Broad GDAC Analyses Status
analyses__2012_09_13__brca_00 Run for Tumor Type: BRCA

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
BRCA91486685508585298050821408507

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PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_Clusters00010
2Aggregate_Gene_Status00010
3CoMut2.000010
4CopyNumber_Clustering_CNMF00010
5CopyNumber_GeneBySample00010
6CopyNumber_Gistic200010
7CopyNumber_Gistic2_Postprocess_Focal00010
8Correlate_Clinical_vs_CopyNumber_Arm00010
9Correlate_Clinical_vs_CopyNumber_Focal00010
10Correlate_Clinical_vs_Methylation00010
11Correlate_Clinical_vs_miR10000
12Correlate_Clinical_vs_miRseq00010
13Correlate_Clinical_vs_Molecular_Signatures00010
14Correlate_Clinical_vs_mRNA00010
15Correlate_Clinical_vs_mRNAseq00010
16Correlate_Clinical_vs_Mutation00010
17Correlate_Clinical_vs_RPPA00010
18Correlate_CopyNumber_vs_miR10000
19Correlate_CopyNumber_vs_mRNA00010
20Correlate_CopyNumber_vs_mRNAseq00010
21Correlate_Methylation_vs_mRNA00010
22GenerateStickFigures2.000010
23GenerateStickFiguresS2N00010
24Methylation_Clustering_CNMF00010
25Methylation_Preprocess00010
26miR_Clustering_CNMF10000
27miR_Clustering_Consensus10000
28miR_FindDirectTargets10000
29miR_Preprocess10000
30miRseq_Clustering_CNMF00010
31miRseq_Clustering_Consensus00010
32miRseq_Preprocess00010
33mRNA_Clustering_CNMF00010
34mRNA_Clustering_Consensus00010
35mRNA_Preprocess_Median00010
36mRNAseq_Clustering_CNMF00010
37mRNAseq_Clustering_Consensus00010
38mRNAseq_Preprocess00010
39Mutation_Assessor00010
40MutSigNozzleReport2.000010
41MutSigNozzleReportS2N00010
42MutSigPreprocess2.000010
43MutSigRun2.000010
44MutSigRunS2N00010
45Pathway_FindEnrichedGenes00010
46Pathway_Paradigm_Expression00010
47Pathway_Paradigm_Expression_CopyNumber00010
48ProcessCoverageForMutSig2.000010
49RPPA_Clustering_CNMF00010
50RPPA_Clustering_Consensus00010
Total600440

This table generated on Mon Oct 29 22:04:42 2012