Clinical Features	Time to Death		AGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		HISTOLOGICAL.TYPE		PATHOLOGY.T		PATHOLOGY.N		PATHOLOGICSPREAD(M)		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION		NEOADJUVANT.THERAPY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	18 (6%)	260	0.8672	1	0.154	1	0.097023	1	NA	NA	3.7347e-06	0.00317	0.035412	1	0.64732	1	0.27754	1	0.34466	1	0.49382	1	0.41455	1
1q gain	60 (22%)	218	0.28375	1	0.45105	1	0.74319	1	0.44551	1	0.0051674	1	0.25738	1	0.78623	1	0.24459	1	0.49151	1	1	1	0.34715	1
2p gain	70 (25%)	208	0.71307	1	0.73343	1	0.042369	1	0.19789	1	0.018645	1	0.17297	1	0.14119	1	0.092268	1	0.19447	1	0.12847	1	0.25825	1
2q gain	34 (12%)	244	0.5638	1	0.54239	1	0.83624	1	0.59079	1	2.9194e-06	0.00248	0.33862	1	0.42155	1	0.32369	1	0.029009	1	0.11001	1	0.76551	1
3p gain	33 (12%)	245	0.41001	1	0.042745	1	0.14248	1	0.26429	1	0.97869	1	0.053115	1	0.95572	1	0.49127	1	0.4999	1	1	1	0.54882	1
3q gain	124 (45%)	154	0.70501	1	0.24919	1	0.8915	1	0.30998	1	0.3475	1	0.69467	1	0.92987	1	0.26099	1	0.72177	1	1	1	0.074261	1
4p gain	10 (4%)	268	0.99719	1	0.50611	1	0.067154	1	0.79563	1	0.65141	1	0.047036	1	0.90756	1	0.64035	1	0.43398	1	1	1	0.60614	1
4q gain	7 (3%)	271	0.3174	1	0.28624	1	0.6792	1	NA	NA	0.39109	1	0.069822	1	1	1	1	1	0.59082	1	1	1	1	1
5p gain	131 (47%)	147	0.43464	1	0.077137	1	0.4972	1	0.69309	1	0.33212	1	0.036837	1	0.61197	1	0.16226	1	0.65021	1	1	1	1	1
5q gain	31 (11%)	247	0.85691	1	0.45383	1	1	1	0.52299	1	0.9785	1	0.81564	1	0.44063	1	0.55401	1	0.55984	1	0.30867	1	1	1
6p gain	27 (10%)	251	0.73879	1	0.33062	1	1	1	0.22478	1	0.036201	1	0.082584	1	0.79457	1	0.3511	1	0.066386	1	0.25184	1	1	1
6q gain	15 (5%)	263	0.8305	1	0.3199	1	0.76593	1	0.4279	1	0.0012001	1	0.4928	1	0.68908	1	1	1	0.86301	1	0.43114	1	0.66123	1
7p gain	82 (29%)	196	0.39932	1	0.5478	1	0.65646	1	0.61899	1	0.76222	1	0.0071142	1	0.71843	1	0.53399	1	0.33687	1	0.72837	1	0.83216	1
7q gain	77 (28%)	201	0.52798	1	0.87321	1	0.54447	1	0.33258	1	0.49632	1	0.022275	1	0.66982	1	0.32606	1	0.18031	1	0.73164	1	1	1
8p gain	42 (15%)	236	0.48078	1	0.71399	1	0.84981	1	0.028894	1	0.13437	1	0.53182	1	0.66408	1	0.13387	1	0.23889	1	0.17951	1	0.16977	1
8q gain	85 (31%)	193	0.53327	1	0.90506	1	0.66167	1	0.30988	1	0.85212	1	0.1585	1	0.67038	1	0.12443	1	0.085333	1	0.18041	1	0.67178	1
9p gain	18 (6%)	260	0.2085	1	0.54539	1	0.26922	1	NA	NA	0.0032275	1	0.7062	1	0.61869	1	0.51833	1	0.63414	1	1	1	1	1
9q gain	27 (10%)	251	0.22347	1	0.42943	1	0.81885	1	0.60153	1	0.52381	1	0.52587	1	0.77253	1	0.26948	1	0.67346	1	0.60546	1	0.50226	1
10p gain	13 (5%)	265	0.63126	1	0.95512	1	0.52416	1	0.85169	1	0.97263	1	0.13073	1	0.13245	1	0.15917	1	0.011284	1	0.38556	1	0.14268	1
10q gain	6 (2%)	272	0.34906	1	0.733	1	1	1	NA	NA	0.99393	1	0.42853	1	0.46258	1	1	1	0.52288	1	0.19896	1	0.12109	1
11p gain	17 (6%)	261	0.96189	1	0.51109	1	0.25502	1	8.7375e-06	0.0074	0.9543	1	0.0012142	1	0.40916	1	1	1	0.5895	1	0.47366	1	0.6936	1
11q gain	19 (7%)	259	0.56866	1	0.95599	1	0.41949	1	0.45237	1	0.93352	1	0.0063968	1	0.24073	1	0.52699	1	0.040377	1	0.51329	1	0.43091	1
12p gain	78 (28%)	200	0.61508	1	0.80374	1	0.02304	1	0.36832	1	0.8809	1	0.05704	1	0.72498	1	0.91766	1	0.67188	1	0.4741	1	0.27367	1
12q gain	36 (13%)	242	0.73253	1	0.64161	1	0.070581	1	0.9582	1	0.97725	1	0.072546	1	0.10843	1	0.25299	1	0.21218	1	1	1	0.23659	1
13q gain	6 (2%)	272	0.11212	1	0.56723	1	1	1	NA	NA	0.99393	1	0.12614	1	1	1	0.45596	1	0.75941	1	1	1	1	1
14q gain	29 (10%)	249	0.092909	1	0.040322	1	0.51318	1	0.93734	1	0.97721	1	0.4389	1	0.89689	1	0.66865	1	1	1	1	1	0.20296	1
15q gain	25 (9%)	253	0.61842	1	0.84985	1	0.81691	1	0.36481	1	0.45834	1	0.6465	1	0.25537	1	0.79947	1	0.2469	1	1	1	0.7333	1
16p gain	16 (6%)	262	0.51635	1	0.31472	1	0.25105	1	0.058436	1	0.88873	1	0.025173	1	0.47302	1	1	1	0.54909	1	1	1	0.38859	1
16q gain	19 (7%)	259	0.8381	1	0.10688	1	0.11416	1	0.30457	1	0.9436	1	0.0072711	1	0.1699	1	0.29606	1	0.13854	1	1	1	1	1
17p gain	6 (2%)	272	0.4438	1	0.48001	1	0.34686	1	NA	NA	2.9257e-09	2.49e-06	0.23288	1	0.55794	1	0.45596	1	0.12598	1	1	1	1	1
17q gain	34 (12%)	244	0.13266	1	0.23805	1	0.038647	1	0.32604	1	0.70262	1	0.66191	1	0.0065854	1	0.34536	1	0.066272	1	0.11001	1	0.54976	1
18p gain	45 (16%)	233	0.065069	1	0.10088	1	0.35717	1	0.57701	1	0.36669	1	0.39049	1	0.057937	1	0.27822	1	0.21896	1	0.66723	1	0.43624	1
18q gain	32 (12%)	246	0.3264	1	0.90964	1	1	1	9.1398e-06	0.00772	0.12238	1	0.55813	1	0.59432	1	0.1667	1	0.90852	1	1	1	0.75687	1
19p gain	30 (11%)	248	0.43078	1	0.46044	1	0.82761	1	7.921e-06	0.00672	1.4383e-05	0.0121	0.82783	1	0.73565	1	0.67303	1	0.68501	1	0.29442	1	1	1
19q gain	42 (15%)	236	0.73105	1	0.83281	1	0.84981	1	0.18348	1	0.0011275	0.945	0.96275	1	0.28073	1	0.13387	1	0.1213	1	0.65081	1	0.40958	1
20p gain	82 (29%)	196	0.84755	1	0.13719	1	0.010995	1	0.18999	1	0.20867	1	0.80804	1	0.46091	1	0.11462	1	0.14728	1	0.16596	1	0.83216	1
20q gain	70 (25%)	208	0.48233	1	0.42444	1	0.1622	1	0.76387	1	0.10899	1	0.9889	1	0.53455	1	0.053084	1	0.13159	1	0.12847	1	0.37065	1
21q gain	15 (5%)	263	0.67547	1	0.99413	1	1	1	0.99644	1	4.0738e-05	0.0343	0.38281	1	0.33366	1	0.41663	1	0.38346	1	0.43114	1	0.012456	1
22q gain	64 (23%)	214	0.032489	1	0.41919	1	0.42032	1	0.67407	1	0.90663	1	0.23085	1	0.9221	1	0.49951	1	0.43063	1	0.70132	1	1	1
Xq gain	8 (3%)	270	0.90085	1	0.36301	1	1	1	9.1398e-06	0.00772	0.98933	1	0.4083	1	1	1	1	1	0.46791	1	1	1	0.19831	1
1p loss	41 (15%)	237	0.67571	1	0.57196	1	0.0070271	1	0.54064	1	0.11878	1	0.42983	1	0.53092	1	0.34936	1	0.43454	1	0.1701	1	1	1
1q loss	7 (3%)	271	0.43478	1	0.013794	1	0.6792	1	NA	NA	0.99179	1	0.092553	1	0.42539	1	0.50914	1	0.4521	1	0.22841	1	1	1
2q loss	8 (3%)	270	0.050939	1	0.068741	1	1	1	NA	NA	0.98933	1	0.56196	1	0.66095	1	1	1	0.61168	1	1	1	0.5907	1
3p loss	120 (43%)	158	0.45016	1	0.052243	1	1	1	0.11619	1	0.40573	1	0.96774	1	0.73156	1	0.76362	1	0.98008	1	0.75002	1	0.17287	1
3q loss	24 (9%)	254	0.16436	1	0.54093	1	0.80998	1	0.74506	1	0.02209	1	0.18953	1	0.077798	1	0.46261	1	0.085554	1	1	1	0.29349	1
4p loss	116 (42%)	162	0.14581	1	0.87979	1	0.89073	1	0.22737	1	0.40495	1	0.67233	1	0.3375	1	0.16429	1	0.18848	1	1	1	0.31991	1
4q loss	99 (36%)	179	0.10206	1	0.54942	1	0.32303	1	0.096842	1	0.23427	1	0.79325	1	0.7418	1	0.074554	1	0.29669	1	0.74773	1	0.153	1
5p loss	17 (6%)	261	0.034071	1	0.41687	1	0.57247	1	0.78687	1	0.0030884	1	0.11155	1	0.52259	1	1	1	0.71684	1	0.47366	1	0.086994	1
5q loss	97 (35%)	181	0.089427	1	0.81665	1	0.67024	1	0.28543	1	0.23277	1	0.048117	1	0.32805	1	0.16843	1	0.035731	1	0.74334	1	0.53724	1
6p loss	28 (10%)	250	0.8371	1	0.49986	1	0.044736	1	0.93858	1	0.017643	1	0.13875	1	0.32214	1	0.8143	1	0.24586	1	0.60552	1	0.51096	1
6q loss	32 (12%)	246	0.73062	1	0.80927	1	1	1	0.69563	1	0.039213	1	0.22096	1	0.22514	1	0.8394	1	0.66619	1	0.61102	1	0.54949	1
7p loss	17 (6%)	261	0.57314	1	0.61239	1	1	1	0.86115	1	0.9543	1	0.65371	1	0.17134	1	1	1	0.65991	1	0.47366	1	1	1
7q loss	9 (3%)	269	0.5841	1	0.72416	1	0.45259	1	NA	NA	0.98658	1	0.22182	1	0.38159	1	1	1	1	1	0.28441	1	0.60434	1
8p loss	80 (29%)	198	0.41949	1	0.31525	1	0.37012	1	0.22143	1	0.87375	1	0.03086	1	0.67222	1	0.39495	1	0.5611	1	0.06757	1	0.66775	1
8q loss	8 (3%)	270	0.69625	1	0.62328	1	1	1	0.4279	1	0.49074	1	0.71536	1	0.76423	1	0.5573	1	0.90648	1	1	1	0.19831	1
9p loss	113 (41%)	165	0.59793	1	0.50063	1	0.16997	1	0.088769	1	0.40218	1	0.76408	1	0.54239	1	0.93757	1	0.53764	1	1	1	0.552	1
9q loss	71 (26%)	207	0.60265	1	0.014127	1	0.4374	1	0.52714	1	0.15594	1	0.2252	1	0.59987	1	0.4587	1	0.77116	1	0.71911	1	0.82283	1
10p loss	58 (21%)	220	0.40781	1	0.79181	1	0.18112	1	0.70759	1	0.33188	1	0.52535	1	0.088624	1	0.59146	1	0.10962	1	0.1282	1	0.46872	1
10q loss	58 (21%)	220	0.36775	1	0.99268	1	0.50493	1	0.70759	1	0.34208	1	0.89949	1	0.71131	1	0.58628	1	0.19188	1	0.1282	1	0.46872	1
11p loss	45 (16%)	233	0.17916	1	0.28033	1	1	1	0.61967	1	0.23221	1	0.77476	1	0.94618	1	0.44338	1	0.82866	1	0.20874	1	0.79446	1
11q loss	25 (9%)	253	0.49034	1	0.045984	1	0.81691	1	0.91453	1	0.90598	1	0.62081	1	0.34629	1	0.60629	1	1	1	0.22379	1	0.08825	1
12p loss	4 (1%)	274	0.49879	1	0.013295	1	0.28868	1	NA	NA	4.0194e-14	3.43e-11	0.52191	1	1	1	0.33251	1	0.55361	1	1	1	0.35803	1
12q loss	3 (1%)	275	NA	NA	0.40956	1	0.17385	1	NA	NA	4.8463e-19	4.14e-16	0.39525	1	0.67829	1	0.26109	1	0.45436	1	1	1	0.28235	1
13q loss	101 (36%)	177	0.12397	1	0.61355	1	0.57433	1	0.13477	1	0.35367	1	0.97231	1	0.19336	1	0.36279	1	0.017106	1	1	1	0.31598	1
14q loss	50 (18%)	228	0.14569	1	0.239	1	0.052428	1	0.31596	1	0.16168	1	0.044029	1	0.23773	1	0.37461	1	0.67477	1	0.39308	1	1	1
15q loss	34 (12%)	244	0.95357	1	0.50708	1	0.14517	1	0.44551	1	0.076966	1	0.10382	1	0.015724	1	0.51669	1	0.0047434	1	1	1	1	1
16p loss	38 (14%)	240	0.095815	1	0.41086	1	1	1	8.7375e-06	0.0074	0.80115	1	0.74006	1	0.55611	1	1	1	0.88881	1	1	1	0.39286	1
16q loss	51 (18%)	227	0.055241	1	0.06421	1	0.226	1	7.921e-06	0.00672	0.67522	1	0.91713	1	0.32421	1	0.14856	1	0.91614	1	0.39792	1	0.61885	1
17p loss	99 (36%)	179	0.53752	1	0.78393	1	0.67196	1	0.030283	1	0.54492	1	0.47009	1	0.13973	1	0.64142	1	0.7795	1	1	1	0.54087	1
17q loss	13 (5%)	265	0.72895	1	0.43251	1	0.34111	1	9.1398e-06	0.00772	0.97263	1	0.15412	1	0.85254	1	0.2446	1	0.069664	1	1	1	0.63277	1
18p loss	30 (11%)	248	0.97164	1	0.91012	1	0.27356	1	0.41612	1	0.86899	1	0.87091	1	0.1497	1	0.36856	1	0.07133	1	0.60729	1	0.75152	1
18q loss	54 (19%)	224	0.83463	1	0.20973	1	0.08543	1	0.38152	1	0.17522	1	0.38419	1	0.95315	1	0.48856	1	0.98194	1	0.2179	1	1	1
19p loss	44 (16%)	234	0.10137	1	0.90784	1	0.71021	1	0.080628	1	0.13484	1	0.28114	1	0.67184	1	0.36526	1	0.33789	1	0.05588	1	0.4262	1
19q loss	30 (11%)	248	0.16994	1	0.29532	1	0.66473	1	0.40523	1	0.0015216	1	0.25084	1	0.55772	1	0.82016	1	0.73504	1	0.29442	1	1	1
20p loss	12 (4%)	266	0.097532	1	0.5457	1	0.52558	1	NA	NA	0.97654	1	0.95244	1	0.26676	1	1	1	0.092651	1	1	1	1	1
20q loss	14 (5%)	264	0.38962	1	0.5418	1	0.36661	1	NA	NA	0.96845	1	0.92549	1	0.40446	1	1	1	0.80526	1	1	1	1	1
21q loss	91 (33%)	187	0.49658	1	0.35607	1	0.0089792	1	0.7473	1	0.54378	1	0.30075	1	0.68013	1	0.23446	1	0.21068	1	0.73327	1	0.40339	1
22q loss	29 (10%)	249	0.60504	1	0.19579	1	0.074521	1	0.27486	1	0.0015086	1	0.42989	1	0.00074313	0.623	0.29932	1	0.0085916	1	0.60614	1	0.52114	1
Xq loss	14 (5%)	264	0.87784	1	0.14257	1	0.53432	1	NA	NA	0.00066966	0.563	0.31302	1	0.12626	1	1	1	0.54437	1	1	1	0.045838	1