# Created: Fri Oct 19 15:43:54 EDT 2012 by cgaadm_interactive
# Job: 199155    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: GDAC_MutSig_Report urn:lsid:broadinstitute.org:cancer.genome.analysis:00413:33
# Parameters: 
#    bar_plot = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.bargraphs.png
#    breakdown_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.mutation_breakdown.txt
#    categories_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.mutation_rates.txt
#    coverage.png = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.covplot.png
#    sig_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.sig_genes.txt
#    cosmic_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.cosmic_sig_genes.txt
#    cosmic_table2 = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.cosmic_sig_genes2.txt
#    cosmic_muts_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.cosmic_mutations.txt
#    cluster_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.clustered_muts.txt
#    geneset_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.sig_genesets.txt
#    genset_table2 = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.sig_genesets_2.txt
#    patients_c_and_r = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.patients.counts_and_rates.txt
#    ind_set = COADREAD
#    mutsig_version = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.MutSig_version.txt
#    coMut_plot_png = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/CoMut/COADREAD/1785130/0.CoMut.Finished/COADREAD_coMut.png
#    coMut_plot_pdf = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/CoMut/COADREAD/1785130/0.CoMut.Finished/COADREAD_coMut.pdf
#    stick_figures_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GenerateStickFigures/COADREAD/1785132/0.GenerateStickFigures.Finished/generatedStickFigurePaths.txt
#    maf_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.final_analysis_set.maf
#    mut_pre_rep_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
#    mut_filt_rep_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD/1783243/0.MutSigRun.Finished/COADREAD.mutation_filtering_report.txt
