Broad GDAC Analyses Status
analyses__2012_09_13__thca_00 Run for Tumor Type: THCA
Tumor
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNAseq
miR
miRseq
RPPA
MAF
THCA
412
197
268
81
230
0
158
0
331
224
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_Clusters
0
0
0
1
0
2
Aggregate_Gene_Status
0
0
0
1
0
3
CoMut2.0
1
0
0
0
0
4
CopyNumber_Clustering_CNMF
0
0
0
1
0
5
CopyNumber_GeneBySample
0
0
0
1
0
6
CopyNumber_Gistic2
0
0
0
1
0
7
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
9
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
10
Correlate_Clinical_vs_Methylation
0
0
0
1
0
11
Correlate_Clinical_vs_miR
1
0
0
0
0
12
Correlate_Clinical_vs_miRseq
0
0
0
1
0
13
Correlate_Clinical_vs_Molecular_Signatures
0
0
0
1
0
14
Correlate_Clinical_vs_mRNA
1
0
0
0
0
15
Correlate_Clinical_vs_mRNAseq
0
0
0
1
0
16
Correlate_Clinical_vs_Mutation
1
0
0
0
0
17
Correlate_Clinical_vs_RPPA
0
0
0
1
0
18
Correlate_CopyNumber_vs_miR
1
0
0
0
0
19
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
20
Correlate_CopyNumber_vs_mRNAseq
0
0
0
1
0
21
Correlate_Methylation_vs_mRNA
0
0
0
1
0
22
GenerateStickFigures2.0
1
0
0
0
0
23
GenerateStickFiguresS2N
1
0
0
0
0
24
Methylation_Clustering_CNMF
0
0
0
1
0
25
Methylation_Preprocess
0
0
0
1
0
26
miR_Clustering_CNMF
1
0
0
0
0
27
miR_Clustering_Consensus
1
0
0
0
0
28
miR_FindDirectTargets
1
0
0
0
0
29
miR_Preprocess
1
0
0
0
0
30
miRseq_Clustering_CNMF
0
0
0
1
0
31
miRseq_Clustering_Consensus
0
0
0
1
0
32
miRseq_Preprocess
0
0
0
1
0
33
mRNA_Clustering_CNMF
1
0
0
0
0
34
mRNA_Clustering_Consensus
1
0
0
0
0
35
mRNA_Preprocess_Median
1
0
0
0
0
36
mRNAseq_Clustering_CNMF
0
0
0
1
0
37
mRNAseq_Clustering_Consensus
0
0
0
1
0
38
mRNAseq_Preprocess
0
0
0
1
0
39
Mutation_Assessor
1
0
0
0
0
40
MutSigNozzleReport2.0
1
0
0
0
0
41
MutSigNozzleReportS2N
1
0
0
0
0
42
MutSigPreprocess2.0
1
0
0
0
0
43
MutSigRun2.0
1
0
0
0
0
44
MutSigRunS2N
1
0
0
0
0
45
Pathway_FindEnrichedGenes
1
0
0
0
0
46
Pathway_Paradigm_Expression
1
0
0
0
0
47
Pathway_Paradigm_Expression_CopyNumber
1
0
0
0
0
48
ProcessCoverageForMutSig2.0
1
0
0
0
0
49
RPPA_Clustering_CNMF
0
0
0
1
0
50
RPPA_Clustering_Consensus
0
0
0
1
0
Total
25
0
0
25
0
This table generated on Mon Oct 29 22:04:49 2012