         1.28         1.15        26.93 
TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-97-7546 
        4.18         1.02         9.76         4.18         0.07        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-99-7458 
        0.72         8.22 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.36               0.03 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             88.11             223.96 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            15.020             12.825 
[1] "0.4 - 88.1 (15.0)"  "0.0 - 224.0 (12.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     21   23
  19Q LOSS WILD-TYPE  133  108
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE               21                133
  MALE                 23                108
D74V4, continuous
[1] "Remove cluster labels:" "19Q LOSS MUTATED"      
clus
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 2                 23 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-71-6725 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4668 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-86-7701 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7714 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-93-7348         TCGA-99-7458 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
D74V5, multiclass
D74V6, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1               10                 69
  T2               25                143
  T3                4                 18
  T4                5                 10
D74V7, multiclass
       clus
vv      19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0                  25                144
  N1                  12                 46
  N2+N3                6                 46
D74V8, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0               27                173
  M1                6                 10
  MX                9                 53
D74V9, multiclass
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  I                 21                126
  II                 8                 53
  III               10                 46
  IV                 5                 11
D74V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      3   41
  19Q LOSS WILD-TYPE   10  231
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 3                 10
  YES               41                231
D74V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      6   38
  19Q LOSS WILD-TYPE   37  204
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 6                 37
  YES               38                204

Clustering(75) Variable = 20p loss mutation analysis
D75V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    18  13
  20P LOSS WILD-TYPE 152  68
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                31                220 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                13                 68 
$`20P LOSS MUTATED`
TCGA-05-4405 TCGA-05-4415 TCGA-05-5423 TCGA-44-2665 TCGA-44-6779 TCGA-49-4505 
       20.05         2.96         4.96        13.15        16.41        14.07 
TCGA-49-4512 TCGA-50-5051 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 
       29.75        14.96        77.88         8.45        15.12        12.26 
TCGA-50-6594 TCGA-50-6597 TCGA-53-7624 TCGA-55-1594 TCGA-55-6968 TCGA-55-6984 
       12.16        33.37        35.11        38.73        42.48        24.99 
TCGA-55-7725 TCGA-55-7903 TCGA-55-7907 TCGA-64-5781 TCGA-67-3773 TCGA-67-6216 
        1.28         0.62         0.53        37.64         2.04         0.69 
TCGA-73-4666 TCGA-73-4670 TCGA-78-7145 TCGA-78-7146 TCGA-78-7535 TCGA-91-6828 
       20.28         0.46        27.16         5.65        31.20         1.22 
TCGA-91-6848 
        4.18 

$`20P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       24.03        47.05         8.02        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       26.30        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.21         4.60         3.48        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        36.49         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 
       35.87        21.47         9.37         4.44        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 
        3.88        25.51        11.05         6.21         0.72         8.38 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       31.89        23.05        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
       32.61         0.79        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       60.03        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7727 TCGA-55-7728 TCGA-55-7910 
        0.13         3.12         1.32         1.02         0.79         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
        0.69         0.10        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         1.97         0.59         0.59         0.89 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 
        2.01        52.57        23.38        29.95        15.35         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
        4.01         1.25       163.10        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        26.53         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       28.96        10.55        32.68         0.36         0.89         0.23 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        0.92         1.02         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.46               0.03 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             77.88             223.96 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             14.07              13.07 
[1] "0.5 - 77.9 (14.1)"  "0.0 - 224.0 (13.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     22   20
  20P LOSS WILD-TYPE  132  111
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE               22                132
  MALE                 20                111
D75V4, continuous
[1] "Remove cluster labels:" "20P LOSS MUTATED"      
clus
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 2                 23 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7910 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4668         TCGA-73-4676 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-75-5122         TCGA-86-7701         TCGA-86-7711 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-91-6849 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-93-7348         TCGA-99-7458 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
D75V5, multiclass
D75V6, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1                9                 70
  T2               28                140
  T3                1                 21
  T4                4                 11
D75V7, multiclass
       clus
vv      20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0                  18                151
  N1                  12                 46
  N2+N3               12                 40
D75V8, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0               28                172
  M1                5                 11
  MX                9                 53
D75V9, multiclass
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  I                 15                132
  II                11                 50
  III               12                 44
  IV                 4                 12
D75V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      1   41
  20P LOSS WILD-TYPE   12  231
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 1                 12
  YES               41                231
D75V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      6   36
  20P LOSS WILD-TYPE   37  206
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 6                 37
  YES               36                206

Clustering(76) Variable = 20q loss mutation analysis
D76V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED     7   3
  20Q LOSS WILD-TYPE 163  78
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                10                241 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                 78 
$`20Q LOSS MUTATED`
TCGA-05-4405 TCGA-05-4415 TCGA-50-5051 TCGA-50-5936 TCGA-53-7624 TCGA-67-3773 
       20.05         2.96        14.96         8.45        35.11         2.04 
TCGA-67-6216 TCGA-73-4675 TCGA-78-7146 TCGA-91-6828 
        0.69         1.32         5.65         1.22 

$`20Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       24.03        47.05         8.02        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
        4.93         0.03        20.48        71.47        48.82        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-55-1592 
        6.21        33.37         0.72         8.38        31.89        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        0.79         0.62         0.53         6.48         0.69         0.10 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        37.64         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 
        0.99         1.97         0.59         0.59         0.89        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
        5.06         6.12        22.68        13.61         4.24         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 
        4.01         1.25       163.10        27.16        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 
       53.33        10.75        28.96        10.55        32.68         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.89         0.23        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 
        4.18         1.12         0.07         5.36        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              0.69               0.03 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             35.11             223.96 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             4.305             13.740 
[1] "0.7 - 35.1 (4.3)"   "0.0 - 224.0 (13.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20Q LOSS MUTATED"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20Q LOSS MUTATED"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "2.6"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      7    7
  20Q LOSS WILD-TYPE  147  124
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE                7                147
  MALE                  7                124
D76V4, continuous
D76V5, multiclass
D76V6, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                3                 76
  T2                9                159
  T3                1                 21
  T4                1                 14
D76V7, multiclass
       clus
vv      20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0                   7                162
  N1                   3                 55
  N2+N3                4                 48
D76V8, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0               12                188
  M1                1                 15
  MX                1                 61
D76V9, multiclass
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  I                  6                141
  II                 2                 59
  III                5                 51
  IV                 1                 15
D76V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0   14
  20Q LOSS WILD-TYPE   13  258
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 0                 13
  YES               14                258
D76V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      1   13
  20Q LOSS WILD-TYPE   42  229
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 1                 42
  YES               13                229

Clustering(77) Variable = 21q loss mutation analysis
D77V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    23  13
  21Q LOSS WILD-TYPE 147  68
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                36                215 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                13                 68 
$`21Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4417 TCGA-05-4420 TCGA-05-4432 TCGA-44-5643 TCGA-44-5644 
        9.96        14.93        29.95        25.02         3.48        16.37 
TCGA-44-6779 TCGA-44-7660 TCGA-50-5051 TCGA-50-5932 TCGA-50-5935 TCGA-50-5944 
       16.41         5.33        14.96        35.87        21.47        12.26 
TCGA-50-7109 TCGA-55-1592 TCGA-55-1594 TCGA-55-5899 TCGA-55-6968 TCGA-55-6972 
        8.38        23.05        38.73         2.86        42.48        48.49 
TCGA-55-7910 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-69-7760 TCGA-73-4659 
        6.48        55.40        83.84         0.10         5.06        23.38 
TCGA-73-4668 TCGA-73-4670 TCGA-78-7146 TCGA-78-7148 TCGA-78-7153 TCGA-78-7154 
       15.35         0.46         5.65        20.58        24.99        19.50 
TCGA-78-7167 TCGA-78-7536 TCGA-86-7713 TCGA-91-7771 TCGA-95-7043 TCGA-97-7547 
       88.11         8.02         0.23         1.02         0.07        47.18 

$`21Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4424 
       47.05         8.02        20.05         2.96         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       36.49         9.80         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.46        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
        4.93         0.03        20.48        71.47        48.82        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 
        9.76        49.28         8.05         9.27         8.78        77.88 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         9.37         4.44        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
        0.72        35.11        31.89        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 
       32.61         0.79        40.70        15.25         0.92         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 
        0.62         0.53         0.69         0.10        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        44.38        30.44        16.67        37.64 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89         0.69        13.87         6.12        22.68        13.61 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 
        4.24         2.01        52.57        29.95        20.28         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 
        4.01         1.25       163.10        27.16        19.27        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       21.86        39.48        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 
       22.29         7.04       104.15       223.96         8.48        26.53 
TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
       31.20        53.33        10.75        28.96        10.55        32.68 
TCGA-86-7701 TCGA-86-7711 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.36         0.89         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 
        1.15         0.36        26.93         4.18         0.92         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        4.18         1.12         5.36        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.07               0.03 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             88.11             223.96 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             15.86              12.66 
[1] "0.1 - 88.1 (15.9)"  "0.0 - 224.0 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
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        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     16   26
  21Q LOSS WILD-TYPE  138  105
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               16                138
  MALE                 26                105
D77V4, continuous
D77V5, multiclass
D77V6, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1               10                 69
  T2               26                142
  T3                3                 19
  T4                3                 12
D77V7, multiclass
       clus
vv      21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0                  26                143
  N1                   7                 51
  N2+N3                9                 43
D77V8, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0               30                170
  M1                3                 13
  MX                8                 54
D77V9, multiclass
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  I                 21                126
  II                 8                 53
  III               11                 45
  IV                 2                 14
D77V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      2   40
  21Q LOSS WILD-TYPE   11  232
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 2                 11
  YES               40                232
D77V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      6   36
  21Q LOSS WILD-TYPE   37  206
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 6                 37
  YES               36                206

Clustering(78) Variable = 22q loss mutation analysis
D78V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    33  22
  22Q LOSS WILD-TYPE 137  59
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                55                196 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                22                 59 
$`22Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4418 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
        9.96        24.03         8.98        26.01        25.02        24.00 
TCGA-35-5375 TCGA-38-4628 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.68        49.02         6.21         4.60         3.48        16.37 
TCGA-44-6778 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-50-5051 
       36.49        46.72        14.07         8.81        29.46        14.96 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-6591 
        9.27        35.87        21.47         8.45        15.12         3.88 
TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 TCGA-55-5899 TCGA-55-6968 TCGA-55-6972 
       33.37         8.38        35.11         2.86        42.48        48.49 
TCGA-55-7903 TCGA-55-7910 TCGA-64-1676 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 
        0.62         6.48        56.81        55.40        44.38        83.84 
TCGA-64-5778 TCGA-64-5779 TCGA-69-7760 TCGA-69-7764 TCGA-73-4662 TCGA-73-4668 
       30.44        16.67         5.06        13.61        29.95        15.35 
TCGA-73-4677 TCGA-78-7146 TCGA-78-7159 TCGA-78-7163 TCGA-78-7167 TCGA-78-7535 
        1.25         5.65        40.11       223.96        88.11        31.20 
TCGA-78-7536 TCGA-86-7711 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 TCGA-95-7039 
        8.02         0.89        41.33         1.28         0.36         1.12 
TCGA-95-7567 
        5.36 

$`22Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       26.01        25.02        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        8.32         6.44         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4506 TCGA-49-4512 TCGA-49-4514 
       28.57        12.66        35.54        32.84        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5931 TCGA-50-5933 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.78        77.88         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 
       42.31        25.51        11.05        12.16         6.21         0.72 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       31.89        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 
       32.61         0.79        40.70        15.25         0.92         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.53         0.69         0.10        20.65        39.09        37.02 
TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        37.64         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 
        2.04         0.59         0.89         0.69        13.87         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
       22.68         4.24         2.01        52.57        23.38        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
        0.46         1.32         4.01       163.10        27.16        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       38.50        32.09         5.88        22.29         7.04       104.15 
TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
        8.48        26.53        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-86-7701 TCGA-86-7713 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 
       32.68         0.36         0.23         1.22         0.03         1.15 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        0.07        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        5.95         0.59         0.72         8.22 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.36               0.03 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            223.96             163.10 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             15.35              12.21 
[1] "0.4 - 224.0 (15.3)" "0.0 - 163.1 (12.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-44-2655         TCGA-44-2656 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-49-4486 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-55-1592         TCGA-55-1594 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7727         TCGA-55-7728 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-64-1676 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-78-7143         TCGA-78-7145 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7146         TCGA-78-7147         TCGA-78-7148 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7149         TCGA-78-7150         TCGA-78-7152 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7153         TCGA-78-7154         TCGA-78-7155 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7156         TCGA-78-7158         TCGA-78-7159 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-78-7160         TCGA-78-7161         TCGA-78-7162 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7163         TCGA-78-7166         TCGA-78-7167 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-78-7220         TCGA-78-7535         TCGA-78-7536 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-78-7537         TCGA-78-7539         TCGA-78-7540 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7542         TCGA-78-7633         TCGA-86-7701 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-91-6828 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-95-7039 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-95-7043         TCGA-95-7567         TCGA-97-7546 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-97-7547         TCGA-97-7552         TCGA-97-7553 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-7554         TCGA-97-7937         TCGA-97-7938 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-7941         TCGA-99-7458 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D78V2, continuous
D78V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     28   36
  22Q LOSS WILD-TYPE  126   95
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               28                126
  MALE                 36                 95
D78V4, continuous
D78V5, multiclass
D78V6, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1               16                 63
  T2               41                127
  T3                5                 17
  T4                2                 13
D78V7, multiclass
       clus
vv      22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0                  37                132
  N1                  14                 44
  N2+N3               12                 40
D78V8, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0               50                150
  M1                4                 12
  MX                9                 53
D78V9, multiclass
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  I                 33                114
  II                14                 47
  III               14                 42
  IV                 3                 13
D78V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      4   60
  22Q LOSS WILD-TYPE    9  212
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 4                  9
  YES               60                212
D78V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     10   54
  22Q LOSS WILD-TYPE   33  188
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                10                 33
  YES               54                188

Clustering(79) Variable = Xq loss mutation analysis
D79V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED     2   4
  XQ LOSS WILD-TYPE 168  77
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                6               245 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                4                77 
$`XQ LOSS MUTATED`
TCGA-38-4628 TCGA-49-4507 TCGA-55-1592 TCGA-55-1595 TCGA-69-7764 TCGA-78-7536 
       49.02         8.81        23.05        48.62        13.61         8.02 

$`XQ LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       47.61        85.32        37.71        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
       18.87        17.46        17.59        13.74        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       35.11        31.89        38.73        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        1.02         0.79         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
        0.10        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        37.64 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.24         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
       15.35         0.46         1.32         4.01         1.25       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       27.16         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       88.11        26.53        31.20        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 
       10.55        32.68         0.36         0.89         0.23         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.07         5.36        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             8.02              0.03 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            49.02            223.96 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            18.33             13.15 
[1] "8.0 - 49.0 (18.3)"  "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-71-6725        TCGA-73-4658 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-91-6828 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      3    3
  XQ LOSS WILD-TYPE  151  128
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE               3               151
  MALE                 3               128
D79V4, continuous
D79V5, multiclass
D79V6, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1               2                77
  T2               3               165
  T3               1                21
  T4               0                15
D79V7, multiclass
       clus
vv      XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0                  3               166
  N1                  2                56
  N2+N3               1                51
D79V8, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0               6               194
  M1               0                16
  MX               0                62
D79V9, multiclass
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  I                 3               144
  II                1                60
  III               2                54
  IV                0                16
D79V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      2    4
  XQ LOSS WILD-TYPE   11  268
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                2                11
  YES               4               268
D79V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      1    5
  XQ LOSS WILD-TYPE   42  237
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                1                42
  YES               5               237
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
