
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/181710/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/BLCA/1708518/1.GDAC_clinicalDataPicker.Finished/BLCA.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=BLCA", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"      "-oT=BLCA"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=69, in cluster file=88, common to both=65
[1] 54 65
[1] "Amp Peak  1(1p34.2) mutation analysis"
[1] 3
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                           16                            49 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                           16                            49 
[1] "Amp Peak  2(1q23.3) mutation analysis"
[1] 3
  AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE 
                           32                            33 
  AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE 
                           32                            33 
[1] "Amp Peak  3(3p25.2) mutation analysis"
[1] 3
  AMP PEAK  3(3P25.2) MUTATED AMP PEAK  3(3P25.2) WILD-TYPE 
                           28                            37 
  AMP PEAK  3(3P25.2) MUTATED AMP PEAK  3(3P25.2) WILD-TYPE 
                           28                            37 
[1] "Amp Peak  4(4p16.3) mutation analysis"
[1] 3
  AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE 
                           15                            50 
  AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE 
                           15                            50 
[1] "Amp Peak  5(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            26                             39 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            26                             39 
[1] "Amp Peak  6(6p22.3) mutation analysis"
[1] 3
  AMP PEAK  6(6P22.3) MUTATED AMP PEAK  6(6P22.3) WILD-TYPE 
                           26                            39 
  AMP PEAK  6(6P22.3) MUTATED AMP PEAK  6(6P22.3) WILD-TYPE 
                           26                            39 
[1] "Amp Peak  7(6q12) mutation analysis"
[1] 3
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                          9                          56 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                          9                          56 
[1] "Amp Peak  8(6q21) mutation analysis"
[1] 3
  AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE 
                          8                          57 
  AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE 
                          8                          57 
[1] "Amp Peak  9(7p11.2) mutation analysis"
[1] 3
  AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE 
                           35                            30 
  AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE 
                           35                            30 
[1] "Amp Peak 10(8p11.23) mutation analysis"
[1] 3
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                            20                             45 
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                            20                             45 
[1] "Amp Peak 11(8q22.2) mutation analysis"
[1] 3
  AMP PEAK 11(8Q22.2) MUTATED AMP PEAK 11(8Q22.2) WILD-TYPE 
                           41                            24 
  AMP PEAK 11(8Q22.2) MUTATED AMP PEAK 11(8Q22.2) WILD-TYPE 
                           41                            24 
[1] "Amp Peak 12(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            41                             24 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            41                             24 
[1] "Amp Peak 13(10p15.1) mutation analysis"
[1] 3
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                            29                             36 
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                            29                             36 
[1] "Amp Peak 14(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                            26                             39 
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                            26                             39 
[1] "Amp Peak 15(12p13.32) mutation analysis"
[1] 3
  AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE 
                             20                              45 
  AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE 
                             20                              45 
[1] "Amp Peak 16(12q15) mutation analysis"
[1] 3
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          26                           39 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          26                           39 
[1] "Amp Peak 17(13q22.1) mutation analysis"
[1] 3
  AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE 
                            21                             44 
  AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE 
                            21                             44 
[1] "Amp Peak 18(16p11.2) mutation analysis"
[1] 3
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                            23                             42 
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                            23                             42 
[1] "Amp Peak 19(17q11.2) mutation analysis"
[1] 3
  AMP PEAK 19(17Q11.2) MUTATED AMP PEAK 19(17Q11.2) WILD-TYPE 
                            30                             35 
  AMP PEAK 19(17Q11.2) MUTATED AMP PEAK 19(17Q11.2) WILD-TYPE 
                            30                             35 
[1] "Amp Peak 20(17q12) mutation analysis"
[1] 3
  AMP PEAK 20(17Q12) MUTATED AMP PEAK 20(17Q12) WILD-TYPE 
                          31                           34 
  AMP PEAK 20(17Q12) MUTATED AMP PEAK 20(17Q12) WILD-TYPE 
                          31                           34 
[1] "Amp Peak 21(19q12) mutation analysis"
[1] 3
  AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE 
                          30                           35 
  AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE 
                          30                           35 
[1] "Amp Peak 22(20q11.21) mutation analysis"
[1] 3
  AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE 
                             46                              19 
  AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE 
                             46                              19 
[1] "Amp Peak 23(22q11.23) mutation analysis"
[1] 3
  AMP PEAK 23(22Q11.23) MUTATED AMP PEAK 23(22Q11.23) WILD-TYPE 
                             18                              47 
  AMP PEAK 23(22Q11.23) MUTATED AMP PEAK 23(22Q11.23) WILD-TYPE 
                             18                              47 
[1] "Del Peak  1(1p36.11) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            11                             54 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            11                             54 
[1] "Del Peak  2(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           19                            46 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           19                            46 
[1] "Del Peak  3(2q34) mutation analysis"
[1] 3
  DEL PEAK  3(2Q34) MUTATED DEL PEAK  3(2Q34) WILD-TYPE 
                         22                          43 
  DEL PEAK  3(2Q34) MUTATED DEL PEAK  3(2Q34) WILD-TYPE 
                         22                          43 
[1] "Del Peak  4(2q37.1) mutation analysis"
[1] 3
  DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE 
                           27                            38 
  DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE 
                           27                            38 
[1] "Del Peak  5(3p21.31) mutation analysis"
[1] 3
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                            24                             41 
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                            24                             41 
[1] "Del Peak  6(3p14.2) mutation analysis"
[1] 3
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           24                            41 
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           24                            41 
[1] "Del Peak  7(3p14.1) mutation analysis"
[1] 3
  DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE 
                           22                            43 
  DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE 
                           22                            43 
[1] "Del Peak  8(3p11.2) mutation analysis"
[1] 3
  DEL PEAK  8(3P11.2) MUTATED DEL PEAK  8(3P11.2) WILD-TYPE 
                           15                            50 
  DEL PEAK  8(3P11.2) MUTATED DEL PEAK  8(3P11.2) WILD-TYPE 
                           15                            50 
[1] "Del Peak  9(4q22.1) mutation analysis"
[1] 3
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                           29                            36 
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                           29                            36 
[1] "Del Peak 10(4q31.21) mutation analysis"
[1] 3
  DEL PEAK 10(4Q31.21) MUTATED DEL PEAK 10(4Q31.21) WILD-TYPE 
                            25                             40 
  DEL PEAK 10(4Q31.21) MUTATED DEL PEAK 10(4Q31.21) WILD-TYPE 
                            25                             40 
[1] "Del Peak 11(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                           27                            38 
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                           27                            38 
[1] "Del Peak 12(6p25.3) mutation analysis"
[1] 3
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           16                            49 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           16                            49 
[1] "Del Peak 13(6q22.31) mutation analysis"
[1] 3
  DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE 
                            25                             40 
  DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE 
                            25                             40 
[1] "Del Peak 14(8p23.1) mutation analysis"
[1] 3
  DEL PEAK 14(8P23.1) MUTATED DEL PEAK 14(8P23.1) WILD-TYPE 
                           31                            34 
  DEL PEAK 14(8P23.1) MUTATED DEL PEAK 14(8P23.1) WILD-TYPE 
                           31                            34 
[1] "Del Peak 15(9p23) mutation analysis"
[1] 3
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                         27                          38 
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                         27                          38 
[1] "Del Peak 16(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                           36                            29 
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                           36                            29 
[1] "Del Peak 17(9q22.33) mutation analysis"
[1] 3
  DEL PEAK 17(9Q22.33) MUTATED DEL PEAK 17(9Q22.33) WILD-TYPE 
                            25                             40 
  DEL PEAK 17(9Q22.33) MUTATED DEL PEAK 17(9Q22.33) WILD-TYPE 
                            25                             40 
[1] "Del Peak 18(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                             27                              38 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                             27                              38 
[1] "Del Peak 19(11p15.4) mutation analysis"
[1] 3
  DEL PEAK 19(11P15.4) MUTATED DEL PEAK 19(11P15.4) WILD-TYPE 
                            34                             31 
  DEL PEAK 19(11P15.4) MUTATED DEL PEAK 19(11P15.4) WILD-TYPE 
                            34                             31 
[1] "Del Peak 20(11q25) mutation analysis"
[1] 3
  DEL PEAK 20(11Q25) MUTATED DEL PEAK 20(11Q25) WILD-TYPE 
                          20                           45 
  DEL PEAK 20(11Q25) MUTATED DEL PEAK 20(11Q25) WILD-TYPE 
                          20                           45 
[1] "Del Peak 21(12p13.2) mutation analysis"
[1] 3
  DEL PEAK 21(12P13.2) MUTATED DEL PEAK 21(12P13.2) WILD-TYPE 
                             5                             60 
  DEL PEAK 21(12P13.2) MUTATED DEL PEAK 21(12P13.2) WILD-TYPE 
                             5                             60 
[1] "Del Peak 22(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE 
                            27                             38 
  DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE 
                            27                             38 
[1] "Del Peak 23(14q32.32) mutation analysis"
[1] 3
  DEL PEAK 23(14Q32.32) MUTATED DEL PEAK 23(14Q32.32) WILD-TYPE 
                             18                              47 
  DEL PEAK 23(14Q32.32) MUTATED DEL PEAK 23(14Q32.32) WILD-TYPE 
                             18                              47 
[1] "Del Peak 24(15q13.1) mutation analysis"
[1] 3
  DEL PEAK 24(15Q13.1) MUTATED DEL PEAK 24(15Q13.1) WILD-TYPE 
                            22                             43 
  DEL PEAK 24(15Q13.1) MUTATED DEL PEAK 24(15Q13.1) WILD-TYPE 
                            22                             43 
[1] "Del Peak 25(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            22                             43 
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            22                             43 
[1] "Del Peak 26(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            15                             50 
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            15                             50 
[1] "Del Peak 27(17p12) mutation analysis"
[1] 3
  DEL PEAK 27(17P12) MUTATED DEL PEAK 27(17P12) WILD-TYPE 
                          34                           31 
  DEL PEAK 27(17P12) MUTATED DEL PEAK 27(17P12) WILD-TYPE 
                          34                           31 
[1] "Del Peak 28(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE 
                            27                             38 
  DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE 
                            27                             38 
[1] "Del Peak 29(22q13.32) mutation analysis"
[1] 3
  DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE 
                             24                              41 
  DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE 
                             24                              41 
[1] "Del Peak 30(Xq21.33) mutation analysis"
[1] 3
  DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE 
                            16                             49 
  DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE 
                            16                             49 
[1] "Del Peak 31(Xq23) mutation analysis"
[1] 3
  DEL PEAK 31(XQ23) MUTATED DEL PEAK 31(XQ23) WILD-TYPE 
                         15                          50 
  DEL PEAK 31(XQ23) MUTATED DEL PEAK 31(XQ23) WILD-TYPE 
                         15                          50 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "NEOADJUVANTTHERAPY"                    
[13] "BATCHNUMBER"                           

Input Data has 13 rows and 65 columns.

[1] "Batch" "13"   
[1] "Last Follow UP"
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
         389           NA           NA           NA           NA          363 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
          NA           NA           NA           NA           NA           NA 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-C4-A0EZ 
          NA           NA           NA           NA           NA           NA 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
          59           61           14           13           21           NA 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
          NA          219           77           NA          955          273 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
         214          271         3616         3056          218          178 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IS 
         202           55          322           NA         2291         1151 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        1108          268          253           NA          209           NA 
TCGA-FD-A3B8 TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
         336           71         1497          806          172           NA 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 
         684          525          214           NA           68          234 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-H4-A2HO TCGA-H4-A2HQ 
         160          187          160           46          204 
Variable 1:'AGE':	nDistinctValues=34,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=23,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'BATCH.NUMBER':	nDistinctValues=17,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "GENDER"                     
[3] "KARNOFSKY.PERFORMANCE.SCORE"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 65 columns, 1 survival variables, and 3 non-survival variables.
AGE, nv=34, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=5, binary=FALSE, numeric=TRUE

Clustering(1) Variable = Amp Peak  1(1p34.2) mutation analysis
D1V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" 
[1] "hr=" "1.7"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P34.2) MUTATED      9    7
  AMP PEAK  1(1P34.2) WILD-TYPE   34   15
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  FEMALE                           7                            15
  MALE                             9                            34
D1V4, continuous

Clustering(2) Variable = Amp Peak  2(1q23.3) mutation analysis
D2V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-H4-A2HQ 
  "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-H4-A2HQ 
  "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-H4-A2HQ 
  "AMP PEAK  2(1Q23.3) MUTATED" 
[1] "hr=" "1.3"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q23.3) MUTATED     21   11
  AMP PEAK  2(1Q23.3) WILD-TYPE   22   11
        clus
vv       AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE
  FEMALE                          11                            11
  MALE                            21                            22
D2V4, continuous

Clustering(3) Variable = Amp Peak  3(3p25.2) mutation analysis
D3V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-H4-A2HQ 
"AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-H4-A2HQ 
"AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-H4-A2HQ 
"AMP PEAK  3(3P25.2) WILD-TYPE" 
[1] "hr=" "2.3"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(3P25.2) MUTATED     23    5
  AMP PEAK  3(3P25.2) WILD-TYPE   20   17
        clus
vv       AMP PEAK  3(3P25.2) MUTATED AMP PEAK  3(3P25.2) WILD-TYPE
  FEMALE                           5                            17
  MALE                            23                            20
D3V4, continuous

Clustering(4) Variable = Amp Peak  4(4p16.3) mutation analysis
D4V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-H4-A2HQ 
"AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-H4-A2HQ 
"AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-H4-A2HQ 
"AMP PEAK  4(4P16.3) WILD-TYPE" 
[1] "hr=" "2.4"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(4P16.3) MUTATED     12    3
  AMP PEAK  4(4P16.3) WILD-TYPE   31   19
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  FEMALE                           3                            19
  MALE                            12                            31
D4V4, continuous

Clustering(5) Variable = Amp Peak  5(5p15.33) mutation analysis
D5V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK  5(5P15.33) MUTATED" 
[1] "hr=" "1.1"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(5P15.33) MUTATED     17    9
  AMP PEAK  5(5P15.33) WILD-TYPE   26   13
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  FEMALE                            9                             13
  MALE                             17                             26
D5V4, continuous

Clustering(6) Variable = Amp Peak  6(6p22.3) mutation analysis
D6V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  6(6P22.3) WILD-TYPE"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  6(6P22.3) WILD-TYPE" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "AMP PEAK  6(6P22.3) MUTATED"   "AMP PEAK  6(6P22.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK  6(6P22.3) MUTATED" "AMP PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  6(6P22.3) WILD-TYPE" 
[1] "hr=" "1.5"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(6P22.3) MUTATED     16   10
  AMP PEAK  6(6P22.3) WILD-TYPE   27   12
        clus
vv       AMP PEAK  6(6P22.3) MUTATED AMP PEAK  6(6P22.3) WILD-TYPE
  FEMALE                          10                            12
  MALE                            16                            27
D6V4, continuous

Clustering(7) Variable = Amp Peak  7(6q12) mutation analysis
D7V1, survival
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"AMP PEAK  7(6Q12) WILD-TYPE" 
[1] "hr=" "2.2"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(6Q12) MUTATED      7    2
  AMP PEAK  7(6Q12) WILD-TYPE   36   20
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  FEMALE                         2                          20
  MALE                           7                          36
D7V4, continuous
[1] "Remove cluster labels:"    "AMP PEAK  7(6Q12) MUTATED"
clus
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                          1                          15 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DK-A2HX                  TCGA-E5-A2PC 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GV-A3JX 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-GV-A3JZ 
"AMP PEAK  7(6Q12) WILD-TYPE" 

Clustering(8) Variable = Amp Peak  8(6q21) mutation analysis
D8V1, survival
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
  "AMP PEAK  8(6Q21) MUTATED" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "AMP PEAK  8(6Q21) MUTATED" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
"AMP PEAK  8(6Q21) WILD-TYPE"   "AMP PEAK  8(6Q21) MUTATED" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
"AMP PEAK  8(6Q21) WILD-TYPE"   "AMP PEAK  8(6Q21) MUTATED" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "AMP PEAK  8(6Q21) MUTATED" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"AMP PEAK  8(6Q21) WILD-TYPE"   "AMP PEAK  8(6Q21) MUTATED" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "AMP PEAK  8(6Q21) MUTATED" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"AMP PEAK  8(6Q21) WILD-TYPE"   "AMP PEAK  8(6Q21) MUTATED" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
  "AMP PEAK  8(6Q21) MUTATED" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "AMP PEAK  8(6Q21) MUTATED" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
"AMP PEAK  8(6Q21) WILD-TYPE"   "AMP PEAK  8(6Q21) MUTATED" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
"AMP PEAK  8(6Q21) WILD-TYPE"   "AMP PEAK  8(6Q21) MUTATED" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "AMP PEAK  8(6Q21) MUTATED" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"AMP PEAK  8(6Q21) WILD-TYPE"   "AMP PEAK  8(6Q21) MUTATED" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "AMP PEAK  8(6Q21) MUTATED" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"AMP PEAK  8(6Q21) WILD-TYPE"   "AMP PEAK  8(6Q21) MUTATED" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
  "AMP PEAK  8(6Q21) MUTATED" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "AMP PEAK  8(6Q21) MUTATED" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
"AMP PEAK  8(6Q21) WILD-TYPE"   "AMP PEAK  8(6Q21) MUTATED" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
"AMP PEAK  8(6Q21) WILD-TYPE"   "AMP PEAK  8(6Q21) MUTATED" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "AMP PEAK  8(6Q21) MUTATED" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"AMP PEAK  8(6Q21) WILD-TYPE"   "AMP PEAK  8(6Q21) MUTATED" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "AMP PEAK  8(6Q21) MUTATED" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"AMP PEAK  8(6Q21) WILD-TYPE"   "AMP PEAK  8(6Q21) MUTATED" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"AMP PEAK  8(6Q21) WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q21) MUTATED      5    3
  AMP PEAK  8(6Q21) WILD-TYPE   38   19
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  FEMALE                         3                          19
  MALE                           5                          38
D8V4, continuous
[1] "Remove cluster labels:"    "AMP PEAK  8(6Q21) MUTATED"
clus
  AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE 
                          1                          15 
                 TCGA-CF-A27C                  TCGA-DK-A2HX 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-G2-A2EF 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EJ                  TCGA-G2-A2EK 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EL                  TCGA-G2-A2EO 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A2ES                  TCGA-G2-A3IB 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-G2-A3IE                  TCGA-GC-A3I6 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JZ 
"AMP PEAK  8(6Q21) WILD-TYPE" 

Clustering(9) Variable = Amp Peak  9(7p11.2) mutation analysis
D9V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK  9(7P11.2) WILD-TYPE"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  9(7P11.2) WILD-TYPE" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "AMP PEAK  9(7P11.2) MUTATED"   "AMP PEAK  9(7P11.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK  9(7P11.2) MUTATED" "AMP PEAK  9(7P11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "AMP PEAK  9(7P11.2) MUTATED" 
[1] "hr=" "1.2"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(7P11.2) MUTATED     23   12
  AMP PEAK  9(7P11.2) WILD-TYPE   20   10
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  FEMALE                          12                            10
  MALE                            23                            20
D9V4, continuous

Clustering(10) Variable = Amp Peak 10(8p11.23) mutation analysis
D10V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 10(8P11.23) MUTATED"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 10(8P11.23) MUTATED" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "AMP PEAK 10(8P11.23) MUTATED" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 10(8P11.23) MUTATED" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 10(8P11.23) MUTATED"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 10(8P11.23) MUTATED" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK 10(8P11.23) MUTATED"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 10(8P11.23) MUTATED"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 10(8P11.23) MUTATED"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 10(8P11.23) MUTATED" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "AMP PEAK 10(8P11.23) MUTATED" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 10(8P11.23) MUTATED" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 10(8P11.23) MUTATED"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 10(8P11.23) MUTATED" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK 10(8P11.23) MUTATED"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 10(8P11.23) MUTATED"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 10(8P11.23) MUTATED"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 10(8P11.23) MUTATED" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "AMP PEAK 10(8P11.23) MUTATED" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 10(8P11.23) MUTATED" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 10(8P11.23) MUTATED"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 10(8P11.23) MUTATED" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 10(8P11.23) WILD-TYPE"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK 10(8P11.23) MUTATED"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 10(8P11.23) MUTATED"   "AMP PEAK 10(8P11.23) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"AMP PEAK 10(8P11.23) WILD-TYPE" "AMP PEAK 10(8P11.23) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 10(8P11.23) WILD-TYPE" 
[1] "hr=" "1.2"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8P11.23) MUTATED     14    6
  AMP PEAK 10(8P11.23) WILD-TYPE   29   16
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  FEMALE                            6                             16
  MALE                             14                             29
D10V4, continuous

Clustering(11) Variable = Amp Peak 11(8q22.2) mutation analysis
D11V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-H4-A2HQ 
  "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-H4-A2HQ 
  "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK 11(8Q22.2) WILD-TYPE" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK 11(8Q22.2) WILD-TYPE"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "AMP PEAK 11(8Q22.2) MUTATED" "AMP PEAK 11(8Q22.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "AMP PEAK 11(8Q22.2) MUTATED"   "AMP PEAK 11(8Q22.2) MUTATED" 
                   TCGA-H4-A2HQ 
  "AMP PEAK 11(8Q22.2) MUTATED" 
[1] "hr=" "1.3"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(8Q22.2) MUTATED     32    9
  AMP PEAK 11(8Q22.2) WILD-TYPE   11   13
        clus
vv       AMP PEAK 11(8Q22.2) MUTATED AMP PEAK 11(8Q22.2) WILD-TYPE
  FEMALE                           9                            13
  MALE                            32                            11
D11V4, continuous

Clustering(12) Variable = Amp Peak 12(8q24.21) mutation analysis
D12V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 12(8Q24.21) MUTATED" 
[1] "hr=" "2"  
D12V2, continuous
D12V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(8Q24.21) MUTATED     31   10
  AMP PEAK 12(8Q24.21) WILD-TYPE   12   12
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  FEMALE                           10                             12
  MALE                             31                             12
D12V4, continuous

Clustering(13) Variable = Amp Peak 13(10p15.1) mutation analysis
D13V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 13(10P15.1) MUTATED"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"AMP PEAK 13(10P15.1) WILD-TYPE"   "AMP PEAK 13(10P15.1) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 13(10P15.1) MUTATED" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"AMP PEAK 13(10P15.1) WILD-TYPE" "AMP PEAK 13(10P15.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 13(10P15.1) WILD-TYPE" 
[1] "hr=" "1"  
D13V2, continuous
D13V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(10P15.1) MUTATED     19   10
  AMP PEAK 13(10P15.1) WILD-TYPE   24   12
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  FEMALE                           10                             12
  MALE                             19                             24
D13V4, continuous

Clustering(14) Variable = Amp Peak 14(11q13.3) mutation analysis
D14V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 14(11Q13.3) WILD-TYPE" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 14(11Q13.3) WILD-TYPE"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK 14(11Q13.3) MUTATED"   "AMP PEAK 14(11Q13.3) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 14(11Q13.3) MUTATED" "AMP PEAK 14(11Q13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 14(11Q13.3) MUTATED" 
[1] "hr=" "1.1"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(11Q13.3) MUTATED     18    8
  AMP PEAK 14(11Q13.3) WILD-TYPE   25   14
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  FEMALE                            8                             14
  MALE                             18                             25
D14V4, continuous

Clustering(15) Variable = Amp Peak 15(12p13.32) mutation analysis
D15V1, survival
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "AMP PEAK 15(12P13.32) MUTATED"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "AMP PEAK 15(12P13.32) MUTATED"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
  "AMP PEAK 15(12P13.32) MUTATED"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-H4-A2HQ 
"AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "AMP PEAK 15(12P13.32) MUTATED"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "AMP PEAK 15(12P13.32) MUTATED"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
  "AMP PEAK 15(12P13.32) MUTATED"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-H4-A2HQ 
"AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "AMP PEAK 15(12P13.32) MUTATED"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "AMP PEAK 15(12P13.32) MUTATED"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
  "AMP PEAK 15(12P13.32) MUTATED"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"AMP PEAK 15(12P13.32) WILD-TYPE"   "AMP PEAK 15(12P13.32) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 15(12P13.32) WILD-TYPE" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "AMP PEAK 15(12P13.32) MUTATED" "AMP PEAK 15(12P13.32) WILD-TYPE" 
                     TCGA-H4-A2HQ 
"AMP PEAK 15(12P13.32) WILD-TYPE" 
[1] "hr=" "1.2"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 15(12P13.32) MUTATED     17    3
  AMP PEAK 15(12P13.32) WILD-TYPE   26   19
        clus
vv       AMP PEAK 15(12P13.32) MUTATED AMP PEAK 15(12P13.32) WILD-TYPE
  FEMALE                             3                              19
  MALE                              17                              26
D15V4, continuous

Clustering(16) Variable = Amp Peak 16(12q15) mutation analysis
D16V1, survival
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 16(12Q15) MUTATED" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 16(12Q15) MUTATED     20    6
  AMP PEAK 16(12Q15) WILD-TYPE   23   16
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  FEMALE                          6                           16
  MALE                           20                           23
D16V4, continuous

Clustering(17) Variable = Amp Peak 17(13q22.1) mutation analysis
D17V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK 17(13Q22.1) MUTATED"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "AMP PEAK 17(13Q22.1) MUTATED"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 17(13Q22.1) MUTATED"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK 17(13Q22.1) MUTATED"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "AMP PEAK 17(13Q22.1) MUTATED"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 17(13Q22.1) MUTATED"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK 17(13Q22.1) MUTATED"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "AMP PEAK 17(13Q22.1) MUTATED"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 17(13Q22.1) MUTATED"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"AMP PEAK 17(13Q22.1) WILD-TYPE" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"AMP PEAK 17(13Q22.1) WILD-TYPE"   "AMP PEAK 17(13Q22.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 17(13Q22.1) MUTATED" "AMP PEAK 17(13Q22.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 17(13Q22.1) WILD-TYPE" 
[1] "hr=" "1.2"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(13Q22.1) MUTATED     17    4
  AMP PEAK 17(13Q22.1) WILD-TYPE   26   18
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  FEMALE                            4                             18
  MALE                             17                             26
D17V4, continuous

Clustering(18) Variable = Amp Peak 18(16p11.2) mutation analysis
D18V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 18(16P11.2) MUTATED" 
[1] "hr=" "1.1"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(16P11.2) MUTATED     13   10
  AMP PEAK 18(16P11.2) WILD-TYPE   30   12
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  FEMALE                           10                             12
  MALE                             13                             30
D18V4, continuous

Clustering(19) Variable = Amp Peak 19(17q11.2) mutation analysis
D19V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 19(17Q11.2) MUTATED"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 19(17Q11.2) WILD-TYPE" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"AMP PEAK 19(17Q11.2) WILD-TYPE"   "AMP PEAK 19(17Q11.2) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "AMP PEAK 19(17Q11.2) MUTATED" "AMP PEAK 19(17Q11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 19(17Q11.2) MUTATED" 
[1] "hr=" "1.2"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q11.2) MUTATED     19   11
  AMP PEAK 19(17Q11.2) WILD-TYPE   24   11
        clus
vv       AMP PEAK 19(17Q11.2) MUTATED AMP PEAK 19(17Q11.2) WILD-TYPE
  FEMALE                           11                             11
  MALE                             19                             24
D19V4, continuous

Clustering(20) Variable = Amp Peak 20(17q12) mutation analysis
D20V1, survival
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 20(17Q12) MUTATED" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
  "AMP PEAK 20(17Q12) MUTATED" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
  "AMP PEAK 20(17Q12) MUTATED" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "AMP PEAK 20(17Q12) MUTATED" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 20(17Q12) MUTATED" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
  "AMP PEAK 20(17Q12) MUTATED" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
  "AMP PEAK 20(17Q12) MUTATED" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "AMP PEAK 20(17Q12) MUTATED" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 20(17Q12) MUTATED" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
  "AMP PEAK 20(17Q12) MUTATED" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
  "AMP PEAK 20(17Q12) MUTATED" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "AMP PEAK 20(17Q12) MUTATED" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 20(17Q12) WILD-TYPE"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
  "AMP PEAK 20(17Q12) MUTATED"   "AMP PEAK 20(17Q12) MUTATED" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 20(17Q12) MUTATED" 
[1] "hr=" "1.9"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 20(17Q12) MUTATED     21   10
  AMP PEAK 20(17Q12) WILD-TYPE   22   12
        clus
vv       AMP PEAK 20(17Q12) MUTATED AMP PEAK 20(17Q12) WILD-TYPE
  FEMALE                         10                           12
  MALE                           21                           22
D20V4, continuous

Clustering(21) Variable = Amp Peak 21(19q12) mutation analysis
D21V1, survival
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
  "AMP PEAK 21(19Q12) MUTATED"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 21(19Q12) WILD-TYPE" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
"AMP PEAK 21(19Q12) WILD-TYPE"   "AMP PEAK 21(19Q12) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
  "AMP PEAK 21(19Q12) MUTATED" "AMP PEAK 21(19Q12) WILD-TYPE" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 21(19Q12) MUTATED" 
[1] "hr=" "1.6"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 21(19Q12) MUTATED     19   11
  AMP PEAK 21(19Q12) WILD-TYPE   24   11
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  FEMALE                         11                           11
  MALE                           19                           24
D21V4, continuous

Clustering(22) Variable = Amp Peak 22(20q11.21) mutation analysis
D22V1, survival
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 22(20Q11.21) WILD-TYPE" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 22(20Q11.21) WILD-TYPE" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 22(20Q11.21) WILD-TYPE" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 22(20Q11.21) WILD-TYPE" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-H4-A2HQ 
  "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 22(20Q11.21) WILD-TYPE" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 22(20Q11.21) WILD-TYPE" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 22(20Q11.21) WILD-TYPE" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 22(20Q11.21) WILD-TYPE" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-H4-A2HQ 
  "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 22(20Q11.21) WILD-TYPE" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 22(20Q11.21) WILD-TYPE" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 22(20Q11.21) WILD-TYPE" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"AMP PEAK 22(20Q11.21) WILD-TYPE"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 22(20Q11.21) WILD-TYPE" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "AMP PEAK 22(20Q11.21) MUTATED"   "AMP PEAK 22(20Q11.21) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "AMP PEAK 22(20Q11.21) MUTATED" "AMP PEAK 22(20Q11.21) WILD-TYPE" 
                     TCGA-H4-A2HQ 
  "AMP PEAK 22(20Q11.21) MUTATED" 
[1] "hr=" "1"  
D22V2, continuous
D22V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(20Q11.21) MUTATED     30   16
  AMP PEAK 22(20Q11.21) WILD-TYPE   13    6
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  FEMALE                            16                               6
  MALE                              30                              13
D22V4, continuous

Clustering(23) Variable = Amp Peak 23(22q11.23) mutation analysis
D23V1, survival
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
  "AMP PEAK 23(22Q11.23) MUTATED"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 23(22Q11.23) MUTATED"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 23(22Q11.23) MUTATED"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
  "AMP PEAK 23(22Q11.23) MUTATED"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-H4-A2HQ 
"AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
  "AMP PEAK 23(22Q11.23) MUTATED"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 23(22Q11.23) MUTATED"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 23(22Q11.23) MUTATED"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
  "AMP PEAK 23(22Q11.23) MUTATED"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-H4-A2HQ 
"AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
  "AMP PEAK 23(22Q11.23) MUTATED"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 23(22Q11.23) MUTATED"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 23(22Q11.23) MUTATED"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 23(22Q11.23) WILD-TYPE"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
  "AMP PEAK 23(22Q11.23) MUTATED"   "AMP PEAK 23(22Q11.23) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"AMP PEAK 23(22Q11.23) WILD-TYPE" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "AMP PEAK 23(22Q11.23) MUTATED" "AMP PEAK 23(22Q11.23) WILD-TYPE" 
                     TCGA-H4-A2HQ 
"AMP PEAK 23(22Q11.23) WILD-TYPE" 
[1] "hr=" "3.3"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(22Q11.23) MUTATED     16    2
  AMP PEAK 23(22Q11.23) WILD-TYPE   27   20
        clus
vv       AMP PEAK 23(22Q11.23) MUTATED AMP PEAK 23(22Q11.23) WILD-TYPE
  FEMALE                             2                              20
  MALE                              16                              27
D23V4, continuous

Clustering(24) Variable = Del Peak  1(1p36.11) mutation analysis
D24V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK  1(1P36.11) WILD-TYPE" 
[1] "hr=" "1.5"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED      8    3
  DEL PEAK  1(1P36.11) WILD-TYPE   35   19
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  FEMALE                            3                             19
  MALE                              8                             35
D24V4, continuous

Clustering(25) Variable = Del Peak  2(2q22.1) mutation analysis
D25V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  2(2Q22.1) MUTATED"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  2(2Q22.1) MUTATED"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  2(2Q22.1) MUTATED"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  2(2Q22.1) MUTATED"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  2(2Q22.1) MUTATED"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  2(2Q22.1) MUTATED"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" 
[1] "hr=" "1.1"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) MUTATED     10    9
  DEL PEAK  2(2Q22.1) WILD-TYPE   33   13
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  FEMALE                           9                            13
  MALE                            10                            33
D25V4, continuous

Clustering(26) Variable = Del Peak  3(2q34) mutation analysis
D26V1, survival
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
  "DEL PEAK  3(2Q34) MUTATED" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK  3(2Q34) MUTATED" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
  "DEL PEAK  3(2Q34) MUTATED" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK  3(2Q34) MUTATED" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
  "DEL PEAK  3(2Q34) MUTATED" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK  3(2Q34) MUTATED" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
  "DEL PEAK  3(2Q34) MUTATED" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK  3(2Q34) MUTATED" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
  "DEL PEAK  3(2Q34) MUTATED" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK  3(2Q34) MUTATED" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
"DEL PEAK  3(2Q34) WILD-TYPE"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
  "DEL PEAK  3(2Q34) MUTATED" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
  "DEL PEAK  3(2Q34) MUTATED"   "DEL PEAK  3(2Q34) MUTATED" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK  3(2Q34) MUTATED" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"DEL PEAK  3(2Q34) WILD-TYPE" "DEL PEAK  3(2Q34) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"DEL PEAK  3(2Q34) WILD-TYPE" 
[1] "hr=" "1.4"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(2Q34) MUTATED     15    7
  DEL PEAK  3(2Q34) WILD-TYPE   28   15
        clus
vv       DEL PEAK  3(2Q34) MUTATED DEL PEAK  3(2Q34) WILD-TYPE
  FEMALE                         7                          15
  MALE                          15                          28
D26V4, continuous

Clustering(27) Variable = Del Peak  4(2q37.1) mutation analysis
D27V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  4(2Q37.1) WILD-TYPE"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  4(2Q37.1) WILD-TYPE"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  4(2Q37.1) WILD-TYPE"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  4(2Q37.1) WILD-TYPE"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  4(2Q37.1) WILD-TYPE"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  4(2Q37.1) WILD-TYPE"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  4(2Q37.1) WILD-TYPE"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  4(2Q37.1) WILD-TYPE"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  4(2Q37.1) WILD-TYPE"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  4(2Q37.1) WILD-TYPE"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  4(2Q37.1) WILD-TYPE"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  4(2Q37.1) WILD-TYPE"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  4(2Q37.1) MUTATED" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  4(2Q37.1) MUTATED"   "DEL PEAK  4(2Q37.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  4(2Q37.1) WILD-TYPE" 
[1] "hr=" "1.3"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q37.1) MUTATED     21    6
  DEL PEAK  4(2Q37.1) WILD-TYPE   22   16
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  FEMALE                           6                            16
  MALE                            21                            22
D27V4, continuous

Clustering(28) Variable = Del Peak  5(3p21.31) mutation analysis
D28V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "DEL PEAK  5(3P21.31) MUTATED"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK  5(3P21.31) MUTATED"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "DEL PEAK  5(3P21.31) MUTATED"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK  5(3P21.31) MUTATED"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "DEL PEAK  5(3P21.31) MUTATED"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK  5(3P21.31) MUTATED"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  5(3P21.31) WILD-TYPE"   "DEL PEAK  5(3P21.31) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK  5(3P21.31) MUTATED" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK  5(3P21.31) MUTATED" 
[1] "hr=" "1"  
D28V2, continuous
D28V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  5(3P21.31) MUTATED     15    9
  DEL PEAK  5(3P21.31) WILD-TYPE   28   13
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  FEMALE                            9                             13
  MALE                             15                             28
D28V4, continuous

Clustering(29) Variable = Del Peak  6(3p14.2) mutation analysis
D29V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  6(3P14.2) MUTATED"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK  6(3P14.2) MUTATED"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  6(3P14.2) MUTATED"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  6(3P14.2) MUTATED"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  6(3P14.2) MUTATED"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK  6(3P14.2) MUTATED"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  6(3P14.2) MUTATED"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  6(3P14.2) MUTATED"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  6(3P14.2) MUTATED"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK  6(3P14.2) MUTATED"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  6(3P14.2) MUTATED"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  6(3P14.2) WILD-TYPE"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  6(3P14.2) MUTATED"   "DEL PEAK  6(3P14.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  6(3P14.2) MUTATED" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK  6(3P14.2) WILD-TYPE" "DEL PEAK  6(3P14.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  6(3P14.2) MUTATED" 
[1] "hr=" "1.5"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3P14.2) MUTATED     15    9
  DEL PEAK  6(3P14.2) WILD-TYPE   28   13
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  FEMALE                           9                            13
  MALE                            15                            28
D29V4, continuous

Clustering(30) Variable = Del Peak  7(3p14.1) mutation analysis
D30V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  7(3P14.1) MUTATED"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK  7(3P14.1) MUTATED"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  7(3P14.1) MUTATED"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  7(3P14.1) MUTATED"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK  7(3P14.1) MUTATED"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  7(3P14.1) MUTATED"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  7(3P14.1) MUTATED"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK  7(3P14.1) MUTATED"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  7(3P14.1) WILD-TYPE"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  7(3P14.1) MUTATED"   "DEL PEAK  7(3P14.1) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  7(3P14.1) MUTATED" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK  7(3P14.1) WILD-TYPE" "DEL PEAK  7(3P14.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  7(3P14.1) MUTATED" 
[1] "hr=" "1.2"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P14.1) MUTATED     14    8
  DEL PEAK  7(3P14.1) WILD-TYPE   29   14
        clus
vv       DEL PEAK  7(3P14.1) MUTATED DEL PEAK  7(3P14.1) WILD-TYPE
  FEMALE                           8                            14
  MALE                            14                            29
D30V4, continuous

Clustering(31) Variable = Del Peak  8(3p11.2) mutation analysis
D31V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK  8(3P11.2) WILD-TYPE"   "DEL PEAK  8(3P11.2) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK  8(3P11.2) WILD-TYPE" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "DEL PEAK  8(3P11.2) MUTATED" "DEL PEAK  8(3P11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  8(3P11.2) MUTATED" 
[1] "hr=" "2"  
D31V2, continuous
D31V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(3P11.2) MUTATED      7    8
  DEL PEAK  8(3P11.2) WILD-TYPE   36   14
        clus
vv       DEL PEAK  8(3P11.2) MUTATED DEL PEAK  8(3P11.2) WILD-TYPE
  FEMALE                           8                            14
  MALE                             7                            36
D31V4, continuous

Clustering(32) Variable = Del Peak  9(4q22.1) mutation analysis
D32V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  9(4Q22.1) MUTATED" 
[1] "hr=" "1.3"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q22.1) MUTATED     15   14
  DEL PEAK  9(4Q22.1) WILD-TYPE   28    8
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  FEMALE                          14                             8
  MALE                            15                            28
D32V4, continuous

Clustering(33) Variable = Del Peak 10(4q31.21) mutation analysis
D33V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 10(4Q31.21) MUTATED"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
  "DEL PEAK 10(4Q31.21) MUTATED"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
  "DEL PEAK 10(4Q31.21) MUTATED"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 10(4Q31.21) MUTATED"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 10(4Q31.21) MUTATED"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
  "DEL PEAK 10(4Q31.21) MUTATED"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
  "DEL PEAK 10(4Q31.21) MUTATED"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 10(4Q31.21) MUTATED"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 10(4Q31.21) MUTATED"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
  "DEL PEAK 10(4Q31.21) MUTATED"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
  "DEL PEAK 10(4Q31.21) MUTATED"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 10(4Q31.21) MUTATED"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 10(4Q31.21) WILD-TYPE"   "DEL PEAK 10(4Q31.21) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 10(4Q31.21) MUTATED" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 10(4Q31.21) WILD-TYPE" "DEL PEAK 10(4Q31.21) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 10(4Q31.21) MUTATED" 
[1] "hr=" "1.5"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(4Q31.21) MUTATED     16    9
  DEL PEAK 10(4Q31.21) WILD-TYPE   27   13
        clus
vv       DEL PEAK 10(4Q31.21) MUTATED DEL PEAK 10(4Q31.21) WILD-TYPE
  FEMALE                            9                             13
  MALE                             16                             27
D33V4, continuous

Clustering(34) Variable = Del Peak 11(5q11.2) mutation analysis
D34V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 11(5Q11.2) MUTATED" 
[1] "hr=" "1.4"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q11.2) MUTATED     18    9
  DEL PEAK 11(5Q11.2) WILD-TYPE   25   13
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  FEMALE                           9                            13
  MALE                            18                            25
D34V4, continuous

Clustering(35) Variable = Del Peak 12(6p25.3) mutation analysis
D35V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 12(6P25.3) MUTATED" 
[1] "hr=" "1.4"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) MUTATED      9    7
  DEL PEAK 12(6P25.3) WILD-TYPE   34   15
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  FEMALE                           7                            15
  MALE                             9                            34
D35V4, continuous

Clustering(36) Variable = Del Peak 13(6q22.31) mutation analysis
D36V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 13(6Q22.31) WILD-TYPE" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 13(6Q22.31) WILD-TYPE"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 13(6Q22.31) MUTATED"   "DEL PEAK 13(6Q22.31) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "DEL PEAK 13(6Q22.31) MUTATED" "DEL PEAK 13(6Q22.31) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 13(6Q22.31) MUTATED" 
[1] "hr=" "2.1"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(6Q22.31) MUTATED     16    9
  DEL PEAK 13(6Q22.31) WILD-TYPE   27   13
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  FEMALE                            9                             13
  MALE                             16                             27
D36V4, continuous

Clustering(37) Variable = Del Peak 14(8p23.1) mutation analysis
D37V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 14(8P23.1) MUTATED"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 14(8P23.1) WILD-TYPE" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 14(8P23.1) WILD-TYPE"   "DEL PEAK 14(8P23.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
  "DEL PEAK 14(8P23.1) MUTATED" "DEL PEAK 14(8P23.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 14(8P23.1) MUTATED" 
[1] "hr=" "1.1"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(8P23.1) MUTATED     22    9
  DEL PEAK 14(8P23.1) WILD-TYPE   21   13
        clus
vv       DEL PEAK 14(8P23.1) MUTATED DEL PEAK 14(8P23.1) WILD-TYPE
  FEMALE                           9                            13
  MALE                            22                            21
D37V4, continuous

Clustering(38) Variable = Del Peak 15(9p23) mutation analysis
D38V1, survival
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "DEL PEAK 15(9P23) MUTATED"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
  "DEL PEAK 15(9P23) MUTATED"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK 15(9P23) MUTATED"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-H4-A2HQ 
  "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "DEL PEAK 15(9P23) MUTATED"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
  "DEL PEAK 15(9P23) MUTATED"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK 15(9P23) MUTATED"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-H4-A2HQ 
  "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "DEL PEAK 15(9P23) MUTATED"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
  "DEL PEAK 15(9P23) MUTATED"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK 15(9P23) MUTATED"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 15(9P23) WILD-TYPE"   "DEL PEAK 15(9P23) MUTATED" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK 15(9P23) MUTATED" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"DEL PEAK 15(9P23) WILD-TYPE" "DEL PEAK 15(9P23) WILD-TYPE" 
                 TCGA-H4-A2HQ 
  "DEL PEAK 15(9P23) MUTATED" 
[1] "hr=" "1.6"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 15(9P23) MUTATED     19    8
  DEL PEAK 15(9P23) WILD-TYPE   24   14
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  FEMALE                         8                          14
  MALE                          19                          24
D38V4, continuous

Clustering(39) Variable = Del Peak 16(9p21.3) mutation analysis
D39V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 16(9P21.3) WILD-TYPE"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK 16(9P21.3) WILD-TYPE"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 16(9P21.3) WILD-TYPE"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 16(9P21.3) WILD-TYPE"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK 16(9P21.3) WILD-TYPE"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 16(9P21.3) WILD-TYPE"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 16(9P21.3) WILD-TYPE"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-C4-A0EZ 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-C4-A0F0                    TCGA-C4-A0F6 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-CF-A1HR                    TCGA-CF-A1HS 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-CF-A27C                    TCGA-CU-A0YN 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-CU-A0YO                    TCGA-CU-A0YR 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IS 
"DEL PEAK 16(9P21.3) WILD-TYPE"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 16(9P21.3) WILD-TYPE"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FT-A3EE 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 16(9P21.3) MUTATED"   "DEL PEAK 16(9P21.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GD-A2C5 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 16(9P21.3) MUTATED" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-H4-A2HO 
"DEL PEAK 16(9P21.3) WILD-TYPE" "DEL PEAK 16(9P21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 16(9P21.3) MUTATED" 
[1] "hr=" "1.7"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(9P21.3) MUTATED     25   11
  DEL PEAK 16(9P21.3) WILD-TYPE   18   11
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  FEMALE                          11                            11
  MALE                            25                            18
D39V4, continuous

Clustering(40) Variable = Del Peak 17(9q22.33) mutation analysis
D40V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "DEL PEAK 17(9Q22.33) MUTATED"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "DEL PEAK 17(9Q22.33) MUTATED"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "DEL PEAK 17(9Q22.33) MUTATED"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 17(9Q22.33) WILD-TYPE"   "DEL PEAK 17(9Q22.33) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 17(9Q22.33) MUTATED" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 17(9Q22.33) WILD-TYPE" "DEL PEAK 17(9Q22.33) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 17(9Q22.33) WILD-TYPE" 
[1] "hr=" "1.3"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(9Q22.33) MUTATED     20    5
  DEL PEAK 17(9Q22.33) WILD-TYPE   23   17
        clus
vv       DEL PEAK 17(9Q22.33) MUTATED DEL PEAK 17(9Q22.33) WILD-TYPE
  FEMALE                            5                             17
  MALE                             20                             23
D40V4, continuous

Clustering(41) Variable = Del Peak 18(10q23.31) mutation analysis
D41V1, survival
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-H4-A2HQ 
  "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-H4-A2HQ 
  "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-H4-A2HQ 
  "DEL PEAK 18(10Q23.31) MUTATED" 
[1] "hr=" "1"  
D41V2, continuous
D41V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(10Q23.31) MUTATED     18    9
  DEL PEAK 18(10Q23.31) WILD-TYPE   25   13
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  FEMALE                             9                              13
  MALE                              18                              25
D41V4, continuous

Clustering(42) Variable = Del Peak 19(11p15.4) mutation analysis
D42V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 19(11P15.4) WILD-TYPE"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
  "DEL PEAK 19(11P15.4) MUTATED"   "DEL PEAK 19(11P15.4) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 19(11P15.4) MUTATED" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 19(11P15.4) WILD-TYPE" "DEL PEAK 19(11P15.4) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 19(11P15.4) MUTATED" 
[1] "hr=" "1.1"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11P15.4) MUTATED     22   12
  DEL PEAK 19(11P15.4) WILD-TYPE   21   10
        clus
vv       DEL PEAK 19(11P15.4) MUTATED DEL PEAK 19(11P15.4) WILD-TYPE
  FEMALE                           12                             10
  MALE                             22                             21
D42V4, continuous

Clustering(43) Variable = Del Peak 20(11q25) mutation analysis
D43V1, survival
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
  "DEL PEAK 20(11Q25) MUTATED"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-H4-A2HQ 
  "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
  "DEL PEAK 20(11Q25) MUTATED"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-H4-A2HQ 
  "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
  "DEL PEAK 20(11Q25) MUTATED"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
"DEL PEAK 20(11Q25) WILD-TYPE"   "DEL PEAK 20(11Q25) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "DEL PEAK 20(11Q25) MUTATED" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
"DEL PEAK 20(11Q25) WILD-TYPE" "DEL PEAK 20(11Q25) WILD-TYPE" 
                  TCGA-H4-A2HQ 
  "DEL PEAK 20(11Q25) MUTATED" 
[1] "hr=" "1.4"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 20(11Q25) MUTATED     14    6
  DEL PEAK 20(11Q25) WILD-TYPE   29   16
        clus
vv       DEL PEAK 20(11Q25) MUTATED DEL PEAK 20(11Q25) WILD-TYPE
  FEMALE                          6                           16
  MALE                           14                           29
D43V4, continuous

Clustering(44) Variable = Del Peak 21(12p13.2) mutation analysis
D44V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "DEL PEAK 21(12P13.2) MUTATED" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 21(12P13.2) MUTATED" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 21(12P13.2) MUTATED" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 21(12P13.2) WILD-TYPE"   "DEL PEAK 21(12P13.2) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 21(12P13.2) MUTATED" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "DEL PEAK 21(12P13.2) MUTATED" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 21(12P13.2) MUTATED" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 21(12P13.2) MUTATED" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 21(12P13.2) WILD-TYPE"   "DEL PEAK 21(12P13.2) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 21(12P13.2) MUTATED" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "DEL PEAK 21(12P13.2) MUTATED" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 21(12P13.2) MUTATED" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 21(12P13.2) MUTATED" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 21(12P13.2) WILD-TYPE"   "DEL PEAK 21(12P13.2) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 21(12P13.2) MUTATED" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 21(12P13.2) WILD-TYPE" "DEL PEAK 21(12P13.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 21(12P13.2) WILD-TYPE" 
[1] "hr="     "8.2e+07"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(12P13.2) MUTATED      3    2
  DEL PEAK 21(12P13.2) WILD-TYPE   40   20
        clus
vv       DEL PEAK 21(12P13.2) MUTATED DEL PEAK 21(12P13.2) WILD-TYPE
  FEMALE                            2                             20
  MALE                              3                             40
D44V4, continuous

Clustering(45) Variable = Del Peak 22(13q14.2) mutation analysis
D45V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 22(13Q14.2) WILD-TYPE" 
[1] "hr=" "1.1"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(13Q14.2) MUTATED     18    9
  DEL PEAK 22(13Q14.2) WILD-TYPE   25   13
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  FEMALE                            9                             13
  MALE                             18                             25
D45V4, continuous

Clustering(46) Variable = Del Peak 23(14q32.32) mutation analysis
D46V1, survival
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
"DEL PEAK 23(14Q32.32) WILD-TYPE"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
  "DEL PEAK 23(14Q32.32) MUTATED"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
  "DEL PEAK 23(14Q32.32) MUTATED"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"DEL PEAK 23(14Q32.32) WILD-TYPE"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"DEL PEAK 23(14Q32.32) WILD-TYPE"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-H4-A2HQ 
  "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
"DEL PEAK 23(14Q32.32) WILD-TYPE"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
  "DEL PEAK 23(14Q32.32) MUTATED"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
  "DEL PEAK 23(14Q32.32) MUTATED"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"DEL PEAK 23(14Q32.32) WILD-TYPE"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"DEL PEAK 23(14Q32.32) WILD-TYPE"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-H4-A2HQ 
  "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
"DEL PEAK 23(14Q32.32) WILD-TYPE"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
  "DEL PEAK 23(14Q32.32) MUTATED"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
  "DEL PEAK 23(14Q32.32) MUTATED"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"DEL PEAK 23(14Q32.32) WILD-TYPE"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
"DEL PEAK 23(14Q32.32) WILD-TYPE" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"DEL PEAK 23(14Q32.32) WILD-TYPE"   "DEL PEAK 23(14Q32.32) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
  "DEL PEAK 23(14Q32.32) MUTATED" "DEL PEAK 23(14Q32.32) WILD-TYPE" 
                     TCGA-H4-A2HQ 
  "DEL PEAK 23(14Q32.32) MUTATED" 
[1] "hr=" "1.3"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(14Q32.32) MUTATED     16    2
  DEL PEAK 23(14Q32.32) WILD-TYPE   27   20
        clus
vv       DEL PEAK 23(14Q32.32) MUTATED DEL PEAK 23(14Q32.32) WILD-TYPE
  FEMALE                             2                              20
  MALE                              16                              27
D46V4, continuous

Clustering(47) Variable = Del Peak 24(15q13.1) mutation analysis
D47V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 24(15Q13.1) MUTATED" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 24(15Q13.1) MUTATED" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 24(15Q13.1) MUTATED" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 24(15Q13.1) MUTATED" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 24(15Q13.1) MUTATED" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 24(15Q13.1) MUTATED" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 24(15Q13.1) MUTATED" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 24(15Q13.1) MUTATED" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 24(15Q13.1) MUTATED" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 24(15Q13.1) MUTATED" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
  "DEL PEAK 24(15Q13.1) MUTATED" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 24(15Q13.1) MUTATED" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 24(15Q13.1) WILD-TYPE"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 24(15Q13.1) MUTATED"   "DEL PEAK 24(15Q13.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 24(15Q13.1) WILD-TYPE" "DEL PEAK 24(15Q13.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 24(15Q13.1) MUTATED" 
[1] "hr=" "1.4"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(15Q13.1) MUTATED     15    7
  DEL PEAK 24(15Q13.1) WILD-TYPE   28   15
        clus
vv       DEL PEAK 24(15Q13.1) MUTATED DEL PEAK 24(15Q13.1) WILD-TYPE
  FEMALE                            7                             15
  MALE                             15                             28
D47V4, continuous

Clustering(48) Variable = Del Peak 25(16p13.3) mutation analysis
D48V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 25(16P13.3) MUTATED"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 25(16P13.3) MUTATED"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 25(16P13.3) MUTATED"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 25(16P13.3) MUTATED" 
[1] "hr=" "1.1"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) MUTATED     14    8
  DEL PEAK 25(16P13.3) WILD-TYPE   29   14
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  FEMALE                            8                             14
  MALE                             14                             29
D48V4, continuous

Clustering(49) Variable = Del Peak 26(16q23.1) mutation analysis
D49V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 26(16Q23.1) MUTATED"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 26(16Q23.1) MUTATED"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 26(16Q23.1) MUTATED"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 26(16Q23.1) MUTATED"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 26(16Q23.1) MUTATED"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 26(16Q23.1) MUTATED"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 26(16Q23.1) MUTATED" 
[1] "hr=" "2.3"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q23.1) MUTATED     10    5
  DEL PEAK 26(16Q23.1) WILD-TYPE   33   17
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  FEMALE                            5                             17
  MALE                             10                             33
D49V4, continuous

Clustering(50) Variable = Del Peak 27(17p12) mutation analysis
D50V1, survival
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-H4-A2HQ 
  "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-H4-A2HQ 
  "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-C4-A0EZ 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-C4-A0F0                   TCGA-C4-A0F6 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CF-A1HR                   TCGA-CF-A1HS 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-CF-A27C                   TCGA-CU-A0YN 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CU-A0YO                   TCGA-CU-A0YR 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IS 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FT-A3EE 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GD-A2C5 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-H4-A2HO 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-H4-A2HQ 
  "DEL PEAK 27(17P12) MUTATED" 
[1] "hr=" "5.2"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 27(17P12) MUTATED     22   12
  DEL PEAK 27(17P12) WILD-TYPE   21   10
        clus
vv       DEL PEAK 27(17P12) MUTATED DEL PEAK 27(17P12) WILD-TYPE
  FEMALE                         12                           10
  MALE                           22                           21
D50V4, continuous

Clustering(51) Variable = Del Peak 28(19p13.3) mutation analysis
D51V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 28(19P13.3) MUTATED" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 28(19P13.3) WILD-TYPE"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 28(19P13.3) WILD-TYPE" "DEL PEAK 28(19P13.3) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
  "DEL PEAK 28(19P13.3) MUTATED"   "DEL PEAK 28(19P13.3) MUTATED" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 28(19P13.3) MUTATED" 
[1] "hr=" "1.4"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(19P13.3) MUTATED     16   11
  DEL PEAK 28(19P13.3) WILD-TYPE   27   11
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  FEMALE                           11                             11
  MALE                             16                             27
D51V4, continuous

Clustering(52) Variable = Del Peak 29(22q13.32) mutation analysis
D52V1, survival
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-H4-A2HQ 
  "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-H4-A2HQ 
  "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-BT-A20X                      TCGA-C4-A0EZ 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-C4-A0F0                      TCGA-C4-A0F6 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-CF-A1HR                      TCGA-CF-A1HS 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-CF-A27C                      TCGA-CU-A0YN 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-CU-A0YO                      TCGA-CU-A0YR 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IS 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FT-A3EE 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GD-A2C5 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-H4-A2HO 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-H4-A2HQ 
  "DEL PEAK 29(22Q13.32) MUTATED" 
[1] "hr=" "1.3"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 29(22Q13.32) MUTATED     12   12
  DEL PEAK 29(22Q13.32) WILD-TYPE   31   10
        clus
vv       DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE
  FEMALE                            12                              10
  MALE                              12                              31
D52V4, continuous

Clustering(53) Variable = Del Peak 30(Xq21.33) mutation analysis
D53V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 30(XQ21.33) MUTATED"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 30(XQ21.33) MUTATED"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-C4-A0EZ 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-C4-A0F0                     TCGA-C4-A0F6 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-CF-A1HR                     TCGA-CF-A1HS 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-CF-A27C                     TCGA-CU-A0YN 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-CU-A0YO                     TCGA-CU-A0YR 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IS 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FT-A3EE 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GD-A2C5 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 30(XQ21.33) MUTATED"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-H4-A2HO 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 30(XQ21.33) MUTATED" 
[1] "hr=" "1.8"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(XQ21.33) MUTATED      9    7
  DEL PEAK 30(XQ21.33) WILD-TYPE   34   15
        clus
vv       DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE
  FEMALE                            7                             15
  MALE                              9                             34
D53V4, continuous

Clustering(54) Variable = Del Peak 31(Xq23) mutation analysis
D54V1, survival
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-H4-A2HQ 
  "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-H4-A2HQ 
  "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-C4-A0EZ 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-C4-A0F0                  TCGA-C4-A0F6 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-CF-A1HR                  TCGA-CF-A1HS 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-CF-A27C                  TCGA-CU-A0YN 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-CU-A0YO                  TCGA-CU-A0YR 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IS 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FT-A3EE 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
  "DEL PEAK 31(XQ23) MUTATED" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GD-A2C5 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
"DEL PEAK 31(XQ23) WILD-TYPE"   "DEL PEAK 31(XQ23) MUTATED" 
                 TCGA-GV-A3JZ                  TCGA-H4-A2HO 
"DEL PEAK 31(XQ23) WILD-TYPE" "DEL PEAK 31(XQ23) WILD-TYPE" 
                 TCGA-H4-A2HQ 
  "DEL PEAK 31(XQ23) MUTATED" 
[1] "hr=" "2.9"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 31(XQ23) MUTATED      8    7
  DEL PEAK 31(XQ23) WILD-TYPE   35   15
        clus
vv       DEL PEAK 31(XQ23) MUTATED DEL PEAK 31(XQ23) WILD-TYPE
  FEMALE                         7                          15
  MALE                           8                          35
D54V4, continuous
                         V1.D                            V2 
              "Time to Death"                         "AGE" 
                           V3                            V4 
                     "GENDER" "KARNOFSKY.PERFORMANCE.SCORE" 
> q(save="no")
