# Created: Thu Aug 30 03:56:19 EDT 2012 by cgaadm_deadline
# Job: 160065    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: GDAC_MutSig_Report urn:lsid:broadinstitute.org:cancer.genome.analysis:00413:16
# Parameters: 
#    bar_plot = STAD.bargraphs.png   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.bargraphs.png
#    breakdown_table = STAD.mutation_breakdown.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.mutation_breakdown.txt
#    categories_table = STAD.mutation_rates.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.mutation_rates.txt
#    coverage.png = STAD.covplot.png   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.covplot.png
#    sig_table = STAD.sig_genes.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.sig_genes.txt
#    cosmic_table = STAD.cosmic_sig_genes.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.cosmic_sig_genes.txt
#    cosmic_table2 = STAD.cosmic_sig_genes2.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.cosmic_sig_genes2.txt
#    cosmic_muts_table = STAD.cosmic_mutations.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.cosmic_mutations.txt
#    cluster_table = STAD.clustered_muts.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.clustered_muts.txt
#    geneset_table = STAD.sig_genesets.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.sig_genesets.txt
#    genset_table2 = STAD.sig_genesets_2.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.sig_genesets_2.txt
#    patients_c_and_r = STAD.patients.counts_and_rates.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.patients.counts_and_rates.txt
#    ind_set = STAD
#    mutsig_version = STAD.MutSig_version.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.MutSig_version.txt
#    coMut_plot_png = STAD_coMut.png   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160063/STAD_coMut.png
#    coMut_plot_pdf = STAD_coMut.pdf   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160063/STAD_coMut.pdf
#    stick_figures_path = generatedStickFigurePaths.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160064/generatedStickFigurePaths.txt
#    maf_path = STAD.final_analysis_set.maf   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.final_analysis_set.maf
#    mut_pre_rep_path = STAD.mutation_preprocessing_report.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160060/STAD.mutation_preprocessing_report.txt
#    mut_filt_rep_path = STAD.mutation_filtering_report.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/160062/STAD.mutation_filtering_report.txt
