
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/159070/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/STAD/1669740/1.GDAC_clinicalDataPicker.Finished/STAD.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=STAD", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"      "-oT=STAD"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=159, in cluster file=161, common to both=158
[1]  68 158
[1] "Amp Peak  1(1p36.22) mutation analysis"
[1] 3
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            25                            133 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            25                            133 
[1] "Amp Peak  2(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           55                           103 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           55                           103 
[1] "Amp Peak  3(1q42.3) mutation analysis"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           52                           106 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           52                           106 
[1] "Amp Peak  4(3q26.2) mutation analysis"
[1] 3
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                           55                           103 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                           55                           103 
[1] "Amp Peak  5(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            51                            107 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            51                            107 
[1] "Amp Peak  6(5p13.1) mutation analysis"
[1] 3
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                           50                           108 
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                           50                           108 
[1] "Amp Peak  7(6p21.1) mutation analysis"
[1] 3
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                           52                           106 
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                           52                           106 
[1] "Amp Peak  8(6q12) mutation analysis"
[1] 3
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         38                         120 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         38                         120 
[1] "Amp Peak  9(6q23.3) mutation analysis"
[1] 3
  AMP PEAK  9(6Q23.3) MUTATED AMP PEAK  9(6Q23.3) WILD-TYPE 
                           40                           118 
  AMP PEAK  9(6Q23.3) MUTATED AMP PEAK  9(6Q23.3) WILD-TYPE 
                           40                           118 
[1] "Amp Peak 10(7p11.2) mutation analysis"
[1] 3
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                           75                            83 
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                           75                            83 
[1] "Amp Peak 11(7q21.2) mutation analysis"
[1] 3
  AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE 
                           79                            79 
  AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE 
                           79                            79 
[1] "Amp Peak 12(8p23.1) mutation analysis"
[1] 3
  AMP PEAK 12(8P23.1) MUTATED AMP PEAK 12(8P23.1) WILD-TYPE 
                           62                            96 
  AMP PEAK 12(8P23.1) MUTATED AMP PEAK 12(8P23.1) WILD-TYPE 
                           62                            96 
[1] "Amp Peak 13(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           114                             44 
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           114                             44 
[1] "Amp Peak 14(9p24.1) mutation analysis"
[1] 3
  AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE 
                           26                           132 
  AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE 
                           26                           132 
[1] "Amp Peak 15(9p13.3) mutation analysis"
[1] 3
  AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE 
                           33                           125 
  AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE 
                           33                           125 
[1] "Amp Peak 16(9q34.3) mutation analysis"
[1] 3
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                           43                           115 
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                           43                           115 
[1] "Amp Peak 17(10q26.13) mutation analysis"
[1] 3
  AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE 
                             35                             123 
  AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE 
                             35                             123 
[1] "Amp Peak 18(11p13) mutation analysis"
[1] 3
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          29                          129 
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          29                          129 
[1] "Amp Peak 19(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE 
                            34                            124 
  AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE 
                            34                            124 
[1] "Amp Peak 20(12p12.1) mutation analysis"
[1] 3
  AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE 
                            41                            117 
  AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE 
                            41                            117 
[1] "Amp Peak 21(12q15) mutation analysis"
[1] 3
  AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE 
                          39                          119 
  AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE 
                          39                          119 
[1] "Amp Peak 22(13q12.3) mutation analysis"
[1] 3
  AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE 
                            65                             93 
  AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE 
                            65                             93 
[1] "Amp Peak 23(13q22.1) mutation analysis"
[1] 3
  AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE 
                            74                             84 
  AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE 
                            74                             84 
[1] "Amp Peak 24(15q26.1) mutation analysis"
[1] 3
  AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE 
                            45                            113 
  AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE 
                            45                            113 
[1] "Amp Peak 25(17q12) mutation analysis"
[1] 3
  AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE 
                          46                          112 
  AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE 
                          46                          112 
[1] "Amp Peak 26(18q11.2) mutation analysis"
[1] 3
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                            52                            106 
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                            52                            106 
[1] "Amp Peak 27(19q12) mutation analysis"
[1] 3
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                          48                          110 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                          48                          110 
[1] "Amp Peak 28(20q13.2) mutation analysis"
[1] 3
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                           109                             49 
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                           109                             49 
[1] "Amp Peak 29(Xq27.3) mutation analysis"
[1] 3
  AMP PEAK 29(XQ27.3) MUTATED AMP PEAK 29(XQ27.3) WILD-TYPE 
                           35                           123 
  AMP PEAK 29(XQ27.3) MUTATED AMP PEAK 29(XQ27.3) WILD-TYPE 
                           35                           123 
[1] "Del Peak  1(1p36.11) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            45                            113 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            45                            113 
[1] "Del Peak  2(1q44) mutation analysis"
[1] 3
  DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE 
                         12                         146 
  DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE 
                         12                         146 
[1] "Del Peak  3(2q32.1) mutation analysis"
[1] 3
  DEL PEAK  3(2Q32.1) MUTATED DEL PEAK  3(2Q32.1) WILD-TYPE 
                           19                           139 
  DEL PEAK  3(2Q32.1) MUTATED DEL PEAK  3(2Q32.1) WILD-TYPE 
                           19                           139 
[1] "Del Peak  4(2q33.3) mutation analysis"
[1] 3
  DEL PEAK  4(2Q33.3) MUTATED DEL PEAK  4(2Q33.3) WILD-TYPE 
                           15                           143 
  DEL PEAK  4(2Q33.3) MUTATED DEL PEAK  4(2Q33.3) WILD-TYPE 
                           15                           143 
[1] "Del Peak  5(2q37.2) mutation analysis"
[1] 3
  DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE 
                           21                           137 
  DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE 
                           21                           137 
[1] "Del Peak  6(3p26.1) mutation analysis"
[1] 3
  DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE 
                           41                           117 
  DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE 
                           41                           117 
[1] "Del Peak  7(3p14.2) mutation analysis"
[1] 3
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           56                           102 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           56                           102 
[1] "Del Peak  8(3q26.31) mutation analysis"
[1] 3
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                            15                            143 
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                            15                            143 
[1] "Del Peak  9(4q22.1) mutation analysis"
[1] 3
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                           62                            96 
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                           62                            96 
[1] "Del Peak 10(4q34.3) mutation analysis"
[1] 3
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                           65                            93 
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                           65                            93 
[1] "Del Peak 11(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                           52                           106 
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                           52                           106 
[1] "Del Peak 12(6p25.3) mutation analysis"
[1] 3
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           40                           118 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           40                           118 
[1] "Del Peak 13(6q26) mutation analysis"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         36                         122 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         36                         122 
[1] "Del Peak 14(7q31.1) mutation analysis"
[1] 3
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                           21                           137 
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                           21                           137 
[1] "Del Peak 15(7q36.3) mutation analysis"
[1] 3
  DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE 
                           29                           129 
  DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE 
                           29                           129 
[1] "Del Peak 16(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE 
                           46                           112 
  DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE 
                           46                           112 
[1] "Del Peak 17(9p23) mutation analysis"
[1] 3
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                         69                          89 
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                         69                          89 
[1] "Del Peak 18(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                           65                            93 
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                           65                            93 
[1] "Del Peak 19(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                             41                             117 
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                             41                             117 
[1] "Del Peak 20(11p15.5) mutation analysis"
[1] 3
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                            39                            119 
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                            39                            119 
[1] "Del Peak 21(11q23.2) mutation analysis"
[1] 3
  DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE 
                            33                            125 
  DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE 
                            33                            125 
[1] "Del Peak 22(12p13.31) mutation analysis"
[1] 3
  DEL PEAK 22(12P13.31) MUTATED DEL PEAK 22(12P13.31) WILD-TYPE 
                             29                             129 
  DEL PEAK 22(12P13.31) MUTATED DEL PEAK 22(12P13.31) WILD-TYPE 
                             29                             129 
[1] "Del Peak 23(13q33.1) mutation analysis"
[1] 3
  DEL PEAK 23(13Q33.1) MUTATED DEL PEAK 23(13Q33.1) WILD-TYPE 
                            20                            138 
  DEL PEAK 23(13Q33.1) MUTATED DEL PEAK 23(13Q33.1) WILD-TYPE 
                            20                            138 
[1] "Del Peak 24(14q23.3) mutation analysis"
[1] 3
  DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE 
                            42                            116 
  DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE 
                            42                            116 
[1] "Del Peak 25(14q32.33) mutation analysis"
[1] 3
  DEL PEAK 25(14Q32.33) MUTATED DEL PEAK 25(14Q32.33) WILD-TYPE 
                             42                             116 
  DEL PEAK 25(14Q32.33) MUTATED DEL PEAK 25(14Q32.33) WILD-TYPE 
                             42                             116 
[1] "Del Peak 26(15q11.2) mutation analysis"
[1] 3
  DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE 
                            44                            114 
  DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE 
                            44                            114 
[1] "Del Peak 27(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE 
                            25                            133 
  DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE 
                            25                            133 
[1] "Del Peak 28(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE 
                            62                             96 
  DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE 
                            62                             96 
[1] "Del Peak 29(17p12) mutation analysis"
[1] 3
  DEL PEAK 29(17P12) MUTATED DEL PEAK 29(17P12) WILD-TYPE 
                          60                           98 
  DEL PEAK 29(17P12) MUTATED DEL PEAK 29(17P12) WILD-TYPE 
                          60                           98 
[1] "Del Peak 30(17q21.2) mutation analysis"
[1] 3
  DEL PEAK 30(17Q21.2) MUTATED DEL PEAK 30(17Q21.2) WILD-TYPE 
                            21                            137 
  DEL PEAK 30(17Q21.2) MUTATED DEL PEAK 30(17Q21.2) WILD-TYPE 
                            21                            137 
[1] "Del Peak 31(17q24.3) mutation analysis"
[1] 3
  DEL PEAK 31(17Q24.3) MUTATED DEL PEAK 31(17Q24.3) WILD-TYPE 
                            26                            132 
  DEL PEAK 31(17Q24.3) MUTATED DEL PEAK 31(17Q24.3) WILD-TYPE 
                            26                            132 
[1] "Del Peak 32(18q21.2) mutation analysis"
[1] 3
  DEL PEAK 32(18Q21.2) MUTATED DEL PEAK 32(18Q21.2) WILD-TYPE 
                            67                             91 
  DEL PEAK 32(18Q21.2) MUTATED DEL PEAK 32(18Q21.2) WILD-TYPE 
                            67                             91 
[1] "Del Peak 33(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE 
                            57                            101 
  DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE 
                            57                            101 
[1] "Del Peak 34(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE 
                            30                            128 
  DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE 
                            30                            128 
[1] "Del Peak 35(21q11.2) mutation analysis"
[1] 3
  DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE 
                            54                            104 
  DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE 
                            54                            104 
[1] "Del Peak 36(22q13.31) mutation analysis"
[1] 3
  DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE 
                             53                             105 
  DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE 
                             53                             105 
[1] "Del Peak 37(Xp22.2) mutation analysis"
[1] 3
  DEL PEAK 37(XP22.2) MUTATED DEL PEAK 37(XP22.2) WILD-TYPE 
                           31                           127 
  DEL PEAK 37(XP22.2) MUTATED DEL PEAK 37(XP22.2) WILD-TYPE 
                           31                           127 
[1] "Del Peak 38(Xp21.1) mutation analysis"
[1] 3
  DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE 
                           30                           128 
  DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE 
                           30                           128 
[1] "Del Peak 39(Xq21.33) mutation analysis"
[1] 3
  DEL PEAK 39(XQ21.33) MUTATED DEL PEAK 39(XQ21.33) WILD-TYPE 
                            25                            133 
  DEL PEAK 39(XQ21.33) MUTATED DEL PEAK 39(XQ21.33) WILD-TYPE 
                            25                            133 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "HISTOLOGICALTYPE"                      
[10] "PATHOLOGICSPREAD(PT)"                  
[11] "PATHOLOGICSPREAD(PN)"                  
[12] "PATHOLOGICSPREAD(M)"                   
[13] "TUMORSTAGE"                            
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "NEOADJUVANTTHERAPY"                    
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 158 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4187 TCGA-BR-4188 
         171            3           NA           NA           NA           NA 
TCGA-BR-4190 TCGA-BR-4191 TCGA-BR-4194 TCGA-BR-4195 TCGA-BR-4199 TCGA-BR-4200 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4201 TCGA-BR-4253 TCGA-BR-4255 TCGA-BR-4256 TCGA-BR-4257 TCGA-BR-4259 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4261 TCGA-BR-4265 TCGA-BR-4267 TCGA-BR-4277 TCGA-BR-4278 TCGA-BR-4279 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4280 TCGA-BR-4281 TCGA-BR-4284 TCGA-BR-4291 TCGA-BR-4292 TCGA-BR-4294 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4298 TCGA-BR-4357 TCGA-BR-4361 TCGA-BR-4362 TCGA-BR-4363 TCGA-BR-4366 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4367 TCGA-BR-4368 TCGA-BR-4369 TCGA-BR-4370 TCGA-BR-4371 TCGA-BR-4375 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4376 TCGA-BR-6452 TCGA-BR-6453 TCGA-BR-6454 TCGA-BR-6455 TCGA-BR-6456 
          NA           29           NA           NA           43           NA 
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 
          41           41           26           25           19           19 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
          52           66           30           37           20           34 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
          23           20            8           37           45           14 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 
          38            4           32           25           21            5 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-CD-5798 TCGA-CD-5799 
         138           30           29           21           25           21 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5804 TCGA-CG-4300 
          11           15            9            2           NA          609 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
          92          822          485           31         1611          245 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4442 TCGA-CG-4443 TCGA-CG-4444 
        1644          122          426           NA          912         1431 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
         580          366          669           31          273          576 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4475 TCGA-CG-4476 TCGA-CG-4477 
         215          365           31           NA           NA           31 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
          31          211           31           31           30          182 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
          29         2131          366          457          881          944 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
        1980          122         1674          641          243          263 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
         109          138          298          476          293          249 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
         210           21          181          201          126           51 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
         111          143          123           89          130           19 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 
         199           61           NA           12            6          109 
TCGA-HF-7131 TCGA-HF-7132 TCGA-HF-7133 TCGA-HF-7134 TCGA-HF-7136 TCGA-IN-7806 
          NA           NA           NA           NA           NA          209 
TCGA-IN-7808 TCGA-IP-7968 
         108           77 
Variable 1:'AGE':	nDistinctValues=45,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=15,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=81,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'HISTOLOGICAL.TYPE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'PATHOLOGY.T':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.N':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'TUMOR.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "HISTOLOGICAL.TYPE"                     
[4] "PATHOLOGY.T"                           
[5] "PATHOLOGY.N"                           
[6] "PATHOLOGICSPREAD(M)"                   
[7] "TUMOR.STAGE"                           
[8] "RADIATIONS.RADIATION.REGIMENINDICATION"
[9] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
24 37 43 26 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 158 columns, 1 survival variables, and 9 non-survival variables.
AGE, nv=45, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=6, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 6 52 61 18 
[1] "table(vv)"
vv
T1 T2 T3 T4 
 6 52 61 18 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
T1 T2 T3 T4 
 6 52 61 18 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T1 T2 T3 T4 
 6 52 61 18 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
44 57 24 15 
[1] "table(vv)"
vv
N0 N1 N2 N3 
44 57 24 15 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 N3 
44 57 24 15 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


N0 N1 N2 N3 
44 57 24 15 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 24  37  43  26 
[1] "table(vv)"
vv
  I  II III  IV 
 24  37  43  26 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 24  37  43  26 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 24  37  43  26 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p36.22) mutation analysis
D1V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK  1(1P36.22) MUTATED" 
[1] "hr="     "2.6e+08"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.22) MUTATED      4   21
  AMP PEAK  1(1P36.22) WILD-TYPE   56   77
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  FEMALE                            4                             56
  MALE                             21                             77
D1V4, multiclass
D1V5, multiclass
    clus
vv   AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  T1                            1                              5
  T2                            8                             44
  T3                           11                             50
  T4                            1                             17
D1V6, multiclass
    clus
vv   AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  N0                            4                             40
  N1                           11                             46
  N2                            3                             21
  N3                            3                             12
D1V7, multiclass
    clus
vv   AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  M0                           22                            112
  M1                            1                             15
  MX                            2                              6
D1V8, multiclass
     clus
vv    AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  I                              2                             22
  II                             7                             30
  III                            9                             34
  IV                             1                             25
D1V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.22) MUTATED     24    1
  AMP PEAK  1(1P36.22) WILD-TYPE  129    4
     clus
vv    AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  NO                             1                              4
  YES                           24                            129
D1V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.22) MUTATED     23    2
  AMP PEAK  1(1P36.22) WILD-TYPE  125    8
     clus
vv    AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  NO                             2                              8
  YES                           23                            125

Clustering(2) Variable = Amp Peak  2(1q21.3) mutation analysis
D2V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK  2(1Q21.3) WILD-TYPE" 
[1] "hr=" "1.4"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED     21   34
  AMP PEAK  2(1Q21.3) WILD-TYPE   39   64
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  FEMALE                          21                            39
  MALE                            34                            64
D2V4, multiclass
D2V5, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  T1                           2                             4
  T2                          19                            33
  T3                          20                            41
  T4                           5                            13
D2V6, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  N0                          11                            33
  N1                          18                            39
  N2                           7                            17
  N3                           7                             8
D2V7, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  M0                          47                            87
  M1                           5                            11
  MX                           3                             5
D2V8, multiclass
     clus
vv    AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  I                             8                            16
  II                           11                            26
  III                          12                            31
  IV                           10                            16
D2V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED     51    4
  AMP PEAK  2(1Q21.3) WILD-TYPE  102    1
     clus
vv    AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  NO                            4                             1
  YES                          51                           102
D2V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED     48    7
  AMP PEAK  2(1Q21.3) WILD-TYPE  100    3
     clus
vv    AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  NO                            7                             3
  YES                          48                           100

Clustering(3) Variable = Amp Peak  3(1q42.3) mutation analysis
D3V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK  3(1Q42.3) WILD-TYPE" 
[1] "hr=" "1.7"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED     18   34
  AMP PEAK  3(1Q42.3) WILD-TYPE   42   64
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  FEMALE                          18                            42
  MALE                            34                            64
D3V4, multiclass
D3V5, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  T1                           1                             5
  T2                          17                            35
  T3                          18                            43
  T4                           7                            11
D3V6, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  N0                          14                            30
  N1                          14                            43
  N2                           8                            16
  N3                           5                            10
D3V7, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  M0                          44                            90
  M1                           5                            11
  MX                           3                             5
D3V8, multiclass
     clus
vv    AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  I                             8                            16
  II                           12                            25
  III                           9                            34
  IV                           10                            16
D3V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED     49    3
  AMP PEAK  3(1Q42.3) WILD-TYPE  104    2
     clus
vv    AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  NO                            3                             2
  YES                          49                           104
D3V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED     46    6
  AMP PEAK  3(1Q42.3) WILD-TYPE  102    4
     clus
vv    AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  NO                            6                             4
  YES                          46                           102

Clustering(4) Variable = Amp Peak  4(3q26.2) mutation analysis
D4V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK  4(3Q26.2) WILD-TYPE" 
[1] "hr=" "1.3"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3Q26.2) MUTATED     17   38
  AMP PEAK  4(3Q26.2) WILD-TYPE   43   60
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  FEMALE                          17                            43
  MALE                            38                            60
D4V4, multiclass
D4V5, multiclass
    clus
vv   AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  T1                           0                             6
  T2                          15                            37
  T3                          20                            41
  T4                           9                             9
D4V6, multiclass
    clus
vv   AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  N0                          12                            32
  N1                          24                            33
  N2                           6                            18
  N3                           5                            10
D4V7, multiclass
    clus
vv   AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  M0                          45                            89
  M1                           6                            10
  MX                           4                             4
D4V8, multiclass
     clus
vv    AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  I                             6                            18
  II                           11                            26
  III                          17                            26
  IV                            8                            18
D4V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3Q26.2) MUTATED     53    2
  AMP PEAK  4(3Q26.2) WILD-TYPE  100    3
     clus
vv    AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  NO                            2                             3
  YES                          53                           100
D4V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3Q26.2) MUTATED     52    3
  AMP PEAK  4(3Q26.2) WILD-TYPE   96    7
     clus
vv    AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  NO                            3                             7
  YES                          52                            96

Clustering(5) Variable = Amp Peak  5(5p15.33) mutation analysis
D5V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-IP-7968 
"AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-IP-7968 
"AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-IP-7968 
"AMP PEAK  5(5P15.33) WILD-TYPE" 
[1] "hr=" "1.1"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(5P15.33) MUTATED     17   34
  AMP PEAK  5(5P15.33) WILD-TYPE   43   64
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  FEMALE                           17                             43
  MALE                             34                             64
D5V4, multiclass
D5V5, multiclass
    clus
vv   AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  T1                            0                              6
  T2                           18                             34
  T3                           21                             40
  T4                            5                             13
D5V6, multiclass
    clus
vv   AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  N0                           11                             33
  N1                           19                             38
  N2                            7                             17
  N3                            7                              8
D5V7, multiclass
    clus
vv   AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  M0                           44                             90
  M1                            5                             11
  MX                            2                              6
D5V8, multiclass
     clus
vv    AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  I                              6                             18
  II                            14                             23
  III                           11                             32
  IV                            11                             15
D5V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(5P15.33) MUTATED     48    3
  AMP PEAK  5(5P15.33) WILD-TYPE  105    2
     clus
vv    AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  NO                             3                              2
  YES                           48                            105
D5V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(5P15.33) MUTATED     45    6
  AMP PEAK  5(5P15.33) WILD-TYPE  103    4
     clus
vv    AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  NO                             6                              4
  YES                           45                            103

Clustering(6) Variable = Amp Peak  6(5p13.1) mutation analysis
D6V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK  6(5P13.1) WILD-TYPE" 
[1] "hr=" "1.1"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(5P13.1) MUTATED     16   34
  AMP PEAK  6(5P13.1) WILD-TYPE   44   64
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  FEMALE                          16                            44
  MALE                            34                            64
D6V4, multiclass
D6V5, multiclass
    clus
vv   AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  T1                           0                             6
  T2                          16                            36
  T3                          20                            41
  T4                           7                            11
D6V6, multiclass
    clus
vv   AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  N0                          10                            34
  N1                          21                            36
  N2                           5                            19
  N3                           7                             8
D6V7, multiclass
    clus
vv   AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  M0                          42                            92
  M1                           6                            10
  MX                           2                             6
D6V8, multiclass
     clus
vv    AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  I                             6                            18
  II                           14                            23
  III                           9                            34
  IV                           12                            14
D6V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(5P13.1) MUTATED     47    3
  AMP PEAK  6(5P13.1) WILD-TYPE  106    2
     clus
vv    AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  NO                            3                             2
  YES                          47                           106
D6V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(5P13.1) MUTATED     46    4
  AMP PEAK  6(5P13.1) WILD-TYPE  102    6
     clus
vv    AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  NO                            4                             6
  YES                          46                           102

Clustering(7) Variable = Amp Peak  7(6p21.1) mutation analysis
D7V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK  7(6P21.1) WILD-TYPE" 
[1] "hr="     "3.3e+08"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(6P21.1) MUTATED     18   34
  AMP PEAK  7(6P21.1) WILD-TYPE   42   64
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  FEMALE                          18                            42
  MALE                            34                            64
D7V4, multiclass
D7V5, multiclass
    clus
vv   AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  T1                           1                             5
  T2                          18                            34
  T3                          19                            42
  T4                           3                            15
D7V6, multiclass
    clus
vv   AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  N0                          15                            29
  N1                          22                            35
  N2                           5                            19
  N3                           3                            12
D7V7, multiclass
    clus
vv   AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  M0                          48                            86
  M1                           1                            15
  MX                           3                             5
D7V8, multiclass
     clus
vv    AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  I                             8                            16
  II                           16                            21
  III                           9                            34
  IV                            7                            19
D7V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(6P21.1) MUTATED     49    3
  AMP PEAK  7(6P21.1) WILD-TYPE  104    2
     clus
vv    AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  NO                            3                             2
  YES                          49                           104
D7V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(6P21.1) MUTATED     48    4
  AMP PEAK  7(6P21.1) WILD-TYPE  100    6
     clus
vv    AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  NO                            4                             6
  YES                          48                           100

Clustering(8) Variable = Amp Peak  8(6q12) mutation analysis
D8V1, survival
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-FP-7829                  TCGA-FP-7998 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-IP-7968 
"AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-FP-7829                  TCGA-FP-7998 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-IP-7968 
"AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-FP-7829                  TCGA-FP-7998 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-IP-7968 
"AMP PEAK  8(6Q12) WILD-TYPE" 
[1] "hr=" "2.4"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q12) MUTATED     16   22
  AMP PEAK  8(6Q12) WILD-TYPE   44   76
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  FEMALE                        16                          44
  MALE                          22                          76
D8V4, multiclass
D8V5, multiclass
    clus
vv   AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  T1                         1                           5
  T2                        10                          42
  T3                        17                          44
  T4                         4                          14
D8V6, multiclass
    clus
vv   AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  N0                        10                          34
  N1                        15                          42
  N2                         4                          20
  N3                         3                          12
D8V7, multiclass
    clus
vv   AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  M0                        32                         102
  M1                         3                          13
  MX                         3                           5
D8V8, multiclass
     clus
vv    AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  I                           6                          18
  II                          9                          28
  III                         9                          34
  IV                          6                          20
D8V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q12) MUTATED     36    2
  AMP PEAK  8(6Q12) WILD-TYPE  117    3
     clus
vv    AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  NO                          2                           3
  YES                        36                         117
D8V10, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q12) MUTATED     35    3
  AMP PEAK  8(6Q12) WILD-TYPE  113    7
     clus
vv    AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  NO                          3                           7
  YES                        35                         113

Clustering(9) Variable = Amp Peak  9(6q23.3) mutation analysis
D9V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK  9(6Q23.3) MUTATED"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  9(6Q23.3) MUTATED"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  9(6Q23.3) MUTATED"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK  9(6Q23.3) MUTATED"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  9(6Q23.3) MUTATED"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  9(6Q23.3) MUTATED"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK  9(6Q23.3) MUTATED"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  9(6Q23.3) MUTATED"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  9(6Q23.3) MUTATED"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  9(6Q23.3) MUTATED" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK  9(6Q23.3) WILD-TYPE" "AMP PEAK  9(6Q23.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  9(6Q23.3) WILD-TYPE"   "AMP PEAK  9(6Q23.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK  9(6Q23.3) WILD-TYPE" 
[1] "hr=" "5.5"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(6Q23.3) MUTATED     15   25
  AMP PEAK  9(6Q23.3) WILD-TYPE   45   73
        clus
vv       AMP PEAK  9(6Q23.3) MUTATED AMP PEAK  9(6Q23.3) WILD-TYPE
  FEMALE                          15                            45
  MALE                            25                            73
D9V4, multiclass
D9V5, multiclass
    clus
vv   AMP PEAK  9(6Q23.3) MUTATED AMP PEAK  9(6Q23.3) WILD-TYPE
  T1                           0                             6
  T2                          14                            38
  T3                          15                            46
  T4                           4                            14
D9V6, multiclass
    clus
vv   AMP PEAK  9(6Q23.3) MUTATED AMP PEAK  9(6Q23.3) WILD-TYPE
  N0                           9                            35
  N1                          16                            41
  N2                           5                            19
  N3                           4                            11
D9V7, multiclass
    clus
vv   AMP PEAK  9(6Q23.3) MUTATED AMP PEAK  9(6Q23.3) WILD-TYPE
  M0                          35                            99
  M1                           4                            12
  MX                           1                             7
D9V8, multiclass
     clus
vv    AMP PEAK  9(6Q23.3) MUTATED AMP PEAK  9(6Q23.3) WILD-TYPE
  I                             4                            20
  II                           13                            24
  III                           7                            36
  IV                            8                            18
D9V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(6Q23.3) MUTATED     38    2
  AMP PEAK  9(6Q23.3) WILD-TYPE  115    3
     clus
vv    AMP PEAK  9(6Q23.3) MUTATED AMP PEAK  9(6Q23.3) WILD-TYPE
  NO                            2                             3
  YES                          38                           115
D9V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(6Q23.3) MUTATED     37    3
  AMP PEAK  9(6Q23.3) WILD-TYPE  111    7
     clus
vv    AMP PEAK  9(6Q23.3) MUTATED AMP PEAK  9(6Q23.3) WILD-TYPE
  NO                            3                             7
  YES                          37                           111

Clustering(10) Variable = Amp Peak 10(7p11.2) mutation analysis
D10V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 10(7P11.2) MUTATED"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK 10(7P11.2) MUTATED" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 10(7P11.2) WILD-TYPE"   "AMP PEAK 10(7P11.2) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK 10(7P11.2) WILD-TYPE" 
[1] "hr=" "1"  
D10V2, continuous
D10V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(7P11.2) MUTATED     25   50
  AMP PEAK 10(7P11.2) WILD-TYPE   35   48
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  FEMALE                          25                            35
  MALE                            50                            48
D10V4, multiclass
D10V5, multiclass
    clus
vv   AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  T1                           4                             2
  T2                          20                            32
  T3                          30                            31
  T4                           7                            11
D10V6, multiclass
    clus
vv   AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  N0                          21                            23
  N1                          27                            30
  N2                          11                            13
  N3                           6                             9
D10V7, multiclass
    clus
vv   AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  M0                          66                            68
  M1                           5                            11
  MX                           4                             4
D10V8, multiclass
     clus
vv    AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  I                            14                            10
  II                           16                            21
  III                          20                            23
  IV                            9                            17
D10V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(7P11.2) MUTATED     74    1
  AMP PEAK 10(7P11.2) WILD-TYPE   79    4
     clus
vv    AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  NO                            1                             4
  YES                          74                            79
D10V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(7P11.2) MUTATED     71    4
  AMP PEAK 10(7P11.2) WILD-TYPE   77    6
     clus
vv    AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  NO                            4                             6
  YES                          71                            77

Clustering(11) Variable = Amp Peak 11(7q21.2) mutation analysis
D11V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK 11(7Q21.2) WILD-TYPE" 
[1] "hr=" "1.3"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7Q21.2) MUTATED     26   53
  AMP PEAK 11(7Q21.2) WILD-TYPE   34   45
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  FEMALE                          26                            34
  MALE                            53                            45
D11V4, multiclass
D11V5, multiclass
    clus
vv   AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  T1                           4                             2
  T2                          24                            28
  T3                          28                            33
  T4                           8                            10
D11V6, multiclass
    clus
vv   AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  N0                          21                            23
  N1                          24                            33
  N2                          14                            10
  N3                           8                             7
D11V7, multiclass
    clus
vv   AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  M0                          68                            66
  M1                           5                            11
  MX                           6                             2
D11V8, multiclass
     clus
vv    AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  I                            14                            10
  II                           17                            20
  III                          21                            22
  IV                            9                            17
D11V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7Q21.2) MUTATED     77    2
  AMP PEAK 11(7Q21.2) WILD-TYPE   76    3
     clus
vv    AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  NO                            2                             3
  YES                          77                            76
D11V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7Q21.2) MUTATED     73    6
  AMP PEAK 11(7Q21.2) WILD-TYPE   75    4
     clus
vv    AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  NO                            6                             4
  YES                          73                            75

Clustering(12) Variable = Amp Peak 12(8p23.1) mutation analysis
D12V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 12(8P23.1) WILD-TYPE"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 12(8P23.1) MUTATED"   "AMP PEAK 12(8P23.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK 12(8P23.1) MUTATED" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 12(8P23.1) WILD-TYPE" 
[1] "hr=" "1.2"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(8P23.1) MUTATED     29   33
  AMP PEAK 12(8P23.1) WILD-TYPE   31   65
        clus
vv       AMP PEAK 12(8P23.1) MUTATED AMP PEAK 12(8P23.1) WILD-TYPE
  FEMALE                          29                            31
  MALE                            33                            65
D12V4, multiclass
D12V5, multiclass
    clus
vv   AMP PEAK 12(8P23.1) MUTATED AMP PEAK 12(8P23.1) WILD-TYPE
  T1                           3                             3
  T2                          20                            32
  T3                          22                            39
  T4                           8                            10
D12V6, multiclass
    clus
vv   AMP PEAK 12(8P23.1) MUTATED AMP PEAK 12(8P23.1) WILD-TYPE
  N0                          17                            27
  N1                          23                            34
  N2                          10                            14
  N3                           5                            10
D12V7, multiclass
    clus
vv   AMP PEAK 12(8P23.1) MUTATED AMP PEAK 12(8P23.1) WILD-TYPE
  M0                          55                            79
  M1                           5                            11
  MX                           2                             6
D12V8, multiclass
     clus
vv    AMP PEAK 12(8P23.1) MUTATED AMP PEAK 12(8P23.1) WILD-TYPE
  I                             8                            16
  II                           18                            19
  III                          14                            29
  IV                           10                            16
D12V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(8P23.1) MUTATED     58    4
  AMP PEAK 12(8P23.1) WILD-TYPE   95    1
     clus
vv    AMP PEAK 12(8P23.1) MUTATED AMP PEAK 12(8P23.1) WILD-TYPE
  NO                            4                             1
  YES                          58                            95
D12V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(8P23.1) MUTATED     57    5
  AMP PEAK 12(8P23.1) WILD-TYPE   91    5
     clus
vv    AMP PEAK 12(8P23.1) MUTATED AMP PEAK 12(8P23.1) WILD-TYPE
  NO                            5                             5
  YES                          57                            91

Clustering(13) Variable = Amp Peak 13(8q24.21) mutation analysis
D13V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 13(8Q24.21) MUTATED"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 13(8Q24.21) MUTATED" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 13(8Q24.21) WILD-TYPE"   "AMP PEAK 13(8Q24.21) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK 13(8Q24.21) MUTATED" 
[1] "hr=" "1.5"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(8Q24.21) MUTATED     44   70
  AMP PEAK 13(8Q24.21) WILD-TYPE   16   28
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  FEMALE                           44                             16
  MALE                             70                             28
D13V4, multiclass
D13V5, multiclass
    clus
vv   AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  T1                            5                              1
  T2                           35                             17
  T3                           44                             17
  T4                           11                              7
D13V6, multiclass
    clus
vv   AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  N0                           30                             14
  N1                           39                             18
  N2                           19                              5
  N3                           10                              5
D13V7, multiclass
    clus
vv   AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  M0                           97                             37
  M1                           10                              6
  MX                            7                              1
D13V8, multiclass
     clus
vv    AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  I                             15                              9
  II                            29                              8
  III                           27                             16
  IV                            18                              8
D13V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(8Q24.21) MUTATED    111    3
  AMP PEAK 13(8Q24.21) WILD-TYPE   42    2
     clus
vv    AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  NO                             3                              2
  YES                          111                             42
D13V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(8Q24.21) MUTATED    108    6
  AMP PEAK 13(8Q24.21) WILD-TYPE   40    4
     clus
vv    AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  NO                             6                              4
  YES                          108                             40

Clustering(14) Variable = Amp Peak 14(9p24.1) mutation analysis
D14V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 14(9P24.1) MUTATED"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 14(9P24.1) MUTATED"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 14(9P24.1) MUTATED"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 14(9P24.1) MUTATED"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 14(9P24.1) MUTATED"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 14(9P24.1) MUTATED"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 14(9P24.1) MUTATED" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK 14(9P24.1) WILD-TYPE"   "AMP PEAK 14(9P24.1) MUTATED" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 14(9P24.1) WILD-TYPE" 
[1] "hr=" "1.1"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(9P24.1) MUTATED      9   17
  AMP PEAK 14(9P24.1) WILD-TYPE   51   81
        clus
vv       AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  FEMALE                           9                            51
  MALE                            17                            81
D14V4, multiclass
D14V5, multiclass
    clus
vv   AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  T1                           2                             4
  T2                          11                            41
  T3                           7                            54
  T4                           3                            15
D14V6, multiclass
    clus
vv   AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  N0                          11                            33
  N1                           8                            49
  N2                           1                            23
  N3                           3                            12
D14V7, multiclass
    clus
vv   AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  M0                          22                           112
  M1                           2                            14
  MX                           2                             6
D14V8, multiclass
     clus
vv    AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  I                             9                            15
  II                            4                            33
  III                           5                            38
  IV                            3                            23
D14V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(9P24.1) MUTATED     24    2
  AMP PEAK 14(9P24.1) WILD-TYPE  129    3
     clus
vv    AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  NO                            2                             3
  YES                          24                           129
D14V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(9P24.1) MUTATED     24    2
  AMP PEAK 14(9P24.1) WILD-TYPE  124    8
     clus
vv    AMP PEAK 14(9P24.1) MUTATED AMP PEAK 14(9P24.1) WILD-TYPE
  NO                            2                             8
  YES                          24                           124

Clustering(15) Variable = Amp Peak 15(9p13.3) mutation analysis
D15V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 15(9P13.3) WILD-TYPE"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 15(9P13.3) MUTATED"   "AMP PEAK 15(9P13.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "AMP PEAK 15(9P13.3) MUTATED" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 15(9P13.3) WILD-TYPE" "AMP PEAK 15(9P13.3) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 15(9P13.3) WILD-TYPE" 
[1] "hr=" "1.4"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(9P13.3) MUTATED     14   19
  AMP PEAK 15(9P13.3) WILD-TYPE   46   79
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  FEMALE                          14                            46
  MALE                            19                            79
D15V4, multiclass
D15V5, multiclass
    clus
vv   AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  T1                           2                             4
  T2                          11                            41
  T3                          12                            49
  T4                           3                            15
D15V6, multiclass
    clus
vv   AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  N0                          10                            34
  N1                          13                            44
  N2                           5                            19
  N3                           2                            13
D15V7, multiclass
    clus
vv   AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  M0                          30                           104
  M1                           2                            14
  MX                           1                             7
D15V8, multiclass
     clus
vv    AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  I                             7                            17
  II                            8                            29
  III                           7                            36
  IV                            4                            22
D15V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(9P13.3) MUTATED     29    4
  AMP PEAK 15(9P13.3) WILD-TYPE  124    1
     clus
vv    AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  NO                            4                             1
  YES                          29                           124
D15V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(9P13.3) MUTATED     27    6
  AMP PEAK 15(9P13.3) WILD-TYPE  121    4
     clus
vv    AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  NO                            6                             4
  YES                          27                           121

Clustering(16) Variable = Amp Peak 16(9q34.3) mutation analysis
D16V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK 16(9Q34.3) WILD-TYPE" 
[1] "hr=" "3.5"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(9Q34.3) MUTATED     15   28
  AMP PEAK 16(9Q34.3) WILD-TYPE   45   70
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  FEMALE                          15                            45
  MALE                            28                            70
D16V4, multiclass
D16V5, multiclass
    clus
vv   AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  T1                           2                             4
  T2                          12                            40
  T3                          17                            44
  T4                           4                            14
D16V6, multiclass
    clus
vv   AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  N0                          12                            32
  N1                          17                            40
  N2                           3                            21
  N3                           5                            10
D16V7, multiclass
    clus
vv   AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  M0                          39                            95
  M1                           3                            13
  MX                           1                             7
D16V8, multiclass
     clus
vv    AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  I                             7                            17
  II                           13                            24
  III                           7                            36
  IV                            5                            21
D16V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(9Q34.3) MUTATED     40    3
  AMP PEAK 16(9Q34.3) WILD-TYPE  113    2
     clus
vv    AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  NO                            3                             2
  YES                          40                           113
D16V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(9Q34.3) MUTATED     38    5
  AMP PEAK 16(9Q34.3) WILD-TYPE  110    5
     clus
vv    AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  NO                            5                             5
  YES                          38                           110

Clustering(17) Variable = Amp Peak 17(10q26.13) mutation analysis
D17V1, survival
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-FP-7829                      TCGA-FP-7998 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IP-7968 
"AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-FP-7829                      TCGA-FP-7998 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IP-7968 
"AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-FP-7829                      TCGA-FP-7998 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IP-7968 
"AMP PEAK 17(10Q26.13) WILD-TYPE" 
[1] "hr=" "2.7"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(10Q26.13) MUTATED     16   19
  AMP PEAK 17(10Q26.13) WILD-TYPE   44   79
        clus
vv       AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  FEMALE                            16                              44
  MALE                              19                              79
D17V4, multiclass
D17V5, multiclass
    clus
vv   AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  T1                             1                               5
  T2                            12                              40
  T3                            13                              48
  T4                             4                              14
D17V6, multiclass
    clus
vv   AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  N0                            11                              33
  N1                            12                              45
  N2                             4                              20
  N3                             4                              11
D17V7, multiclass
    clus
vv   AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  M0                            31                             103
  M1                             2                              14
  MX                             2                               6
D17V8, multiclass
     clus
vv    AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  I                               6                              18
  II                              8                              29
  III                             8                              35
  IV                              8                              18
D17V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(10Q26.13) MUTATED     33    2
  AMP PEAK 17(10Q26.13) WILD-TYPE  120    3
     clus
vv    AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  NO                              2                               3
  YES                            33                             120
D17V10, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(10Q26.13) MUTATED     32    3
  AMP PEAK 17(10Q26.13) WILD-TYPE  116    7
     clus
vv    AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  NO                              3                               7
  YES                            32                             116

Clustering(18) Variable = Amp Peak 18(11p13) mutation analysis
D18V1, survival
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 18(11P13) MUTATED"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-IP-7968 
"AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 18(11P13) MUTATED"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-IP-7968 
"AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 18(11P13) MUTATED"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-IP-7968 
"AMP PEAK 18(11P13) WILD-TYPE" 
[1] "hr=" "1"  
D18V2, continuous
D18V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(11P13) MUTATED     10   19
  AMP PEAK 18(11P13) WILD-TYPE   50   79
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  FEMALE                         10                           50
  MALE                           19                           79
D18V4, multiclass
D18V5, multiclass
    clus
vv   AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  T1                          0                            6
  T2                          6                           46
  T3                         12                           49
  T4                          5                           13
D18V6, multiclass
    clus
vv   AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  N0                          2                           42
  N1                         13                           44
  N2                          5                           19
  N3                          3                           12
D18V7, multiclass
    clus
vv   AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  M0                         25                          109
  M1                          3                           13
  MX                          1                            7
D18V8, multiclass
     clus
vv    AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  I                            2                           22
  II                           4                           33
  III                          8                           35
  IV                           7                           19
D18V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(11P13) MUTATED     28    1
  AMP PEAK 18(11P13) WILD-TYPE  125    4
     clus
vv    AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  NO                           1                            4
  YES                         28                          125
D18V10, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(11P13) MUTATED     28    1
  AMP PEAK 18(11P13) WILD-TYPE  120    9
     clus
vv    AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  NO                           1                            9
  YES                         28                          120

Clustering(19) Variable = Amp Peak 19(11q13.3) mutation analysis
D19V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 19(11Q13.3) MUTATED"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IP-7968 
"AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 19(11Q13.3) MUTATED"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IP-7968 
"AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 19(11Q13.3) MUTATED"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IP-7968 
"AMP PEAK 19(11Q13.3) WILD-TYPE" 
[1] "hr=" "4.1"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(11Q13.3) MUTATED     10   24
  AMP PEAK 19(11Q13.3) WILD-TYPE   50   74
        clus
vv       AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  FEMALE                           10                             50
  MALE                             24                             74
D19V4, multiclass
D19V5, multiclass
    clus
vv   AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  T1                            1                              5
  T2                            6                             46
  T3                           12                             49
  T4                            5                             13
D19V6, multiclass
    clus
vv   AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  N0                            5                             39
  N1                           13                             44
  N2                            5                             19
  N3                            3                             12
D19V7, multiclass
    clus
vv   AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  M0                           31                            103
  M1                            2                             14
  MX                            1                              7
D19V8, multiclass
     clus
vv    AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  I                              2                             22
  II                             7                             30
  III                            7                             36
  IV                             7                             19
D19V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(11Q13.3) MUTATED     33    1
  AMP PEAK 19(11Q13.3) WILD-TYPE  120    4
     clus
vv    AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  NO                             1                              4
  YES                           33                            120
D19V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(11Q13.3) MUTATED     33    1
  AMP PEAK 19(11Q13.3) WILD-TYPE  115    9
     clus
vv    AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  NO                             1                              9
  YES                           33                            115

Clustering(20) Variable = Amp Peak 20(12p12.1) mutation analysis
D20V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK 20(12P12.1) MUTATED" 
[1] "hr=" "1.3"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(12P12.1) MUTATED     14   27
  AMP PEAK 20(12P12.1) WILD-TYPE   46   71
        clus
vv       AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  FEMALE                           14                             46
  MALE                             27                             71
D20V4, multiclass
D20V5, multiclass
    clus
vv   AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  T1                            0                              6
  T2                            8                             44
  T3                           21                             40
  T4                            7                             11
D20V6, multiclass
    clus
vv   AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  N0                            7                             37
  N1                           14                             43
  N2                           12                             12
  N3                            6                              9
D20V7, multiclass
    clus
vv   AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  M0                           32                            102
  M1                            6                             10
  MX                            3                              5
D20V8, multiclass
     clus
vv    AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  I                              1                             23
  II                             9                             28
  III                           18                             25
  IV                             8                             18
D20V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(12P12.1) MUTATED     41    0
  AMP PEAK 20(12P12.1) WILD-TYPE  112    5
     clus
vv    AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  NO                             0                              5
  YES                           41                            112
D20V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(12P12.1) MUTATED     39    2
  AMP PEAK 20(12P12.1) WILD-TYPE  109    8
     clus
vv    AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  NO                             2                              8
  YES                           39                            109

Clustering(21) Variable = Amp Peak 21(12q15) mutation analysis
D21V1, survival
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-IP-7968 
"AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-IP-7968 
"AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-IP-7968 
"AMP PEAK 21(12Q15) WILD-TYPE" 
[1] "hr=" "1.6"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 21(12Q15) MUTATED     14   25
  AMP PEAK 21(12Q15) WILD-TYPE   46   73
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  FEMALE                         14                           46
  MALE                           25                           73
D21V4, multiclass
D21V5, multiclass
    clus
vv   AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  T1                          0                            6
  T2                         12                           40
  T3                         15                           46
  T4                          7                           11
D21V6, multiclass
    clus
vv   AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  N0                          8                           36
  N1                         13                           44
  N2                          8                           16
  N3                          6                            9
D21V7, multiclass
    clus
vv   AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  M0                         31                          103
  M1                          6                           10
  MX                          2                            6
D21V8, multiclass
     clus
vv    AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  I                            3                           21
  II                          11                           26
  III                         10                           33
  IV                           9                           17
D21V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 21(12Q15) MUTATED     37    2
  AMP PEAK 21(12Q15) WILD-TYPE  116    3
     clus
vv    AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  NO                           2                            3
  YES                         37                          116
D21V10, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 21(12Q15) MUTATED     35    4
  AMP PEAK 21(12Q15) WILD-TYPE  113    6
     clus
vv    AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  NO                           4                            6
  YES                         35                          113

Clustering(22) Variable = Amp Peak 22(13q12.3) mutation analysis
D22V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-IP-7968 
"AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-IP-7968 
"AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-IP-7968 
"AMP PEAK 22(13Q12.3) WILD-TYPE" 
[1] "hr=" "2.2"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(13Q12.3) MUTATED     23   42
  AMP PEAK 22(13Q12.3) WILD-TYPE   37   56
        clus
vv       AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  FEMALE                           23                             37
  MALE                             42                             56
D22V4, multiclass
D22V5, multiclass
    clus
vv   AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  T1                            1                              5
  T2                           23                             29
  T3                           21                             40
  T4                            9                              9
D22V6, multiclass
    clus
vv   AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  N0                           13                             31
  N1                           20                             37
  N2                           10                             14
  N3                           11                              4
D22V7, multiclass
    clus
vv   AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  M0                           56                             78
  M1                            7                              9
  MX                            2                              6
D22V8, multiclass
     clus
vv    AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  I                              5                             19
  II                            15                             22
  III                           18                             25
  IV                            14                             12
D22V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(13Q12.3) MUTATED     63    2
  AMP PEAK 22(13Q12.3) WILD-TYPE   90    3
     clus
vv    AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  NO                             2                              3
  YES                           63                             90
D22V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(13Q12.3) MUTATED     60    5
  AMP PEAK 22(13Q12.3) WILD-TYPE   88    5
     clus
vv    AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  NO                             5                              5
  YES                           60                             88

Clustering(23) Variable = Amp Peak 23(13q22.1) mutation analysis
D23V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IP-7968 
  "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IP-7968 
  "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IP-7968 
  "AMP PEAK 23(13Q22.1) MUTATED" 
[1] "hr=" "1.2"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(13Q22.1) MUTATED     24   50
  AMP PEAK 23(13Q22.1) WILD-TYPE   36   48
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  FEMALE                           24                             36
  MALE                             50                             48
D23V4, multiclass
D23V5, multiclass
    clus
vv   AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  T1                            2                              4
  T2                           23                             29
  T3                           24                             37
  T4                           10                              8
D23V6, multiclass
    clus
vv   AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  N0                           17                             27
  N1                           26                             31
  N2                           11                             13
  N3                            8                              7
D23V7, multiclass
    clus
vv   AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  M0                           66                             68
  M1                            6                             10
  MX                            2                              6
D23V8, multiclass
     clus
vv    AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  I                              7                             17
  II                            20                             17
  III                           14                             29
  IV                            15                             11
D23V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(13Q22.1) MUTATED     72    2
  AMP PEAK 23(13Q22.1) WILD-TYPE   81    3
     clus
vv    AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  NO                             2                              3
  YES                           72                             81
D23V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(13Q22.1) MUTATED     68    6
  AMP PEAK 23(13Q22.1) WILD-TYPE   80    4
     clus
vv    AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  NO                             6                              4
  YES                           68                             80

Clustering(24) Variable = Amp Peak 24(15q26.1) mutation analysis
D24V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK 24(15Q26.1) MUTATED" 
[1] "hr=" "1.2"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(15Q26.1) MUTATED     15   30
  AMP PEAK 24(15Q26.1) WILD-TYPE   45   68
        clus
vv       AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  FEMALE                           15                             45
  MALE                             30                             68
D24V4, multiclass
D24V5, multiclass
    clus
vv   AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  T1                            0                              6
  T2                           16                             36
  T3                           18                             43
  T4                            5                             13
D24V6, multiclass
    clus
vv   AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  N0                           10                             34
  N1                           14                             43
  N2                            8                             16
  N3                            7                              8
D24V7, multiclass
    clus
vv   AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  M0                           37                             97
  M1                            6                             10
  MX                            2                              6
D24V8, multiclass
     clus
vv    AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  I                              4                             20
  II                            11                             26
  III                           13                             30
  IV                             9                             17
D24V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(15Q26.1) MUTATED     43    2
  AMP PEAK 24(15Q26.1) WILD-TYPE  110    3
     clus
vv    AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  NO                             2                              3
  YES                           43                            110
D24V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(15Q26.1) MUTATED     41    4
  AMP PEAK 24(15Q26.1) WILD-TYPE  107    6
     clus
vv    AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  NO                             4                              6
  YES                           41                            107

Clustering(25) Variable = Amp Peak 25(17q12) mutation analysis
D25V1, survival
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-IP-7968 
  "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-IP-7968 
  "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-IP-7968 
  "AMP PEAK 25(17Q12) MUTATED" 
[1] "hr=" "1.5"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 25(17Q12) MUTATED     16   30
  AMP PEAK 25(17Q12) WILD-TYPE   44   68
        clus
vv       AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  FEMALE                         16                           44
  MALE                           30                           68
D25V4, multiclass
D25V5, multiclass
    clus
vv   AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  T1                          0                            6
  T2                         19                           33
  T3                         16                           45
  T4                          6                           12
D25V6, multiclass
    clus
vv   AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  N0                         13                           31
  N1                         13                           44
  N2                          9                           15
  N3                          5                           10
D25V7, multiclass
    clus
vv   AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  M0                         33                          101
  M1                          9                            7
  MX                          4                            4
D25V8, multiclass
     clus
vv    AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  I                            7                           17
  II                          11                           26
  III                         10                           33
  IV                          11                           15
D25V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 25(17Q12) MUTATED     44    2
  AMP PEAK 25(17Q12) WILD-TYPE  109    3
     clus
vv    AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  NO                           2                            3
  YES                         44                          109
D25V10, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 25(17Q12) MUTATED     41    5
  AMP PEAK 25(17Q12) WILD-TYPE  107    5
     clus
vv    AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  NO                           5                            5
  YES                         41                          107

Clustering(26) Variable = Amp Peak 26(18q11.2) mutation analysis
D26V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
"AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
"AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
"AMP PEAK 26(18Q11.2) WILD-TYPE" 
[1] "hr=" "2.2"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(18Q11.2) MUTATED     18   34
  AMP PEAK 26(18Q11.2) WILD-TYPE   42   64
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  FEMALE                           18                             42
  MALE                             34                             64
D26V4, multiclass
D26V5, multiclass
    clus
vv   AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  T1                            0                              6
  T2                           12                             40
  T3                           21                             40
  T4                            6                             12
D26V6, multiclass
    clus
vv   AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  N0                            8                             36
  N1                           18                             39
  N2                            8                             16
  N3                            8                              7
D26V7, multiclass
    clus
vv   AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  M0                           43                             91
  M1                            6                             10
  MX                            3                              5
D26V8, multiclass
     clus
vv    AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  I                              3                             21
  II                            10                             27
  III                           14                             29
  IV                            10                             16
D26V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(18Q11.2) MUTATED     49    3
  AMP PEAK 26(18Q11.2) WILD-TYPE  104    2
     clus
vv    AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  NO                             3                              2
  YES                           49                            104
D26V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(18Q11.2) MUTATED     45    7
  AMP PEAK 26(18Q11.2) WILD-TYPE  103    3
     clus
vv    AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  NO                             7                              3
  YES                           45                            103

Clustering(27) Variable = Amp Peak 27(19q12) mutation analysis
D27V1, survival
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-IP-7968 
"AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-IP-7968 
"AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-IP-7968 
"AMP PEAK 27(19Q12) WILD-TYPE" 
[1] "hr=" "2.5"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED     18   30
  AMP PEAK 27(19Q12) WILD-TYPE   42   68
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  FEMALE                         18                           42
  MALE                           30                           68
D27V4, multiclass
D27V5, multiclass
    clus
vv   AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  T1                          0                            6
  T2                         16                           36
  T3                         21                           40
  T4                          5                           13
D27V6, multiclass
    clus
vv   AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  N0                         10                           34
  N1                         15                           42
  N2                         10                           14
  N3                          6                            9
D27V7, multiclass
    clus
vv   AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  M0                         39                           95
  M1                          6                           10
  MX                          3                            5
D27V8, multiclass
     clus
vv    AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  I                            5                           19
  II                          13                           24
  III                         11                           32
  IV                          10                           16
D27V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED     44    4
  AMP PEAK 27(19Q12) WILD-TYPE  109    1
     clus
vv    AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  NO                           4                            1
  YES                         44                          109
D27V10, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED     40    8
  AMP PEAK 27(19Q12) WILD-TYPE  108    2
     clus
vv    AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  NO                           8                            2
  YES                         40                          108

Clustering(28) Variable = Amp Peak 28(20q13.2) mutation analysis
D28V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-IP-7968 
  "AMP PEAK 28(20Q13.2) MUTATED" 
[1] "hr=" "2.5"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(20Q13.2) MUTATED     35   74
  AMP PEAK 28(20Q13.2) WILD-TYPE   25   24
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  FEMALE                           35                             25
  MALE                             74                             24
D28V4, multiclass
D28V5, multiclass
    clus
vv   AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  T1                            3                              3
  T2                           36                             16
  T3                           44                             17
  T4                           11                              7
D28V6, multiclass
    clus
vv   AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  N0                           25                             19
  N1                           42                             15
  N2                           15                              9
  N3                           12                              3
D28V7, multiclass
    clus
vv   AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  M0                           93                             41
  M1                           10                              6
  MX                            6                              2
D28V8, multiclass
     clus
vv    AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  I                             13                             11
  II                            25                             12
  III                           34                              9
  IV                            17                              9
D28V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(20Q13.2) MUTATED    106    3
  AMP PEAK 28(20Q13.2) WILD-TYPE   47    2
     clus
vv    AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  NO                             3                              2
  YES                          106                             47
D28V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(20Q13.2) MUTATED    101    8
  AMP PEAK 28(20Q13.2) WILD-TYPE   47    2
     clus
vv    AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  NO                             8                              2
  YES                          101                             47

Clustering(29) Variable = Amp Peak 29(Xq27.3) mutation analysis
D29V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 29(XQ27.3) MUTATED"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 29(XQ27.3) MUTATED"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 29(XQ27.3) MUTATED"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 29(XQ27.3) MUTATED"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 29(XQ27.3) MUTATED"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 29(XQ27.3) MUTATED"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 29(XQ27.3) MUTATED"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 29(XQ27.3) MUTATED"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 29(XQ27.3) MUTATED"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 29(XQ27.3) MUTATED"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 29(XQ27.3) MUTATED" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 29(XQ27.3) MUTATED"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 29(XQ27.3) MUTATED"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 29(XQ27.3) WILD-TYPE"   "AMP PEAK 29(XQ27.3) MUTATED" 
                   TCGA-IP-7968 
"AMP PEAK 29(XQ27.3) WILD-TYPE" 
[1] "hr=" "1.5"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 29(XQ27.3) MUTATED     13   22
  AMP PEAK 29(XQ27.3) WILD-TYPE   47   76
        clus
vv       AMP PEAK 29(XQ27.3) MUTATED AMP PEAK 29(XQ27.3) WILD-TYPE
  FEMALE                          13                            47
  MALE                            22                            76
D29V4, multiclass
D29V5, multiclass
    clus
vv   AMP PEAK 29(XQ27.3) MUTATED AMP PEAK 29(XQ27.3) WILD-TYPE
  T1                           1                             5
  T2                          11                            41
  T3                          11                            50
  T4                           7                            11
D29V6, multiclass
    clus
vv   AMP PEAK 29(XQ27.3) MUTATED AMP PEAK 29(XQ27.3) WILD-TYPE
  N0                          10                            34
  N1                          12                            45
  N2                           7                            17
  N3                           4                            11
D29V7, multiclass
    clus
vv   AMP PEAK 29(XQ27.3) MUTATED AMP PEAK 29(XQ27.3) WILD-TYPE
  M0                          31                           103
  M1                           3                            13
  MX                           1                             7
D29V8, multiclass
     clus
vv    AMP PEAK 29(XQ27.3) MUTATED AMP PEAK 29(XQ27.3) WILD-TYPE
  I                             7                            17
  II                            5                            32
  III                           9                            34
  IV                            8                            18
D29V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 29(XQ27.3) MUTATED     34    1
  AMP PEAK 29(XQ27.3) WILD-TYPE  119    4
     clus
vv    AMP PEAK 29(XQ27.3) MUTATED AMP PEAK 29(XQ27.3) WILD-TYPE
  NO                            1                             4
  YES                          34                           119
D29V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 29(XQ27.3) MUTATED     31    4
  AMP PEAK 29(XQ27.3) WILD-TYPE  117    6
     clus
vv    AMP PEAK 29(XQ27.3) MUTATED AMP PEAK 29(XQ27.3) WILD-TYPE
  NO                            4                             6
  YES                          31                           117

Clustering(30) Variable = Del Peak  1(1p36.11) mutation analysis
D30V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" 
[1] "hr=" "1.1"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED     15   30
  DEL PEAK  1(1P36.11) WILD-TYPE   45   68
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  FEMALE                           15                             45
  MALE                             30                             68
D30V4, multiclass
D30V5, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  T1                            1                              5
  T2                           18                             34
  T3                           13                             48
  T4                            5                             13
D30V6, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  N0                           11                             33
  N1                           15                             42
  N2                            6                             18
  N3                            5                             10
D30V7, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  M0                           39                             95
  M1                            5                             11
  MX                            1                              7
D30V8, multiclass
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  I                              7                             17
  II                             9                             28
  III                           10                             33
  IV                             8                             18
D30V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED     43    2
  DEL PEAK  1(1P36.11) WILD-TYPE  110    3
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  NO                             2                              3
  YES                           43                            110
D30V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED     41    4
  DEL PEAK  1(1P36.11) WILD-TYPE  107    6
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  NO                             4                              6
  YES                           41                            107

Clustering(31) Variable = Del Peak  2(1q44) mutation analysis
D31V1, survival
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
  "DEL PEAK  2(1Q44) MUTATED" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK  2(1Q44) MUTATED" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK  2(1Q44) MUTATED" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7998 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-IP-7968 
  "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
  "DEL PEAK  2(1Q44) MUTATED" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK  2(1Q44) MUTATED" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK  2(1Q44) MUTATED" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7998 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-IP-7968 
  "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
  "DEL PEAK  2(1Q44) MUTATED" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK  2(1Q44) MUTATED" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK  2(1Q44) MUTATED" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK  2(1Q44) WILD-TYPE"   "DEL PEAK  2(1Q44) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7998 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"DEL PEAK  2(1Q44) WILD-TYPE" "DEL PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-IP-7968 
  "DEL PEAK  2(1Q44) MUTATED" 
[1] "hr=" "3.8"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1Q44) MUTATED      4    8
  DEL PEAK  2(1Q44) WILD-TYPE   56   90
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  FEMALE                         4                          56
  MALE                           8                          90
D31V4, multiclass
D31V5, multiclass
    clus
vv   DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  T1                         0                           6
  T2                         4                          48
  T3                         7                          54
  T4                         0                          18
D31V6, multiclass
    clus
vv   DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  N0                         2                          42
  N1                         4                          53
  N2                         3                          21
  N3                         2                          13
D31V7, multiclass
    clus
vv   DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  M0                         9                         125
  M1                         2                          14
  MX                         1                           7
D31V8, multiclass
     clus
vv    DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  I                           2                          22
  II                          2                          35
  III                         4                          39
  IV                          3                          23
D31V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1Q44) MUTATED     12    0
  DEL PEAK  2(1Q44) WILD-TYPE  141    5
     clus
vv    DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  NO                          0                           5
  YES                        12                         141
D31V10, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1Q44) MUTATED     12    0
  DEL PEAK  2(1Q44) WILD-TYPE  136   10
     clus
vv    DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  NO                          0                          10
  YES                        12                         136

Clustering(32) Variable = Del Peak  3(2q32.1) mutation analysis
D32V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  3(2Q32.1) WILD-TYPE"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  3(2Q32.1) MUTATED" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  3(2Q32.1) MUTATED" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  3(2Q32.1) WILD-TYPE"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  3(2Q32.1) WILD-TYPE"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  3(2Q32.1) WILD-TYPE"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  3(2Q32.1) MUTATED" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  3(2Q32.1) MUTATED"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  3(2Q32.1) MUTATED"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  3(2Q32.1) WILD-TYPE"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  3(2Q32.1) MUTATED" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  3(2Q32.1) MUTATED" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  3(2Q32.1) WILD-TYPE"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  3(2Q32.1) WILD-TYPE"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  3(2Q32.1) WILD-TYPE"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  3(2Q32.1) MUTATED" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  3(2Q32.1) MUTATED"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  3(2Q32.1) MUTATED"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  3(2Q32.1) WILD-TYPE"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  3(2Q32.1) MUTATED" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  3(2Q32.1) MUTATED" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  3(2Q32.1) WILD-TYPE"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  3(2Q32.1) WILD-TYPE"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  3(2Q32.1) WILD-TYPE"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  3(2Q32.1) MUTATED" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  3(2Q32.1) MUTATED"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  3(2Q32.1) MUTATED"   "DEL PEAK  3(2Q32.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  3(2Q32.1) WILD-TYPE" "DEL PEAK  3(2Q32.1) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  3(2Q32.1) WILD-TYPE" 
[1] "hr=" "1.7"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q32.1) MUTATED      5   14
  DEL PEAK  3(2Q32.1) WILD-TYPE   55   84
        clus
vv       DEL PEAK  3(2Q32.1) MUTATED DEL PEAK  3(2Q32.1) WILD-TYPE
  FEMALE                           5                            55
  MALE                            14                            84
D32V4, multiclass
D32V5, multiclass
    clus
vv   DEL PEAK  3(2Q32.1) MUTATED DEL PEAK  3(2Q32.1) WILD-TYPE
  T1                           0                             6
  T2                           4                            48
  T3                           9                            52
  T4                           2                            16
D32V6, multiclass
    clus
vv   DEL PEAK  3(2Q32.1) MUTATED DEL PEAK  3(2Q32.1) WILD-TYPE
  N0                           3                            41
  N1                           5                            52
  N2                           4                            20
  N3                           4                            11
D32V7, multiclass
    clus
vv   DEL PEAK  3(2Q32.1) MUTATED DEL PEAK  3(2Q32.1) WILD-TYPE
  M0                          16                           118
  M1                           2                            14
  MX                           1                             7
D32V8, multiclass
     clus
vv    DEL PEAK  3(2Q32.1) MUTATED DEL PEAK  3(2Q32.1) WILD-TYPE
  I                             2                            22
  II                            5                            32
  III                           3                            40
  IV                            4                            22
D32V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q32.1) MUTATED     18    1
  DEL PEAK  3(2Q32.1) WILD-TYPE  135    4
     clus
vv    DEL PEAK  3(2Q32.1) MUTATED DEL PEAK  3(2Q32.1) WILD-TYPE
  NO                            1                             4
  YES                          18                           135
D32V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q32.1) MUTATED     17    2
  DEL PEAK  3(2Q32.1) WILD-TYPE  131    8
     clus
vv    DEL PEAK  3(2Q32.1) MUTATED DEL PEAK  3(2Q32.1) WILD-TYPE
  NO                            2                             8
  YES                          17                           131

Clustering(33) Variable = Del Peak  4(2q33.3) mutation analysis
D33V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q33.3) WILD-TYPE"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q33.3) WILD-TYPE"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  4(2Q33.3) WILD-TYPE"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  4(2Q33.3) MUTATED"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  4(2Q33.3) WILD-TYPE"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q33.3) WILD-TYPE"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q33.3) WILD-TYPE"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  4(2Q33.3) WILD-TYPE"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  4(2Q33.3) MUTATED"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  4(2Q33.3) WILD-TYPE"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q33.3) WILD-TYPE"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q33.3) WILD-TYPE"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  4(2Q33.3) WILD-TYPE"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  4(2Q33.3) MUTATED" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  4(2Q33.3) MUTATED"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  4(2Q33.3) WILD-TYPE"   "DEL PEAK  4(2Q33.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  4(2Q33.3) WILD-TYPE" "DEL PEAK  4(2Q33.3) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  4(2Q33.3) WILD-TYPE" 
[1] "hr=" "2.6"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q33.3) MUTATED      6    9
  DEL PEAK  4(2Q33.3) WILD-TYPE   54   89
        clus
vv       DEL PEAK  4(2Q33.3) MUTATED DEL PEAK  4(2Q33.3) WILD-TYPE
  FEMALE                           6                            54
  MALE                             9                            89
D33V4, multiclass
D33V5, multiclass
    clus
vv   DEL PEAK  4(2Q33.3) MUTATED DEL PEAK  4(2Q33.3) WILD-TYPE
  T1                           0                             6
  T2                           4                            48
  T3                           9                            52
  T4                           1                            17
D33V6, multiclass
    clus
vv   DEL PEAK  4(2Q33.3) MUTATED DEL PEAK  4(2Q33.3) WILD-TYPE
  N0                           4                            40
  N1                           3                            54
  N2                           4                            20
  N3                           4                            11
D33V7, multiclass
    clus
vv   DEL PEAK  4(2Q33.3) MUTATED DEL PEAK  4(2Q33.3) WILD-TYPE
  M0                          12                           122
  M1                           2                            14
  MX                           1                             7
D33V8, multiclass
     clus
vv    DEL PEAK  4(2Q33.3) MUTATED DEL PEAK  4(2Q33.3) WILD-TYPE
  I                             3                            21
  II                            4                            33
  III                           4                            39
  IV                            3                            23
D33V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q33.3) MUTATED     13    2
  DEL PEAK  4(2Q33.3) WILD-TYPE  140    3
     clus
vv    DEL PEAK  4(2Q33.3) MUTATED DEL PEAK  4(2Q33.3) WILD-TYPE
  NO                            2                             3
  YES                          13                           140
D33V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q33.3) MUTATED     12    3
  DEL PEAK  4(2Q33.3) WILD-TYPE  136    7
     clus
vv    DEL PEAK  4(2Q33.3) MUTATED DEL PEAK  4(2Q33.3) WILD-TYPE
  NO                            3                             7
  YES                          12                           136

Clustering(34) Variable = Del Peak  5(2q37.2) mutation analysis
D34V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  5(2Q37.2) WILD-TYPE" 
[1] "hr=" "2.7"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q37.2) MUTATED      9   12
  DEL PEAK  5(2Q37.2) WILD-TYPE   51   86
        clus
vv       DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  FEMALE                           9                            51
  MALE                            12                            86
D34V4, multiclass
D34V5, multiclass
    clus
vv   DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  T1                           1                             5
  T2                           9                            43
  T3                           7                            54
  T4                           3                            15
D34V6, multiclass
    clus
vv   DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  N0                           9                            35
  N1                           5                            52
  N2                           5                            19
  N3                           1                            14
D34V7, multiclass
    clus
vv   DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  M0                          19                           115
  M1                           1                            15
  MX                           1                             7
D34V8, multiclass
     clus
vv    DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  I                             5                            19
  II                            6                            31
  III                           7                            36
  IV                            2                            24
D34V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q37.2) MUTATED     20    1
  DEL PEAK  5(2Q37.2) WILD-TYPE  133    4
     clus
vv    DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  NO                            1                             4
  YES                          20                           133
D34V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q37.2) MUTATED     20    1
  DEL PEAK  5(2Q37.2) WILD-TYPE  128    9
     clus
vv    DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  NO                            1                             9
  YES                          20                           128

Clustering(35) Variable = Del Peak  6(3p26.1) mutation analysis
D35V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  6(3P26.1) WILD-TYPE" 
[1] "hr=" "1.4"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3P26.1) MUTATED     20   21
  DEL PEAK  6(3P26.1) WILD-TYPE   40   77
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  FEMALE                          20                            40
  MALE                            21                            77
D35V4, multiclass
D35V5, multiclass
    clus
vv   DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  T1                           0                             6
  T2                          13                            39
  T3                          18                            43
  T4                           5                            13
D35V6, multiclass
    clus
vv   DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  N0                           9                            35
  N1                          15                            42
  N2                           8                            16
  N3                           4                            11
D35V7, multiclass
    clus
vv   DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  M0                          34                           100
  M1                           5                            11
  MX                           2                             6
D35V8, multiclass
     clus
vv    DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  I                             5                            19
  II                           10                            27
  III                          13                            30
  IV                            7                            19
D35V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3P26.1) MUTATED     40    1
  DEL PEAK  6(3P26.1) WILD-TYPE  113    4
     clus
vv    DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  NO                            1                             4
  YES                          40                           113
D35V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3P26.1) MUTATED     38    3
  DEL PEAK  6(3P26.1) WILD-TYPE  110    7
     clus
vv    DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  NO                            3                             7
  YES                          38                           110

Clustering(36) Variable = Del Peak  7(3p14.2) mutation analysis
D36V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  7(3P14.2) WILD-TYPE" 
[1] "hr=" "1.2"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P14.2) MUTATED     27   29
  DEL PEAK  7(3P14.2) WILD-TYPE   33   69
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  FEMALE                          27                            33
  MALE                            29                            69
D36V4, multiclass
D36V5, multiclass
    clus
vv   DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  T1                           0                             6
  T2                          20                            32
  T3                          23                            38
  T4                           7                            11
D36V6, multiclass
    clus
vv   DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  N0                          13                            31
  N1                          24                            33
  N2                           9                            15
  N3                           6                             9
D36V7, multiclass
    clus
vv   DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  M0                          48                            86
  M1                           7                             9
  MX                           1                             7
D36V8, multiclass
     clus
vv    DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  I                             6                            18
  II                           13                            24
  III                          22                            21
  IV                            9                            17
D36V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P14.2) MUTATED     54    2
  DEL PEAK  7(3P14.2) WILD-TYPE   99    3
     clus
vv    DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  NO                            2                             3
  YES                          54                            99
D36V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P14.2) MUTATED     51    5
  DEL PEAK  7(3P14.2) WILD-TYPE   97    5
     clus
vv    DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  NO                            5                             5
  YES                          51                            97

Clustering(37) Variable = Del Peak  8(3q26.31) mutation analysis
D37V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK  8(3Q26.31) WILD-TYPE" 
[1] "hr=" "1.5"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  8(3Q26.31) MUTATED      5   10
  DEL PEAK  8(3Q26.31) WILD-TYPE   55   88
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  FEMALE                            5                             55
  MALE                             10                             88
D37V4, multiclass
D37V5, multiclass
    clus
vv   DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  T1                            0                              6
  T2                            3                             49
  T3                            7                             54
  T4                            1                             17
D37V6, multiclass
    clus
vv   DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  N0                            4                             40
  N1                            4                             53
  N2                            4                             20
  N3                            0                             15
D37V7, multiclass
    clus
vv   DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  M0                           13                            121
  M1                            0                             16
  MX                            2                              6
D37V8, multiclass
     clus
vv    DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  I                              2                             22
  II                             4                             33
  III                            3                             40
  IV                             1                             25
D37V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  8(3Q26.31) MUTATED     14    1
  DEL PEAK  8(3Q26.31) WILD-TYPE  139    4
     clus
vv    DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  NO                             1                              4
  YES                           14                            139
D37V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  8(3Q26.31) MUTATED     13    2
  DEL PEAK  8(3Q26.31) WILD-TYPE  135    8
     clus
vv    DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  NO                             2                              8
  YES                           13                            135

Clustering(38) Variable = Del Peak  9(4q22.1) mutation analysis
D38V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK  9(4Q22.1) MUTATED" 
[1] "hr=" "1.8"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q22.1) MUTATED     23   39
  DEL PEAK  9(4Q22.1) WILD-TYPE   37   59
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  FEMALE                          23                            37
  MALE                            39                            59
D38V4, multiclass
D38V5, multiclass
    clus
vv   DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  T1                           0                             6
  T2                          24                            28
  T3                          24                            37
  T4                           7                            11
D38V6, multiclass
    clus
vv   DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  N0                          15                            29
  N1                          21                            36
  N2                           9                            15
  N3                          10                             5
D38V7, multiclass
    clus
vv   DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  M0                          53                            81
  M1                           6                            10
  MX                           3                             5
D38V8, multiclass
     clus
vv    DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  I                             8                            16
  II                           16                            21
  III                          15                            28
  IV                           14                            12
D38V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q22.1) MUTATED     58    4
  DEL PEAK  9(4Q22.1) WILD-TYPE   95    1
     clus
vv    DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  NO                            4                             1
  YES                          58                            95
D38V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q22.1) MUTATED     55    7
  DEL PEAK  9(4Q22.1) WILD-TYPE   93    3
     clus
vv    DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  NO                            7                             3
  YES                          55                            93

Clustering(39) Variable = Del Peak 10(4q34.3) mutation analysis
D39V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 10(4Q34.3) MUTATED" 
[1] "hr=" "1.4"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4Q34.3) MUTATED     25   40
  DEL PEAK 10(4Q34.3) WILD-TYPE   35   58
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  FEMALE                          25                            35
  MALE                            40                            58
D39V4, multiclass
D39V5, multiclass
    clus
vv   DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  T1                           0                             6
  T2                          22                            30
  T3                          26                            35
  T4                           6                            12
D39V6, multiclass
    clus
vv   DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  N0                          18                            26
  N1                          17                            40
  N2                          13                            11
  N3                           7                             8
D39V7, multiclass
    clus
vv   DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  M0                          58                            76
  M1                           5                            11
  MX                           2                             6
D39V8, multiclass
     clus
vv    DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  I                             8                            16
  II                           21                            16
  III                          14                            29
  IV                            9                            17
D39V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4Q34.3) MUTATED     62    3
  DEL PEAK 10(4Q34.3) WILD-TYPE   91    2
     clus
vv    DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  NO                            3                             2
  YES                          62                            91
D39V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4Q34.3) MUTATED     60    5
  DEL PEAK 10(4Q34.3) WILD-TYPE   88    5
     clus
vv    DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  NO                            5                             5
  YES                          60                            88

Clustering(40) Variable = Del Peak 11(5q11.2) mutation analysis
D40V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 11(5Q11.2) MUTATED" 
[1] "hr=" "1.6"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q11.2) MUTATED     21   31
  DEL PEAK 11(5Q11.2) WILD-TYPE   39   67
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  FEMALE                          21                            39
  MALE                            31                            67
D40V4, multiclass
D40V5, multiclass
    clus
vv   DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  T1                           1                             5
  T2                          21                            31
  T3                          18                            43
  T4                           2                            16
D40V6, multiclass
    clus
vv   DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  N0                          12                            32
  N1                          18                            39
  N2                           9                            15
  N3                           5                            10
D40V7, multiclass
    clus
vv   DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  M0                          49                            85
  M1                           2                            14
  MX                           1                             7
D40V8, multiclass
     clus
vv    DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  I                             8                            16
  II                           12                            25
  III                          16                            27
  IV                            5                            21
D40V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q11.2) MUTATED     50    2
  DEL PEAK 11(5Q11.2) WILD-TYPE  103    3
     clus
vv    DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  NO                            2                             3
  YES                          50                           103
D40V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q11.2) MUTATED     47    5
  DEL PEAK 11(5Q11.2) WILD-TYPE  101    5
     clus
vv    DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  NO                            5                             5
  YES                          47                           101

Clustering(41) Variable = Del Peak 12(6p25.3) mutation analysis
D41V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK 12(6P25.3) WILD-TYPE" 
[1] "hr=" "5"  
D41V2, continuous
D41V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) MUTATED     18   22
  DEL PEAK 12(6P25.3) WILD-TYPE   42   76
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  FEMALE                          18                            42
  MALE                            22                            76
D41V4, multiclass
D41V5, multiclass
    clus
vv   DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  T1                           0                             6
  T2                          15                            37
  T3                          15                            46
  T4                           3                            15
D41V6, multiclass
    clus
vv   DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  N0                          11                            33
  N1                          11                            46
  N2                           6                            18
  N3                           4                            11
D41V7, multiclass
    clus
vv   DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  M0                          35                            99
  M1                           2                            14
  MX                           3                             5
D41V8, multiclass
     clus
vv    DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  I                             5                            19
  II                            8                            29
  III                          10                            33
  IV                            6                            20
D41V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) MUTATED     39    1
  DEL PEAK 12(6P25.3) WILD-TYPE  114    4
     clus
vv    DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  NO                            1                             4
  YES                          39                           114
D41V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) MUTATED     37    3
  DEL PEAK 12(6P25.3) WILD-TYPE  111    7
     clus
vv    DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  NO                            3                             7
  YES                          37                           111

Clustering(42) Variable = Del Peak 13(6q26) mutation analysis
D42V1, survival
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7998 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-IP-7968 
"DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7998 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-IP-7968 
"DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7998 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-IP-7968 
"DEL PEAK 13(6Q26) WILD-TYPE" 
[1] "hr=" "1.5"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) MUTATED     14   22
  DEL PEAK 13(6Q26) WILD-TYPE   46   76
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  FEMALE                        14                          46
  MALE                          22                          76
D42V4, multiclass
D42V5, multiclass
    clus
vv   DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  T1                         1                           5
  T2                        12                          40
  T3                        15                          46
  T4                         5                          13
D42V6, multiclass
    clus
vv   DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  N0                         7                          37
  N1                        15                          42
  N2                         6                          18
  N3                         6                           9
D42V7, multiclass
    clus
vv   DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  M0                        31                         103
  M1                         4                          12
  MX                         1                           7
D42V8, multiclass
     clus
vv    DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  I                           3                          21
  II                         10                          27
  III                        10                          33
  IV                          9                          17
D42V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) MUTATED     34    2
  DEL PEAK 13(6Q26) WILD-TYPE  119    3
     clus
vv    DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  NO                          2                           3
  YES                        34                         119
D42V10, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) MUTATED     31    5
  DEL PEAK 13(6Q26) WILD-TYPE  117    5
     clus
vv    DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  NO                          5                           5
  YES                        31                         117

Clustering(43) Variable = Del Peak 14(7q31.1) mutation analysis
D43V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 14(7Q31.1) MUTATED"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 14(7Q31.1) MUTATED"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 14(7Q31.1) MUTATED"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 14(7Q31.1) MUTATED"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 14(7Q31.1) MUTATED"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 14(7Q31.1) MUTATED"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 14(7Q31.1) MUTATED" 
[1] "hr="     "2.4e+08"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) MUTATED      5   16
  DEL PEAK 14(7Q31.1) WILD-TYPE   55   82
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  FEMALE                           5                            55
  MALE                            16                            82
D43V4, multiclass
D43V5, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  T1                           0                             6
  T2                           6                            46
  T3                           8                            53
  T4                           3                            15
D43V6, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  N0                           1                            43
  N1                          13                            44
  N2                           4                            20
  N3                           0                            15
D43V7, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  M0                          19                           115
  M1                           1                            15
  MX                           1                             7
D43V8, multiclass
     clus
vv    DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  I                             1                            23
  II                            6                            31
  III                           7                            36
  IV                            3                            23
D43V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) MUTATED     21    0
  DEL PEAK 14(7Q31.1) WILD-TYPE  132    5
     clus
vv    DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  NO                            0                             5
  YES                          21                           132
D43V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) MUTATED     21    0
  DEL PEAK 14(7Q31.1) WILD-TYPE  127   10
     clus
vv    DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  NO                            0                            10
  YES                          21                           127

Clustering(44) Variable = Del Peak 15(7q36.3) mutation analysis
D44V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-IP-7968 
"DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-IP-7968 
"DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-IP-7968 
"DEL PEAK 15(7Q36.3) WILD-TYPE" 
[1] "hr=" "3"  
D44V2, continuous
D44V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(7Q36.3) MUTATED      9   20
  DEL PEAK 15(7Q36.3) WILD-TYPE   51   78
        clus
vv       DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  FEMALE                           9                            51
  MALE                            20                            78
D44V4, multiclass
D44V5, multiclass
    clus
vv   DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  T1                           0                             6
  T2                           9                            43
  T3                          14                            47
  T4                           3                            15
D44V6, multiclass
    clus
vv   DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  N0                           2                            42
  N1                          15                            42
  N2                           5                            19
  N3                           4                            11
D44V7, multiclass
    clus
vv   DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  M0                          26                           108
  M1                           3                            13
  MX                           0                             8
D44V8, multiclass
     clus
vv    DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  I                             0                            24
  II                           10                            27
  III                          11                            32
  IV                            5                            21
D44V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(7Q36.3) MUTATED     28    1
  DEL PEAK 15(7Q36.3) WILD-TYPE  125    4
     clus
vv    DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  NO                            1                             4
  YES                          28                           125
D44V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(7Q36.3) MUTATED     26    3
  DEL PEAK 15(7Q36.3) WILD-TYPE  122    7
     clus
vv    DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  NO                            3                             7
  YES                          26                           122

Clustering(45) Variable = Del Peak 16(8p23.2) mutation analysis
D45V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 16(8P23.2) MUTATED" 
[1] "hr=" "1.4"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(8P23.2) MUTATED     16   30
  DEL PEAK 16(8P23.2) WILD-TYPE   44   68
        clus
vv       DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  FEMALE                          16                            44
  MALE                            30                            68
D45V4, multiclass
D45V5, multiclass
    clus
vv   DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  T1                           2                             4
  T2                          13                            39
  T3                          19                            42
  T4                           5                            13
D45V6, multiclass
    clus
vv   DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  N0                          10                            34
  N1                          14                            43
  N2                           9                            15
  N3                           7                             8
D45V7, multiclass
    clus
vv   DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  M0                          39                            95
  M1                           5                            11
  MX                           2                             6
D45V8, multiclass
     clus
vv    DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  I                             5                            19
  II                           13                            24
  III                          10                            33
  IV                           10                            16
D45V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(8P23.2) MUTATED     45    1
  DEL PEAK 16(8P23.2) WILD-TYPE  108    4
     clus
vv    DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  NO                            1                             4
  YES                          45                           108
D45V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(8P23.2) MUTATED     43    3
  DEL PEAK 16(8P23.2) WILD-TYPE  105    7
     clus
vv    DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  NO                            3                             7
  YES                          43                           105

Clustering(46) Variable = Del Peak 17(9p23) mutation analysis
D46V1, survival
                 TCGA-B7-5816                  TCGA-B7-5818 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4449                  TCGA-CG-4455 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6518                  TCGA-D7-6519 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7998 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-IP-7968 
"DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4449                  TCGA-CG-4455 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6518                  TCGA-D7-6519 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7998 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-IP-7968 
"DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4449                  TCGA-CG-4455 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6518                  TCGA-D7-6519 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7998 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-IP-7968 
"DEL PEAK 17(9P23) WILD-TYPE" 
[1] "hr=" "5.5"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(9P23) MUTATED     27   42
  DEL PEAK 17(9P23) WILD-TYPE   33   56
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  FEMALE                        27                          33
  MALE                          42                          56
D46V4, multiclass
D46V5, multiclass
    clus
vv   DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  T1                         1                           5
  T2                        23                          29
  T3                        26                          35
  T4                         8                          10
D46V6, multiclass
    clus
vv   DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  N0                        13                          31
  N1                        28                          29
  N2                        11                          13
  N3                         8                           7
D46V7, multiclass
    clus
vv   DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  M0                        63                          71
  M1                         5                          11
  MX                         1                           7
D46V8, multiclass
     clus
vv    DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  I                           3                          21
  II                         20                          17
  III                        21                          22
  IV                         12                          14
D46V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(9P23) MUTATED     66    3
  DEL PEAK 17(9P23) WILD-TYPE   87    2
     clus
vv    DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  NO                          3                           2
  YES                        66                          87
D46V10, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(9P23) MUTATED     61    8
  DEL PEAK 17(9P23) WILD-TYPE   87    2
     clus
vv    DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  NO                          8                           2
  YES                        61                          87

Clustering(47) Variable = Del Peak 18(9p21.3) mutation analysis
D47V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-IP-7968 
  "DEL PEAK 18(9P21.3) MUTATED" 
[1] "hr=" "2"  
D47V2, continuous
D47V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(9P21.3) MUTATED     24   41
  DEL PEAK 18(9P21.3) WILD-TYPE   36   57
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  FEMALE                          24                            36
  MALE                            41                            57
D47V4, multiclass
D47V5, multiclass
    clus
vv   DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  T1                           1                             5
  T2                          24                            28
  T3                          24                            37
  T4                           7                            11
D47V6, multiclass
    clus
vv   DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  N0                          17                            27
  N1                          22                            35
  N2                          13                            11
  N3                           6                             9
D47V7, multiclass
    clus
vv   DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  M0                          58                            76
  M1                           5                            11
  MX                           2                             6
D47V8, multiclass
     clus
vv    DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  I                             8                            16
  II                           18                            19
  III                          18                            25
  IV                           11                            15
D47V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(9P21.3) MUTATED     62    3
  DEL PEAK 18(9P21.3) WILD-TYPE   91    2
     clus
vv    DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  NO                            3                             2
  YES                          62                            91
D47V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(9P21.3) MUTATED     58    7
  DEL PEAK 18(9P21.3) WILD-TYPE   90    3
     clus
vv    DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  NO                            7                             3
  YES                          58                            90

Clustering(48) Variable = Del Peak 19(10q23.31) mutation analysis
D48V1, survival
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 19(10Q23.31) MUTATED"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 19(10Q23.31) MUTATED"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 19(10Q23.31) MUTATED"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 19(10Q23.31) MUTATED"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-FP-7829                      TCGA-FP-7998 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-IP-7968 
"DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 19(10Q23.31) MUTATED"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 19(10Q23.31) MUTATED"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 19(10Q23.31) MUTATED"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 19(10Q23.31) MUTATED"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-FP-7829                      TCGA-FP-7998 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-IP-7968 
"DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 19(10Q23.31) MUTATED"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 19(10Q23.31) MUTATED"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 19(10Q23.31) MUTATED"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 19(10Q23.31) MUTATED"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 19(10Q23.31) WILD-TYPE"   "DEL PEAK 19(10Q23.31) MUTATED" 
                     TCGA-FP-7829                      TCGA-FP-7998 
  "DEL PEAK 19(10Q23.31) MUTATED" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 19(10Q23.31) WILD-TYPE" "DEL PEAK 19(10Q23.31) WILD-TYPE" 
                     TCGA-IP-7968 
"DEL PEAK 19(10Q23.31) WILD-TYPE" 
[1] "hr=" "1.8"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 19(10Q23.31) MUTATED     14   27
  DEL PEAK 19(10Q23.31) WILD-TYPE   46   71
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  FEMALE                            14                              46
  MALE                              27                              71
D48V4, multiclass
D48V5, multiclass
    clus
vv   DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  T1                             1                               5
  T2                            21                              31
  T3                             9                              52
  T4                             2                              16
D48V6, multiclass
    clus
vv   DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  N0                            10                              34
  N1                            14                              43
  N2                             5                              19
  N3                             5                              10
D48V7, multiclass
    clus
vv   DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  M0                            37                              97
  M1                             3                              13
  MX                             1                               7
D48V8, multiclass
     clus
vv    DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  I                               8                              16
  II                              8                              29
  III                            10                              33
  IV                              6                              20
D48V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 19(10Q23.31) MUTATED     40    1
  DEL PEAK 19(10Q23.31) WILD-TYPE  113    4
     clus
vv    DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  NO                              1                               4
  YES                            40                             113
D48V10, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 19(10Q23.31) MUTATED     38    3
  DEL PEAK 19(10Q23.31) WILD-TYPE  110    7
     clus
vv    DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  NO                              3                               7
  YES                            38                             110

Clustering(49) Variable = Del Peak 20(11p15.5) mutation analysis
D49V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 20(11P15.5) MUTATED"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 20(11P15.5) MUTATED"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 20(11P15.5) MUTATED"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 20(11P15.5) MUTATED"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 20(11P15.5) MUTATED"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 20(11P15.5) MUTATED"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 20(11P15.5) MUTATED"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 20(11P15.5) MUTATED"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 20(11P15.5) MUTATED"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 20(11P15.5) MUTATED"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 20(11P15.5) MUTATED"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 20(11P15.5) MUTATED"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 20(11P15.5) MUTATED" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 20(11P15.5) WILD-TYPE"   "DEL PEAK 20(11P15.5) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 20(11P15.5) WILD-TYPE" "DEL PEAK 20(11P15.5) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 20(11P15.5) MUTATED" 
[1] "hr=" "1"  
D49V2, continuous
D49V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(11P15.5) MUTATED     14   25
  DEL PEAK 20(11P15.5) WILD-TYPE   46   73
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  FEMALE                           14                             46
  MALE                             25                             73
D49V4, multiclass
D49V5, multiclass
    clus
vv   DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  T1                            2                              4
  T2                           17                             35
  T3                           12                             49
  T4                            3                             15
D49V6, multiclass
    clus
vv   DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  N0                            8                             36
  N1                           15                             42
  N2                            7                             17
  N3                            4                             11
D49V7, multiclass
    clus
vv   DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  M0                           33                            101
  M1                            4                             12
  MX                            2                              6
D49V8, multiclass
     clus
vv    DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  I                              6                             18
  II                            10                             27
  III                            9                             34
  IV                             7                             19
D49V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(11P15.5) MUTATED     37    2
  DEL PEAK 20(11P15.5) WILD-TYPE  116    3
     clus
vv    DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  NO                             2                              3
  YES                           37                            116
D49V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(11P15.5) MUTATED     36    3
  DEL PEAK 20(11P15.5) WILD-TYPE  112    7
     clus
vv    DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  NO                             3                              7
  YES                           36                            112

Clustering(50) Variable = Del Peak 21(11q23.2) mutation analysis
D50V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 21(11Q23.2) MUTATED"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 21(11Q23.2) MUTATED"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 21(11Q23.2) MUTATED"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 21(11Q23.2) MUTATED"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 21(11Q23.2) MUTATED"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 21(11Q23.2) MUTATED"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 21(11Q23.2) MUTATED"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 21(11Q23.2) MUTATED"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 21(11Q23.2) MUTATED"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 21(11Q23.2) MUTATED" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 21(11Q23.2) WILD-TYPE"   "DEL PEAK 21(11Q23.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 21(11Q23.2) WILD-TYPE" "DEL PEAK 21(11Q23.2) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 21(11Q23.2) MUTATED" 
[1] "hr=" "1.6"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(11Q23.2) MUTATED     11   22
  DEL PEAK 21(11Q23.2) WILD-TYPE   49   76
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  FEMALE                           11                             49
  MALE                             22                             76
D50V4, multiclass
D50V5, multiclass
    clus
vv   DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  T1                            2                              4
  T2                           13                             39
  T3                           12                             49
  T4                            4                             14
D50V6, multiclass
    clus
vv   DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  N0                            9                             35
  N1                           12                             45
  N2                            7                             17
  N3                            3                             12
D50V7, multiclass
    clus
vv   DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  M0                           26                            108
  M1                            5                             11
  MX                            2                              6
D50V8, multiclass
     clus
vv    DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  I                              5                             19
  II                            11                             26
  III                            8                             35
  IV                             6                             20
D50V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(11Q23.2) MUTATED     31    2
  DEL PEAK 21(11Q23.2) WILD-TYPE  122    3
     clus
vv    DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  NO                             2                              3
  YES                           31                            122
D50V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(11Q23.2) MUTATED     30    3
  DEL PEAK 21(11Q23.2) WILD-TYPE  118    7
     clus
vv    DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  NO                             3                              7
  YES                           30                            118

Clustering(51) Variable = Del Peak 22(12p13.31) mutation analysis
D51V1, survival
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 22(12P13.31) MUTATED"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7998 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-IP-7968 
  "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 22(12P13.31) MUTATED"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7998 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-IP-7968 
  "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 22(12P13.31) WILD-TYPE"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 22(12P13.31) MUTATED"   "DEL PEAK 22(12P13.31) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "DEL PEAK 22(12P13.31) MUTATED" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7998 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 22(12P13.31) WILD-TYPE" "DEL PEAK 22(12P13.31) WILD-TYPE" 
                     TCGA-IP-7968 
  "DEL PEAK 22(12P13.31) MUTATED" 
[1] "hr=" "1.6"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(12P13.31) MUTATED     13   16
  DEL PEAK 22(12P13.31) WILD-TYPE   47   82
        clus
vv       DEL PEAK 22(12P13.31) MUTATED DEL PEAK 22(12P13.31) WILD-TYPE
  FEMALE                            13                              47
  MALE                              16                              82
D51V4, multiclass
D51V5, multiclass
    clus
vv   DEL PEAK 22(12P13.31) MUTATED DEL PEAK 22(12P13.31) WILD-TYPE
  T1                             0                               6
  T2                            10                              42
  T3                            11                              50
  T4                             2                              16
D51V6, multiclass
    clus
vv   DEL PEAK 22(12P13.31) MUTATED DEL PEAK 22(12P13.31) WILD-TYPE
  N0                             9                              35
  N1                             8                              49
  N2                             3                              21
  N3                             3                              12
D51V7, multiclass
    clus
vv   DEL PEAK 22(12P13.31) MUTATED DEL PEAK 22(12P13.31) WILD-TYPE
  M0                            25                             109
  M1                             2                              14
  MX                             2                               6
D51V8, multiclass
     clus
vv    DEL PEAK 22(12P13.31) MUTATED DEL PEAK 22(12P13.31) WILD-TYPE
  I                               7                              17
  II                              4                              33
  III                             8                              35
  IV                              3                              23
D51V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(12P13.31) MUTATED     28    1
  DEL PEAK 22(12P13.31) WILD-TYPE  125    4
     clus
vv    DEL PEAK 22(12P13.31) MUTATED DEL PEAK 22(12P13.31) WILD-TYPE
  NO                              1                               4
  YES                            28                             125
D51V10, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(12P13.31) MUTATED     27    2
  DEL PEAK 22(12P13.31) WILD-TYPE  121    8
     clus
vv    DEL PEAK 22(12P13.31) MUTATED DEL PEAK 22(12P13.31) WILD-TYPE
  NO                              2                               8
  YES                            27                             121

Clustering(52) Variable = Del Peak 23(13q33.1) mutation analysis
D52V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 23(13Q33.1) MUTATED" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 23(13Q33.1) MUTATED" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 23(13Q33.1) MUTATED" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 23(13Q33.1) MUTATED" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 23(13Q33.1) MUTATED" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 23(13Q33.1) MUTATED" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 23(13Q33.1) MUTATED" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 23(13Q33.1) WILD-TYPE"   "DEL PEAK 23(13Q33.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 23(13Q33.1) MUTATED" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 23(13Q33.1) MUTATED" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 23(13Q33.1) WILD-TYPE" "DEL PEAK 23(13Q33.1) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 23(13Q33.1) WILD-TYPE" 
[1] "hr="     "2.4e+08"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(13Q33.1) MUTATED     10   10
  DEL PEAK 23(13Q33.1) WILD-TYPE   50   88
        clus
vv       DEL PEAK 23(13Q33.1) MUTATED DEL PEAK 23(13Q33.1) WILD-TYPE
  FEMALE                           10                             50
  MALE                             10                             88
D52V4, multiclass
D52V5, multiclass
    clus
vv   DEL PEAK 23(13Q33.1) MUTATED DEL PEAK 23(13Q33.1) WILD-TYPE
  T1                            0                              6
  T2                            7                             45
  T3                            7                             54
  T4                            3                             15
D52V6, multiclass
    clus
vv   DEL PEAK 23(13Q33.1) MUTATED DEL PEAK 23(13Q33.1) WILD-TYPE
  N0                            2                             42
  N1                            8                             49
  N2                            5                             19
  N3                            1                             14
D52V7, multiclass
    clus
vv   DEL PEAK 23(13Q33.1) MUTATED DEL PEAK 23(13Q33.1) WILD-TYPE
  M0                           17                            117
  M1                            1                             15
  MX                            2                              6
D52V8, multiclass
     clus
vv    DEL PEAK 23(13Q33.1) MUTATED DEL PEAK 23(13Q33.1) WILD-TYPE
  I                              2                             22
  II                             1                             36
  III                            9                             34
  IV                             4                             22
D52V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(13Q33.1) MUTATED     18    2
  DEL PEAK 23(13Q33.1) WILD-TYPE  135    3
     clus
vv    DEL PEAK 23(13Q33.1) MUTATED DEL PEAK 23(13Q33.1) WILD-TYPE
  NO                             2                              3
  YES                           18                            135
D52V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(13Q33.1) MUTATED     17    3
  DEL PEAK 23(13Q33.1) WILD-TYPE  131    7
     clus
vv    DEL PEAK 23(13Q33.1) MUTATED DEL PEAK 23(13Q33.1) WILD-TYPE
  NO                             3                              7
  YES                           17                            131

Clustering(53) Variable = Del Peak 24(14q23.3) mutation analysis
D53V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 24(14Q23.3) WILD-TYPE"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 24(14Q23.3) MUTATED"   "DEL PEAK 24(14Q23.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 24(14Q23.3) WILD-TYPE" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK 24(14Q23.3) MUTATED" "DEL PEAK 24(14Q23.3) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 24(14Q23.3) MUTATED" 
[1] "hr=" "1.4"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(14Q23.3) MUTATED     17   25
  DEL PEAK 24(14Q23.3) WILD-TYPE   43   73
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  FEMALE                           17                             43
  MALE                             25                             73
D53V4, multiclass
D53V5, multiclass
    clus
vv   DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  T1                            0                              6
  T2                           14                             38
  T3                           18                             43
  T4                            2                             16
D53V6, multiclass
    clus
vv   DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  N0                           10                             34
  N1                           15                             42
  N2                           10                             14
  N3                            1                             14
D53V7, multiclass
    clus
vv   DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  M0                           39                             95
  M1                            1                             15
  MX                            2                              6
D53V8, multiclass
     clus
vv    DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  I                              5                             19
  II                            10                             27
  III                           16                             27
  IV                             3                             23
D53V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(14Q23.3) MUTATED     40    2
  DEL PEAK 24(14Q23.3) WILD-TYPE  113    3
     clus
vv    DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  NO                             2                              3
  YES                           40                            113
D53V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(14Q23.3) MUTATED     37    5
  DEL PEAK 24(14Q23.3) WILD-TYPE  111    5
     clus
vv    DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  NO                             5                              5
  YES                           37                            111

Clustering(54) Variable = Del Peak 25(14q32.33) mutation analysis
D54V1, survival
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 25(14Q32.33) MUTATED"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 25(14Q32.33) MUTATED"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "DEL PEAK 25(14Q32.33) MUTATED"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7998 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-IP-7968 
  "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 25(14Q32.33) MUTATED"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 25(14Q32.33) MUTATED"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "DEL PEAK 25(14Q32.33) MUTATED"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7998 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-IP-7968 
  "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 25(14Q32.33) MUTATED"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 25(14Q32.33) MUTATED"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 25(14Q32.33) WILD-TYPE"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "DEL PEAK 25(14Q32.33) MUTATED"   "DEL PEAK 25(14Q32.33) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7998 
"DEL PEAK 25(14Q32.33) WILD-TYPE" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
  "DEL PEAK 25(14Q32.33) MUTATED" "DEL PEAK 25(14Q32.33) WILD-TYPE" 
                     TCGA-IP-7968 
  "DEL PEAK 25(14Q32.33) MUTATED" 
[1] "hr=" "6.7"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(14Q32.33) MUTATED     17   25
  DEL PEAK 25(14Q32.33) WILD-TYPE   43   73
        clus
vv       DEL PEAK 25(14Q32.33) MUTATED DEL PEAK 25(14Q32.33) WILD-TYPE
  FEMALE                            17                              43
  MALE                              25                              73
D54V4, multiclass
D54V5, multiclass
    clus
vv   DEL PEAK 25(14Q32.33) MUTATED DEL PEAK 25(14Q32.33) WILD-TYPE
  T1                             1                               5
  T2                            16                              36
  T3                            17                              44
  T4                             2                              16
D54V6, multiclass
    clus
vv   DEL PEAK 25(14Q32.33) MUTATED DEL PEAK 25(14Q32.33) WILD-TYPE
  N0                            11                              33
  N1                            15                              42
  N2                            10                              14
  N3                             1                              14
D54V7, multiclass
    clus
vv   DEL PEAK 25(14Q32.33) MUTATED DEL PEAK 25(14Q32.33) WILD-TYPE
  M0                            40                              94
  M1                             0                              16
  MX                             2                               6
D54V8, multiclass
     clus
vv    DEL PEAK 25(14Q32.33) MUTATED DEL PEAK 25(14Q32.33) WILD-TYPE
  I                               6                              18
  II                              9                              28
  III                            17                              26
  IV                              3                              23
D54V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(14Q32.33) MUTATED     39    3
  DEL PEAK 25(14Q32.33) WILD-TYPE  114    2
     clus
vv    DEL PEAK 25(14Q32.33) MUTATED DEL PEAK 25(14Q32.33) WILD-TYPE
  NO                              3                               2
  YES                            39                             114
D54V10, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(14Q32.33) MUTATED     37    5
  DEL PEAK 25(14Q32.33) WILD-TYPE  111    5
     clus
vv    DEL PEAK 25(14Q32.33) MUTATED DEL PEAK 25(14Q32.33) WILD-TYPE
  NO                              5                               5
  YES                            37                             111

Clustering(55) Variable = Del Peak 26(15q11.2) mutation analysis
D55V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 26(15Q11.2) WILD-TYPE"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 26(15Q11.2) MUTATED"   "DEL PEAK 26(15Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 26(15Q11.2) MUTATED" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 26(15Q11.2) WILD-TYPE" "DEL PEAK 26(15Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 26(15Q11.2) MUTATED" 
[1] "hr=" "2.5"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(15Q11.2) MUTATED     13   31
  DEL PEAK 26(15Q11.2) WILD-TYPE   47   67
        clus
vv       DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  FEMALE                           13                             47
  MALE                             31                             67
D55V4, multiclass
D55V5, multiclass
    clus
vv   DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  T1                            1                              5
  T2                           17                             35
  T3                           16                             45
  T4                            2                             16
D55V6, multiclass
    clus
vv   DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  N0                           12                             32
  N1                            9                             48
  N2                            9                             15
  N3                            6                              9
D55V7, multiclass
    clus
vv   DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  M0                           39                             95
  M1                            3                             13
  MX                            2                              6
D55V8, multiclass
     clus
vv    DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  I                              7                             17
  II                             7                             30
  III                           13                             30
  IV                             7                             19
D55V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(15Q11.2) MUTATED     41    3
  DEL PEAK 26(15Q11.2) WILD-TYPE  112    2
     clus
vv    DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  NO                             3                              2
  YES                           41                            112
D55V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(15Q11.2) MUTATED     39    5
  DEL PEAK 26(15Q11.2) WILD-TYPE  109    5
     clus
vv    DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  NO                             5                              5
  YES                           39                            109

Clustering(56) Variable = Del Peak 27(16p13.3) mutation analysis
D56V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 27(16P13.3) WILD-TYPE" 
[1] "hr=" "1.8"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(16P13.3) MUTATED      8   17
  DEL PEAK 27(16P13.3) WILD-TYPE   52   81
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  FEMALE                            8                             52
  MALE                             17                             81
D56V4, multiclass
D56V5, multiclass
    clus
vv   DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  T1                            0                              6
  T2                            7                             45
  T3                           10                             51
  T4                            1                             17
D56V6, multiclass
    clus
vv   DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  N0                            6                             38
  N1                           11                             46
  N2                            1                             23
  N3                            2                             13
D56V7, multiclass
    clus
vv   DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  M0                           24                            110
  M1                            1                             15
  MX                            0                              8
D56V8, multiclass
     clus
vv    DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  I                              3                             21
  II                             6                             31
  III                            5                             38
  IV                             3                             23
D56V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(16P13.3) MUTATED     24    1
  DEL PEAK 27(16P13.3) WILD-TYPE  129    4
     clus
vv    DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  NO                             1                              4
  YES                           24                            129
D56V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(16P13.3) MUTATED     23    2
  DEL PEAK 27(16P13.3) WILD-TYPE  125    8
     clus
vv    DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  NO                             2                              8
  YES                           23                            125

Clustering(57) Variable = Del Peak 28(16q23.1) mutation analysis
D57V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-IP-7968 
"DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-IP-7968 
"DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-IP-7968 
"DEL PEAK 28(16Q23.1) WILD-TYPE" 
[1] "hr=" "3"  
D57V2, continuous
D57V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(16Q23.1) MUTATED     17   45
  DEL PEAK 28(16Q23.1) WILD-TYPE   43   53
        clus
vv       DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  FEMALE                           17                             43
  MALE                             45                             53
D57V4, multiclass
D57V5, multiclass
    clus
vv   DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  T1                            1                              5
  T2                           22                             30
  T3                           27                             34
  T4                            5                             13
D57V6, multiclass
    clus
vv   DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  N0                           14                             30
  N1                           26                             31
  N2                            8                             16
  N3                            9                              6
D57V7, multiclass
    clus
vv   DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  M0                           57                             77
  M1                            2                             14
  MX                            3                              5
D57V8, multiclass
     clus
vv    DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  I                              8                             16
  II                            18                             19
  III                           21                             22
  IV                             6                             20
D57V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(16Q23.1) MUTATED     59    3
  DEL PEAK 28(16Q23.1) WILD-TYPE   94    2
     clus
vv    DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  NO                             3                              2
  YES                           59                             94
D57V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(16Q23.1) MUTATED     55    7
  DEL PEAK 28(16Q23.1) WILD-TYPE   93    3
     clus
vv    DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  NO                             7                              3
  YES                           55                             93

Clustering(58) Variable = Del Peak 29(17p12) mutation analysis
D58V1, survival
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-IP-7968 
  "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-IP-7968 
  "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "DEL PEAK 29(17P12) MUTATED"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 29(17P12) WILD-TYPE"   "DEL PEAK 29(17P12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7998 
"DEL PEAK 29(17P12) WILD-TYPE" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
  "DEL PEAK 29(17P12) MUTATED" "DEL PEAK 29(17P12) WILD-TYPE" 
                  TCGA-IP-7968 
  "DEL PEAK 29(17P12) MUTATED" 
[1] "hr=" "4.7"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 29(17P12) MUTATED     23   37
  DEL PEAK 29(17P12) WILD-TYPE   37   61
        clus
vv       DEL PEAK 29(17P12) MUTATED DEL PEAK 29(17P12) WILD-TYPE
  FEMALE                         23                           37
  MALE                           37                           61
D58V4, multiclass
D58V5, multiclass
    clus
vv   DEL PEAK 29(17P12) MUTATED DEL PEAK 29(17P12) WILD-TYPE
  T1                          1                            5
  T2                         27                           25
  T3                         21                           40
  T4                          3                           15
D58V6, multiclass
    clus
vv   DEL PEAK 29(17P12) MUTATED DEL PEAK 29(17P12) WILD-TYPE
  N0                         19                           25
  N1                         16                           41
  N2                         12                           12
  N3                          4                           11
D58V7, multiclass
    clus
vv   DEL PEAK 29(17P12) MUTATED DEL PEAK 29(17P12) WILD-TYPE
  M0                         54                           80
  M1                          4                           12
  MX                          2                            6
D58V8, multiclass
     clus
vv    DEL PEAK 29(17P12) MUTATED DEL PEAK 29(17P12) WILD-TYPE
  I                           11                           13
  II                          18                           19
  III                         13                           30
  IV                           8                           18
D58V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 29(17P12) MUTATED     56    4
  DEL PEAK 29(17P12) WILD-TYPE   97    1
     clus
vv    DEL PEAK 29(17P12) MUTATED DEL PEAK 29(17P12) WILD-TYPE
  NO                           4                            1
  YES                         56                           97
D58V10, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 29(17P12) MUTATED     52    8
  DEL PEAK 29(17P12) WILD-TYPE   96    2
     clus
vv    DEL PEAK 29(17P12) MUTATED DEL PEAK 29(17P12) WILD-TYPE
  NO                           8                            2
  YES                         52                           96

Clustering(59) Variable = Del Peak 30(17q21.2) mutation analysis
D59V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 30(17Q21.2) MUTATED" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 30(17Q21.2) MUTATED" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 30(17Q21.2) MUTATED" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 30(17Q21.2) MUTATED" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 30(17Q21.2) MUTATED" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 30(17Q21.2) MUTATED" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 30(17Q21.2) MUTATED" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 30(17Q21.2) MUTATED" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 30(17Q21.2) MUTATED" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 30(17Q21.2) WILD-TYPE"   "DEL PEAK 30(17Q21.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 30(17Q21.2) WILD-TYPE" "DEL PEAK 30(17Q21.2) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 30(17Q21.2) WILD-TYPE" 
[1] "hr="     "2.6e+08"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(17Q21.2) MUTATED      9   12
  DEL PEAK 30(17Q21.2) WILD-TYPE   51   86
        clus
vv       DEL PEAK 30(17Q21.2) MUTATED DEL PEAK 30(17Q21.2) WILD-TYPE
  FEMALE                            9                             51
  MALE                             12                             86
D59V4, multiclass
D59V5, multiclass
    clus
vv   DEL PEAK 30(17Q21.2) MUTATED DEL PEAK 30(17Q21.2) WILD-TYPE
  T1                            0                              6
  T2                            9                             43
  T3                            6                             55
  T4                            1                             17
D59V6, multiclass
    clus
vv   DEL PEAK 30(17Q21.2) MUTATED DEL PEAK 30(17Q21.2) WILD-TYPE
  N0                            3                             41
  N1                           10                             47
  N2                            2                             22
  N3                            1                             14
D59V7, multiclass
    clus
vv   DEL PEAK 30(17Q21.2) MUTATED DEL PEAK 30(17Q21.2) WILD-TYPE
  M0                           21                            113
  M1                            0                             16
  MX                            0                              8
D59V8, multiclass
     clus
vv    DEL PEAK 30(17Q21.2) MUTATED DEL PEAK 30(17Q21.2) WILD-TYPE
  I                              1                             23
  II                             8                             29
  III                            5                             38
  IV                             1                             25
D59V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(17Q21.2) MUTATED     21    0
  DEL PEAK 30(17Q21.2) WILD-TYPE  132    5
     clus
vv    DEL PEAK 30(17Q21.2) MUTATED DEL PEAK 30(17Q21.2) WILD-TYPE
  NO                             0                              5
  YES                           21                            132
D59V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(17Q21.2) MUTATED     20    1
  DEL PEAK 30(17Q21.2) WILD-TYPE  128    9
     clus
vv    DEL PEAK 30(17Q21.2) MUTATED DEL PEAK 30(17Q21.2) WILD-TYPE
  NO                             1                              9
  YES                           20                            128

Clustering(60) Variable = Del Peak 31(17q24.3) mutation analysis
D60V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 31(17Q24.3) MUTATED"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 31(17Q24.3) MUTATED"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 31(17Q24.3) MUTATED"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 31(17Q24.3) WILD-TYPE"   "DEL PEAK 31(17Q24.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 31(17Q24.3) MUTATED" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 31(17Q24.3) WILD-TYPE" "DEL PEAK 31(17Q24.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 31(17Q24.3) WILD-TYPE" 
[1] "hr=" "1.3"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(17Q24.3) MUTATED     10   16
  DEL PEAK 31(17Q24.3) WILD-TYPE   50   82
        clus
vv       DEL PEAK 31(17Q24.3) MUTATED DEL PEAK 31(17Q24.3) WILD-TYPE
  FEMALE                           10                             50
  MALE                             16                             82
D60V4, multiclass
D60V5, multiclass
    clus
vv   DEL PEAK 31(17Q24.3) MUTATED DEL PEAK 31(17Q24.3) WILD-TYPE
  T1                            0                              6
  T2                            7                             45
  T3                           10                             51
  T4                            3                             15
D60V6, multiclass
    clus
vv   DEL PEAK 31(17Q24.3) MUTATED DEL PEAK 31(17Q24.3) WILD-TYPE
  N0                            5                             39
  N1                            5                             52
  N2                            8                             16
  N3                            2                             13
D60V7, multiclass
    clus
vv   DEL PEAK 31(17Q24.3) MUTATED DEL PEAK 31(17Q24.3) WILD-TYPE
  M0                           23                            111
  M1                            3                             13
  MX                            0                              8
D60V8, multiclass
     clus
vv    DEL PEAK 31(17Q24.3) MUTATED DEL PEAK 31(17Q24.3) WILD-TYPE
  I                              2                             22
  II                             6                             31
  III                            6                             37
  IV                             5                             21
D60V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(17Q24.3) MUTATED     26    0
  DEL PEAK 31(17Q24.3) WILD-TYPE  127    5
     clus
vv    DEL PEAK 31(17Q24.3) MUTATED DEL PEAK 31(17Q24.3) WILD-TYPE
  NO                             0                              5
  YES                           26                            127
D60V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(17Q24.3) MUTATED     24    2
  DEL PEAK 31(17Q24.3) WILD-TYPE  124    8
     clus
vv    DEL PEAK 31(17Q24.3) MUTATED DEL PEAK 31(17Q24.3) WILD-TYPE
  NO                             2                              8
  YES                           24                            124

Clustering(61) Variable = Del Peak 32(18q21.2) mutation analysis
D61V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-IP-7968 
  "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-IP-7968 
  "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 32(18Q21.2) MUTATED" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 32(18Q21.2) WILD-TYPE" "DEL PEAK 32(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "DEL PEAK 32(18Q21.2) MUTATED"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 32(18Q21.2) WILD-TYPE"   "DEL PEAK 32(18Q21.2) MUTATED" 
                    TCGA-IP-7968 
  "DEL PEAK 32(18Q21.2) MUTATED" 
[1] "hr=" "1.7"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(18Q21.2) MUTATED     27   40
  DEL PEAK 32(18Q21.2) WILD-TYPE   33   58
        clus
vv       DEL PEAK 32(18Q21.2) MUTATED DEL PEAK 32(18Q21.2) WILD-TYPE
  FEMALE                           27                             33
  MALE                             40                             58
D61V4, multiclass
D61V5, multiclass
    clus
vv   DEL PEAK 32(18Q21.2) MUTATED DEL PEAK 32(18Q21.2) WILD-TYPE
  T1                            0                              6
  T2                           24                             28
  T3                           28                             33
  T4                            8                             10
D61V6, multiclass
    clus
vv   DEL PEAK 32(18Q21.2) MUTATED DEL PEAK 32(18Q21.2) WILD-TYPE
  N0                           11                             33
  N1                           25                             32
  N2                           11                             13
  N3                           11                              4
D61V7, multiclass
    clus
vv   DEL PEAK 32(18Q21.2) MUTATED DEL PEAK 32(18Q21.2) WILD-TYPE
  M0                           56                             78
  M1                            8                              8
  MX                            3                              5
D61V8, multiclass
     clus
vv    DEL PEAK 32(18Q21.2) MUTATED DEL PEAK 32(18Q21.2) WILD-TYPE
  I                              7                             17
  II                            13                             24
  III                           22                             21
  IV                            14                             12
D61V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(18Q21.2) MUTATED     65    2
  DEL PEAK 32(18Q21.2) WILD-TYPE   88    3
     clus
vv    DEL PEAK 32(18Q21.2) MUTATED DEL PEAK 32(18Q21.2) WILD-TYPE
  NO                             2                              3
  YES                           65                             88
D61V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(18Q21.2) MUTATED     60    7
  DEL PEAK 32(18Q21.2) WILD-TYPE   88    3
     clus
vv    DEL PEAK 32(18Q21.2) MUTATED DEL PEAK 32(18Q21.2) WILD-TYPE
  NO                             7                              3
  YES                           60                             88

Clustering(62) Variable = Del Peak 33(19p13.3) mutation analysis
D62V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 33(19P13.3) WILD-TYPE"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 33(19P13.3) MUTATED"   "DEL PEAK 33(19P13.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 33(19P13.3) WILD-TYPE" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 33(19P13.3) MUTATED" 
[1] "hr=" "2.4"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(19P13.3) MUTATED     18   39
  DEL PEAK 33(19P13.3) WILD-TYPE   42   59
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  FEMALE                           18                             42
  MALE                             39                             59
D62V4, multiclass
D62V5, multiclass
    clus
vv   DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  T1                            1                              5
  T2                           20                             32
  T3                           22                             39
  T4                            4                             14
D62V6, multiclass
    clus
vv   DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  N0                           12                             32
  N1                           20                             37
  N2                            9                             15
  N3                            7                              8
D62V7, multiclass
    clus
vv   DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  M0                           50                             84
  M1                            4                             12
  MX                            3                              5
D62V8, multiclass
     clus
vv    DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  I                              7                             17
  II                            15                             22
  III                           14                             29
  IV                             9                             17
D62V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(19P13.3) MUTATED     53    4
  DEL PEAK 33(19P13.3) WILD-TYPE  100    1
     clus
vv    DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  NO                             4                              1
  YES                           53                            100
D62V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(19P13.3) MUTATED     51    6
  DEL PEAK 33(19P13.3) WILD-TYPE   97    4
     clus
vv    DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  NO                             6                              4
  YES                           51                             97

Clustering(63) Variable = Del Peak 34(20p12.1) mutation analysis
D63V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 34(20P12.1) MUTATED" 
[1] "hr=" "2"  
D63V2, continuous
D63V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(20P12.1) MUTATED     14   16
  DEL PEAK 34(20P12.1) WILD-TYPE   46   82
        clus
vv       DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE
  FEMALE                           14                             46
  MALE                             16                             82
D63V4, multiclass
D63V5, multiclass
    clus
vv   DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE
  T1                            0                              6
  T2                           10                             42
  T3                            9                             52
  T4                            5                             13
D63V6, multiclass
    clus
vv   DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE
  N0                            8                             36
  N1                            9                             48
  N2                            6                             18
  N3                            2                             13
D63V7, multiclass
    clus
vv   DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE
  M0                           25                            109
  M1                            2                             14
  MX                            3                              5
D63V8, multiclass
     clus
vv    DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE
  I                              5                             19
  II                             6                             31
  III                            8                             35
  IV                             5                             21
D63V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(20P12.1) MUTATED     28    2
  DEL PEAK 34(20P12.1) WILD-TYPE  125    3
     clus
vv    DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE
  NO                             2                              3
  YES                           28                            125
D63V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(20P12.1) MUTATED     27    3
  DEL PEAK 34(20P12.1) WILD-TYPE  121    7
     clus
vv    DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE
  NO                             3                              7
  YES                           27                            121

Clustering(64) Variable = Del Peak 35(21q11.2) mutation analysis
D64V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
  "DEL PEAK 35(21Q11.2) MUTATED" 
[1] "hr=" "1.5"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(21Q11.2) MUTATED     23   31
  DEL PEAK 35(21Q11.2) WILD-TYPE   37   67
        clus
vv       DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  FEMALE                           23                             37
  MALE                             31                             67
D64V4, multiclass
D64V5, multiclass
    clus
vv   DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  T1                            0                              6
  T2                           19                             33
  T3                           23                             38
  T4                            5                             13
D64V6, multiclass
    clus
vv   DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  N0                           13                             31
  N1                           19                             38
  N2                            9                             15
  N3                            7                              8
D64V7, multiclass
    clus
vv   DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  M0                           45                             89
  M1                            5                             11
  MX                            4                              4
D64V8, multiclass
     clus
vv    DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  I                              7                             17
  II                            13                             24
  III                           17                             26
  IV                             9                             17
D64V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(21Q11.2) MUTATED     52    2
  DEL PEAK 35(21Q11.2) WILD-TYPE  101    3
     clus
vv    DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  NO                             2                              3
  YES                           52                            101
D64V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(21Q11.2) MUTATED     49    5
  DEL PEAK 35(21Q11.2) WILD-TYPE   99    5
     clus
vv    DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  NO                             5                              5
  YES                           49                             99

Clustering(65) Variable = Del Peak 36(22q13.31) mutation analysis
D65V1, survival
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7998 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-IP-7968 
  "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7998 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-IP-7968 
  "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7998 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-IP-7968 
  "DEL PEAK 36(22Q13.31) MUTATED" 
[1] "hr=" "1"  
D65V2, continuous
D65V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 36(22Q13.31) MUTATED     22   31
  DEL PEAK 36(22Q13.31) WILD-TYPE   38   67
        clus
vv       DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE
  FEMALE                            22                              38
  MALE                              31                              67
D65V4, multiclass
D65V5, multiclass
    clus
vv   DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE
  T1                             0                               6
  T2                            19                              33
  T3                            19                              42
  T4                             5                              13
D65V6, multiclass
    clus
vv   DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE
  N0                            11                              33
  N1                            20                              37
  N2                             8                              16
  N3                             7                               8
D65V7, multiclass
    clus
vv   DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE
  M0                            46                              88
  M1                             5                              11
  MX                             2                               6
D65V8, multiclass
     clus
vv    DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE
  I                               7                              17
  II                             13                              24
  III                            14                              29
  IV                              8                              18
D65V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 36(22Q13.31) MUTATED     50    3
  DEL PEAK 36(22Q13.31) WILD-TYPE  103    2
     clus
vv    DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE
  NO                              3                               2
  YES                            50                             103
D65V10, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 36(22Q13.31) MUTATED     47    6
  DEL PEAK 36(22Q13.31) WILD-TYPE  101    4
     clus
vv    DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE
  NO                              6                               4
  YES                            47                             101

Clustering(66) Variable = Del Peak 37(Xp22.2) mutation analysis
D66V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 37(XP22.2) MUTATED"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 37(XP22.2) MUTATED"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 37(XP22.2) MUTATED"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK 37(XP22.2) MUTATED"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-IP-7968 
"DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 37(XP22.2) MUTATED"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 37(XP22.2) MUTATED"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 37(XP22.2) MUTATED"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK 37(XP22.2) MUTATED"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-IP-7968 
"DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 37(XP22.2) MUTATED" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 37(XP22.2) WILD-TYPE"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 37(XP22.2) MUTATED"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 37(XP22.2) MUTATED"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 37(XP22.2) MUTATED"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 37(XP22.2) WILD-TYPE" "DEL PEAK 37(XP22.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK 37(XP22.2) MUTATED"   "DEL PEAK 37(XP22.2) MUTATED" 
                   TCGA-IP-7968 
"DEL PEAK 37(XP22.2) WILD-TYPE" 
[1] "hr=" "1.7"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 37(XP22.2) MUTATED     12   19
  DEL PEAK 37(XP22.2) WILD-TYPE   48   79
        clus
vv       DEL PEAK 37(XP22.2) MUTATED DEL PEAK 37(XP22.2) WILD-TYPE
  FEMALE                          12                            48
  MALE                            19                            79
D66V4, multiclass
D66V5, multiclass
    clus
vv   DEL PEAK 37(XP22.2) MUTATED DEL PEAK 37(XP22.2) WILD-TYPE
  T1                           0                             6
  T2                          13                            39
  T3                           9                            52
  T4                           4                            14
D66V6, multiclass
    clus
vv   DEL PEAK 37(XP22.2) MUTATED DEL PEAK 37(XP22.2) WILD-TYPE
  N0                           6                            38
  N1                          12                            45
  N2                           6                            18
  N3                           3                            12
D66V7, multiclass
    clus
vv   DEL PEAK 37(XP22.2) MUTATED DEL PEAK 37(XP22.2) WILD-TYPE
  M0                          28                           106
  M1                           3                            13
  MX                           0                             8
D66V8, multiclass
     clus
vv    DEL PEAK 37(XP22.2) MUTATED DEL PEAK 37(XP22.2) WILD-TYPE
  I                             4                            20
  II                            8                            29
  III                           9                            34
  IV                            4                            22
D66V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 37(XP22.2) MUTATED     30    1
  DEL PEAK 37(XP22.2) WILD-TYPE  123    4
     clus
vv    DEL PEAK 37(XP22.2) MUTATED DEL PEAK 37(XP22.2) WILD-TYPE
  NO                            1                             4
  YES                          30                           123
D66V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 37(XP22.2) MUTATED     28    3
  DEL PEAK 37(XP22.2) WILD-TYPE  120    7
     clus
vv    DEL PEAK 37(XP22.2) MUTATED DEL PEAK 37(XP22.2) WILD-TYPE
  NO                            3                             7
  YES                          28                           120

Clustering(67) Variable = Del Peak 38(Xp21.1) mutation analysis
D67V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 38(XP21.1) WILD-TYPE"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 38(XP21.1) WILD-TYPE"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 38(XP21.1) WILD-TYPE"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 38(XP21.1) WILD-TYPE"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-IP-7968 
"DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 38(XP21.1) WILD-TYPE"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 38(XP21.1) WILD-TYPE"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 38(XP21.1) WILD-TYPE"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 38(XP21.1) WILD-TYPE"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-IP-7968 
"DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 38(XP21.1) WILD-TYPE"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 38(XP21.1) WILD-TYPE"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 38(XP21.1) WILD-TYPE"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 38(XP21.1) MUTATED" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 38(XP21.1) WILD-TYPE"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7998 
"DEL PEAK 38(XP21.1) WILD-TYPE" "DEL PEAK 38(XP21.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
  "DEL PEAK 38(XP21.1) MUTATED"   "DEL PEAK 38(XP21.1) MUTATED" 
                   TCGA-IP-7968 
"DEL PEAK 38(XP21.1) WILD-TYPE" 
[1] "hr=" "1.7"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 38(XP21.1) MUTATED      8   22
  DEL PEAK 38(XP21.1) WILD-TYPE   52   76
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  FEMALE                           8                            52
  MALE                            22                            76
D67V4, multiclass
D67V5, multiclass
    clus
vv   DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  T1                           1                             5
  T2                          12                            40
  T3                          10                            51
  T4                           3                            15
D67V6, multiclass
    clus
vv   DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  N0                           6                            38
  N1                          10                            47
  N2                           5                            19
  N3                           6                             9
D67V7, multiclass
    clus
vv   DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  M0                          26                           108
  M1                           4                            12
  MX                           0                             8
D67V8, multiclass
     clus
vv    DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  I                             5                            19
  II                            5                            32
  III                           9                            34
  IV                            6                            20
D67V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 38(XP21.1) MUTATED     30    0
  DEL PEAK 38(XP21.1) WILD-TYPE  123    5
     clus
vv    DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  NO                            0                             5
  YES                          30                           123
D67V10, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 38(XP21.1) MUTATED     28    2
  DEL PEAK 38(XP21.1) WILD-TYPE  120    8
     clus
vv    DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  NO                            2                             8
  YES                          28                           120

Clustering(68) Variable = Del Peak 39(Xq21.33) mutation analysis
D68V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 39(XQ21.33) MUTATED"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 39(XQ21.33) MUTATED"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 39(XQ21.33) MUTATED"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 39(XQ21.33) MUTATED"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 39(XQ21.33) MUTATED"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 39(XQ21.33) MUTATED"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 39(XQ21.33) WILD-TYPE"   "DEL PEAK 39(XQ21.33) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7998 
"DEL PEAK 39(XQ21.33) WILD-TYPE" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
  "DEL PEAK 39(XQ21.33) MUTATED" "DEL PEAK 39(XQ21.33) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 39(XQ21.33) WILD-TYPE" 
[1] "hr=" "2.1"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(XQ21.33) MUTATED      9   16
  DEL PEAK 39(XQ21.33) WILD-TYPE   51   82
        clus
vv       DEL PEAK 39(XQ21.33) MUTATED DEL PEAK 39(XQ21.33) WILD-TYPE
  FEMALE                            9                             51
  MALE                             16                             82
D68V4, multiclass
D68V5, multiclass
    clus
vv   DEL PEAK 39(XQ21.33) MUTATED DEL PEAK 39(XQ21.33) WILD-TYPE
  T1                            1                              5
  T2                           11                             41
  T3                            6                             55
  T4                            2                             16
D68V6, multiclass
    clus
vv   DEL PEAK 39(XQ21.33) MUTATED DEL PEAK 39(XQ21.33) WILD-TYPE
  N0                           10                             34
  N1                            6                             51
  N2                            2                             22
  N3                            2                             13
D68V7, multiclass
    clus
vv   DEL PEAK 39(XQ21.33) MUTATED DEL PEAK 39(XQ21.33) WILD-TYPE
  M0                           24                            110
  M1                            1                             15
  MX                            0                              8
D68V8, multiclass
     clus
vv    DEL PEAK 39(XQ21.33) MUTATED DEL PEAK 39(XQ21.33) WILD-TYPE
  I                              7                             17
  II                             4                             33
  III                            4                             39
  IV                             4                             22
D68V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(XQ21.33) MUTATED     24    1
  DEL PEAK 39(XQ21.33) WILD-TYPE  129    4
     clus
vv    DEL PEAK 39(XQ21.33) MUTATED DEL PEAK 39(XQ21.33) WILD-TYPE
  NO                             1                              4
  YES                           24                            129
D68V10, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(XQ21.33) MUTATED     24    1
  DEL PEAK 39(XQ21.33) WILD-TYPE  124    9
     clus
vv    DEL PEAK 39(XQ21.33) MUTATED DEL PEAK 39(XQ21.33) WILD-TYPE
  NO                             1                              9
  YES                           24                            124
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                     "HISTOLOGICAL.TYPE" 
                                      V5 
                           "PATHOLOGY.T" 
                                      V6 
                           "PATHOLOGY.N" 
                                      V7 
                   "PATHOLOGICSPREAD(M)" 
                                      V8 
                           "TUMOR.STAGE" 
                                      V9 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V10 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
