
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/GBM/1929622/1.GDAC_mergedClustering.Finished/GBM.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/GBM/1708828/1.GDAC_clinicalDataPicker.Finished/GBM.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=565, in cluster file=584, common to both=563
[1]   8 563
[1] "MRNA_CNMF"
[1] 3
  1   2   3 
177 172 170 
  1   2   3 
177 172 170 
[1] "MRNA_CHIERARCHICAL"
[1] 3
  1   2   3 
223 127 169 
  1   2   3 
223 127 169 
[1] "MIR_CNMF"
[1] 3
  1   2   3   4 
144 159  74 105 
  1   2   3   4 
144 159  74 105 
[1] "MIR_CHIERARCHICAL"
[1] 3
  1   2   3 
170 180 132 
  1   2   3 
170 180 132 
[1] "CN_CNMF"
[1] 3
  1   2   3 
159 210 175 
  1   2   3 
159 210 175 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
47 37 34 
 1  2  3 
47 37 34 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4 
58 60 43 49 
 1  2  3  4 
58 60 43 49 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3 
97 72 41 
 1  2  3 
97 72 41 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "KARNOFSKYPERFORMANCESCORE"             
[10] "HISTOLOGICALTYPE"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "NEOADJUVANTTHERAPY"                    
[13] "BATCHNUMBER"                           

Input Data has 13 rows and 563 columns.

[1] "Batch" "13"   
[1] "Last Follow UP"
TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
         278          144          345          558          705          322 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
        1077          630         2511          627         1699         2361 
TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
         612         1614         1300          748          315         2755 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
          86          430          109          326          320          556 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
         208          447           97          458          383          199 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
          76          604          254          291          183          600 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
         804          873          762          167          310          634 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
         828         2729          691            7         1560          268 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
        1757          515          106          821         1977          355 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
         537          704         2817         3040          476         1489 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
         503          514          538          327          440          121 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
         422          432          485          372          300          234 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
         323            5          484          782          133          764 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0439 
         322          377          441          321         1433           20 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
         345          281          492          102          511          393 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
         465          469          492            8          123         1439 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
           3          108          691          988          320          570 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0141 TCGA-06-0143 
         428          701          674          327          280          357 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0152 
          71          611          508          298          238          359 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0156 TCGA-06-0157 TCGA-06-0158 TCGA-06-0162 
         389          263          164           97          166           78 
TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
        1729          161          579           95          396            7 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
          67           83         1561           60         1642          578 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
          77         1228         1126          801          866          454 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
         313          556          142          214           79           12 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
         196          166          118          151          360            6 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
         378          684           10          548          314          359 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
         455          313          168            8         2145          142 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
         245            5         1065          375           98          136 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
         293           62          717          285          678          594 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
         163           82           65           28          279          271 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
         204          218          699          178          165          637 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
         226          193          109          815          263          239 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
         413          127           33           23          149          282 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
          86          259          181          207          182          133 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
          13          285          341          107          254          138 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5417 TCGA-06-5418 
         268          273          260          204          155           83 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
         114          186          138          119          236          163 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
          44           15          224          252          391          145 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
          47          145          151          690         1057          119 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
        3310           53          132          419          316          231 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
         103         1636           39          195          458          685 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0360 TCGA-08-0373 
         447         1084          593           29          352          134 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0385 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
         279          330           31          478           97          322 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0511 TCGA-08-0512 TCGA-08-0514 
           9           17          106          235          358          259 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0522 
         561         1770           39          326          146          555 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
         198          486          526          168          426          438 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 
          49          316          181           NA          218         2004 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
           3         1161          790          734          185           80 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
         550           NA          378         1615         1311          167 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
         277          451          434         2790          753          562 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
         323          715          845         1179          271          626 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
        3880          177          189          929          658          364 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
         346          482          277          442          121          103 
TCGA-12-1597 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
         427          287          769          414          194         1807 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
        1314          784          351          333          358         1050 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
         357          398           98           61          459          364 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
          29          188          701           68          342          418 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
          99           41          164           88          502          801 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
          62          879          485          587           24           42 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
          34          114          974         1788          703          216 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
          35          917           28         1245          186          378 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
          30           59          540          542          232          179 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3476 TCGA-14-3477 TCGA-14-4157 
         217          532          242           12          114          103 
TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
         300          581         1618          167          119          302 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
         793          496          130          882           25          301 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
         406          111          556          425          195          358 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
         665          262           13          434          103          327 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
         276          181          394          141          772          106 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1788 TCGA-19-1789 TCGA-19-1790 TCGA-19-1791 
         217          385          111           99          153            4 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
         294          148           33          229            5          124 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
         501          213          214          136          202          343 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
         244          567          144          242           54          198 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
         164          161          165          305          422          296 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
         953          216          285          286          452          167 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
         269           37           48          241           70          146 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
         504           NA          555         1008          648          914 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
         427          350          752          316          316          489 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1745 TCGA-28-1746 
         231           87          438          479          344            6 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
          77          279          253          231          257           36 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-1760 TCGA-28-2502 TCGA-28-2506 
          46           86            4          143           20          205 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
         145          222          160          119          275          473 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
          77          358          298          432          237          415 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
         128          259          319          165          467          641 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
          15            3          482          593           36          142 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
         386          451          515          372          632          456 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
         485          223          269          270          224          400 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
         338          112          383          356          330          165 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
          26          406          272          290           30          135 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
         183            6          351          235          105          533 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
         131          436          250          227          145          138 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
         535           94          111          278         1458           77 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
         328          507          100           82          346          519 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
         253          637          147          153            7          281 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
         234          236           49          538            2 
Variable 1:'AGE':	nDistinctValues=72,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=341,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=406,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=23,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'BATCH.NUMBER':	nDistinctValues=18,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "RADIATIONS.RADIATION.REGIMENINDICATION"
[5] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 563 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=72, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2        0   1
  subtype1  32 145
  subtype2  43 129
  subtype3  41 129
subtype1 subtype2 subtype3 
     177      172      170 
subtype1 subtype2 subtype3 
     145      129      129 
$subtype1
TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        11.34        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0021 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 
       20.71        20.61        77.62        53.06        42.74        10.36 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
       90.58         2.83        14.14        10.72        10.52        18.28 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 
        6.84        14.70        15.06        12.59         6.54        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0075 TCGA-02-0079 
        8.35         9.57         6.02        19.73        20.84        27.22 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0106 TCGA-02-0107 
       51.29         8.81        16.93         3.48        11.67        17.65 
TCGA-02-0111 TCGA-02-0116 TCGA-02-0330 TCGA-02-0337 TCGA-02-0451 TCGA-02-0456 
       23.15        48.95        15.91        25.12        16.18         3.35 
TCGA-02-2470 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 TCGA-06-0130 TCGA-06-0139 
       12.92        16.18         0.26         4.04        10.52        10.75 
TCGA-06-0141 TCGA-06-0143 TCGA-06-0147 TCGA-06-0149 TCGA-06-0155 TCGA-06-0156 
        9.21        11.74        16.70         7.82         8.65         5.39 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0168 TCGA-06-0169 TCGA-06-0175 TCGA-06-0176 
        2.56        56.84        19.04         3.12         2.73        51.32 
TCGA-06-0179 TCGA-06-0184 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       19.00        40.37        14.93        10.29        18.28         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0210 TCGA-06-0213 TCGA-06-0397 
        2.60         0.39         6.44         4.96         0.20         5.52 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0644 TCGA-06-0645 TCGA-06-0649 TCGA-06-0650 
       70.52         8.05        12.33         3.22         2.04        23.57 
TCGA-06-0750 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
        0.92         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1800 TCGA-06-1802 TCGA-06-2567 TCGA-06-5410 TCGA-06-5412 TCGA-06-5858 
       26.79         7.86         4.37         3.52         4.54         6.12 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0352 TCGA-08-0360 TCGA-08-0373 TCGA-08-0380 
        1.74         4.34         1.28        11.57         4.41        10.85 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0522 
       10.59         0.30         0.56         3.48        11.77        18.25 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       10.39         5.95         7.17        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0822 TCGA-12-0829 TCGA-12-1088 TCGA-12-1092 
        9.11        14.83        23.51        20.58       127.56        21.63 
TCGA-12-1093 TCGA-12-1095 TCGA-12-1096 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 
       11.97        15.85         9.11        15.09         0.95         6.18 
TCGA-14-0789 TCGA-14-0812 TCGA-14-0817 TCGA-14-0867 TCGA-14-1037 TCGA-14-1396 
       11.24         3.25         5.39         2.04        19.30         1.12 
TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-16-1045 TCGA-16-1055 TCGA-16-1060 
       17.82         7.13        17.49        29.00         9.90         3.65 
TCGA-19-1385 TCGA-19-1389 TCGA-19-1787 TCGA-19-1790 TCGA-19-2623 TCGA-19-5947 
       10.75         4.64        12.66         5.03         7.53         6.64 
TCGA-19-5955 TCGA-26-1438 TCGA-26-5136 TCGA-26-5139 TCGA-27-1830 TCGA-27-1832 
        1.78        10.03         1.22         1.58         4.80         9.86 
TCGA-27-2519 TCGA-27-2524 TCGA-27-2527 TCGA-28-1745 TCGA-28-1750 TCGA-28-1751 
       10.39         7.59        14.40        11.31         8.32         7.59 
TCGA-28-1752 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-5207 TCGA-28-5208 
        8.45         0.66         4.77         7.30         9.04        15.55 
TCGA-28-5209 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
        2.53         9.80        14.20         7.79        13.64         4.21 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 
        4.67        12.69        14.83        12.23        20.78        15.95 
TCGA-32-2632 TCGA-32-4209 TCGA-32-4211 TCGA-32-4213 TCGA-41-3393 TCGA-41-3915 
        8.84        11.11        12.59        11.70         4.44         6.02 
TCGA-41-4097 TCGA-76-6193 TCGA-76-6282 
        0.20         2.70        17.06 

$subtype2
TCGA-02-0014 TCGA-02-0026 TCGA-02-0048 TCGA-02-0069 TCGA-02-0074 TCGA-02-0080 
       82.55        24.59         3.19        28.70        10.19        89.72 
TCGA-02-0084 TCGA-02-0087 TCGA-02-0104 TCGA-02-0114 TCGA-02-0258 TCGA-02-0281 
        0.23        57.76        65.00        99.95        16.54         3.98 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 TCGA-02-0338 
        9.86         7.69        10.62         0.16        25.71        10.59 
TCGA-02-0339 TCGA-02-0432 TCGA-02-0439 TCGA-02-0440 TCGA-02-0446 TCGA-02-2466 
       12.39        47.11         0.66        11.34         9.24        16.80 
TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 
       15.29        22.72        32.48        18.74        14.07        22.16 
TCGA-06-0146 TCGA-06-0166 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0177 
       20.09         5.29        13.02         0.23         2.20         1.97 
TCGA-06-0178 TCGA-06-0188 TCGA-06-0195 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 
       53.98        28.47         7.04        12.43         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 
       10.32        11.80        14.96         4.67         0.16        35.01 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0686 TCGA-06-0745 TCGA-06-0749 TCGA-06-0875 
        4.47         9.63         9.37         5.36         2.14         9.17 
TCGA-06-1087 TCGA-06-1801 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        3.58         8.65         4.18         1.08         0.76         4.90 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5411 TCGA-06-5413 TCGA-06-5416 TCGA-06-5417 
        0.43         9.37         8.35         8.81         6.71         5.10 
TCGA-06-5859 TCGA-06-6389 TCGA-06-6391 TCGA-08-0245 TCGA-08-0344 TCGA-08-0347 
        4.54         7.76         1.45        34.75       108.82        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0359 TCGA-08-0385 
       10.39         7.59         3.39        53.79         0.95         1.02 
TCGA-08-0389 TCGA-08-0517 TCGA-08-0524 TCGA-12-0616 TCGA-12-0618 TCGA-12-0670 
        3.19        58.19         6.51        14.40         1.61        25.97 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0821 TCGA-12-0827 TCGA-12-1089 TCGA-12-1097 
       91.73        24.76        10.62        38.76         5.82        14.53 
TCGA-12-1099 TCGA-12-1597 TCGA-12-1598 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        3.39        14.04         9.44         6.38        59.41        43.20 
TCGA-12-3650 TCGA-12-3651 TCGA-12-5301 TCGA-14-0813 TCGA-14-0865 TCGA-14-0871 
       10.95        11.77         2.01         1.35        16.50        28.90 
TCGA-14-1401 TCGA-14-1451 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        3.75        23.11        30.15         0.92        40.93         6.12 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-3476 
        0.99         1.94        17.75         7.63         5.88         0.39 
TCGA-14-3477 TCGA-14-4157 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
        3.75         3.39        53.19         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 
       26.07        16.31         4.27         6.41        21.86         8.61 
TCGA-19-0963 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 TCGA-19-1788 
       14.27         5.95        12.95        25.38         3.48         3.65 
TCGA-19-2624 TCGA-19-2629 TCGA-19-5956 TCGA-19-5960 TCGA-26-1442 TCGA-26-1799 
        0.16        16.47         6.51         5.42        31.33         9.37 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 
       14.86         5.49         8.84        33.14        30.05        14.04 
TCGA-27-2518 TCGA-27-2521 TCGA-28-1746 TCGA-28-1747 TCGA-28-1753 TCGA-28-1756 
       24.72        10.39         0.20         2.53         1.18         2.83 
TCGA-28-2506 TCGA-28-2514 TCGA-28-5204 TCGA-32-1973 TCGA-32-1976 TCGA-32-1980 
        6.74         5.26         3.91        21.07         0.49         1.18 
TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 
        8.88        13.15         3.68         5.42         0.85         8.94 
TCGA-41-2575 TCGA-41-5651 TCGA-76-4925 TCGA-76-4929 TCGA-76-4932 TCGA-76-4934 
        9.53        11.54         4.77         3.65        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6285 
       10.78        16.67         3.29         8.32 

$subtype3
TCGA-02-0016 TCGA-02-0023 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0083 
       55.86        20.12        26.43        25.05         5.49        22.72 
TCGA-02-0102 TCGA-02-0113 TCGA-02-0115 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       26.99        92.61        15.65        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0333 
       14.47        13.87        14.20        15.95        12.23         4.37 
TCGA-02-0422 TCGA-02-0430 TCGA-02-2485 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
       14.50        10.55        15.42        47.31         0.10         3.55 
TCGA-06-0137 TCGA-06-0145 TCGA-06-0148 TCGA-06-0152 TCGA-06-0154 TCGA-06-0157 
       23.05         2.33         9.80        11.80        12.79         3.19 
TCGA-06-0158 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0208 TCGA-06-0211 
        5.46         2.53        37.02        26.33         5.46        11.84 
TCGA-06-0216 TCGA-06-0394 TCGA-06-0402 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 
       22.49        10.29         0.26        22.29        19.53         2.70 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-1804 TCGA-06-2561 
        8.91         6.71         7.17        22.98        13.58         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-5408 
        2.83         8.52         5.95         6.81         5.98        11.21 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-6390 TCGA-08-0244 
        8.98         8.55         2.73         3.75         5.36        22.68 
TCGA-08-0246 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        3.91         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0375 TCGA-08-0386 TCGA-08-0511 TCGA-08-0514 TCGA-08-0516 
       19.50         9.17        15.72         7.73         8.52        18.44 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
        1.28        10.72         4.80        15.98        17.29         5.52 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       65.88         0.10        24.13         2.63        18.08        28.37 
TCGA-12-0780 TCGA-12-0820 TCGA-12-0826 TCGA-12-0828 TCGA-12-1090 TCGA-12-1091 
       14.27        18.48        27.78         8.91         6.21        30.54 
TCGA-12-1094 TCGA-12-1098 TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 
       11.38         3.98        25.28        13.61        25.78        11.54 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0786 TCGA-14-0787 
       34.52        11.74        13.08         3.22        23.05         2.24 
TCGA-14-0790 TCGA-14-0866 TCGA-14-1034 TCGA-14-1402 TCGA-14-1452 TCGA-14-1453 
       13.74        26.33        15.95        32.02         7.10         1.15 
TCGA-14-1459 TCGA-14-2555 TCGA-15-0742 TCGA-15-1446 TCGA-16-1047 TCGA-16-1056 
       12.43         7.96         9.86        19.10         0.82        13.35 
TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 TCGA-19-0962 TCGA-19-0964 TCGA-19-1386 
       18.28        13.97        11.77         0.43         3.39         9.07 
TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        7.13         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4068 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        4.08         7.00         4.47        11.28         8.02        18.64 
TCGA-19-5954 TCGA-19-5958 TCGA-19-5959 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 
        7.96         5.39         5.29        13.87         9.73         7.10 
TCGA-26-5132 TCGA-27-1831 TCGA-27-1833 TCGA-27-1835 TCGA-27-1838 TCGA-27-2523 
        9.40        16.57        18.25        21.30        11.51        16.08 
TCGA-27-2526 TCGA-27-2528 TCGA-28-1749 TCGA-28-1755 TCGA-28-1757 TCGA-28-1760 
        2.86        15.75         9.17         1.51         0.13         4.70 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1978 
        8.52        10.49         5.42        15.35         0.10        15.85 
TCGA-32-1979 TCGA-32-1991 TCGA-32-2495 TCGA-32-2616 TCGA-32-2638 TCGA-32-4719 
       19.50        16.93        14.99         7.33         7.36        10.85 
TCGA-41-2572 TCGA-41-3392 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4931 
       13.35         0.99         4.54        17.59         3.09         9.14 
TCGA-81-5910 TCGA-87-5896 
        1.61         0.07 

subtype1 subtype2 subtype3 
    0.20     0.16     0.07 
subtype1 subtype2 subtype3 
  127.56   108.82    92.61 
subtype1 subtype2 subtype3 
  10.030    9.205   10.735 
[1] "0.2 - 127.6 (10.0)" "0.2 - 108.8 (9.2)"  "0.1 - 92.6 (10.7)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[289] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[295] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[319] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[331] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[337] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[349] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[355] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[373] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[379] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[385] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[391] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[397] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[409] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[421] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[433] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[439] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[445] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[451] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[457] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[475] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[481] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[487] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[493] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[499] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[505] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[511] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[517] "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[289] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[295] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[319] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[331] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[337] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[349] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[355] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[373] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[379] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[385] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[391] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[397] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[409] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[421] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[433] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[439] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[445] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[451] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[457] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[475] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[481] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[487] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[493] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[499] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[505] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[511] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[517] "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[289] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[295] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[319] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[331] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[337] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[349] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[355] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[373] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[379] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[385] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[391] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[397] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[409] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[421] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[433] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[439] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[445] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[451] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[457] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[475] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[481] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[487] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[493] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[499] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[505] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[511] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[517] "subtype2" "subtype3" "subtype3"
D1V2, continuous
D1V3, binary
          cls
clus         0   1
  subtype1  70 107
  subtype2  62 110
  subtype3  72  98
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   70  107
  subtype2   62  110
  subtype3   72   98
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       70       62       72
  MALE        107      110       98
D1V4, continuous
D1V5, binary
          cls
clus         0   1
  subtype1 119  58
  subtype2 108  64
  subtype3 121  49
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  119   58
  subtype2  108   64
  subtype3  121   49
     clus
vv    subtype1 subtype2 subtype3
  NO       119      108      121
  YES       58       64       49
D1V6, binary
          cls
clus        0  1
  subtype1 94 83
  subtype2 86 86
  subtype3 90 80
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   94   83
  subtype2   86   86
  subtype3   90   80
     clus
vv    subtype1 subtype2 subtype3
  NO        94       86       90
  YES       83       86       80

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2        0   1
  subtype1  41 182
  subtype2  33  94
  subtype3  42 127
subtype1 subtype2 subtype3 
     223      127      169 
subtype1 subtype2 subtype3 
     182       94      127 
$subtype1
TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        11.34        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0021 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 
       20.71        20.61        77.62        53.06        42.74        10.36 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
       90.58         2.83        14.14        10.72        10.52        18.28 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 
        6.84        14.70        15.06        12.59         6.54        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0086 TCGA-02-0099 TCGA-02-0102 
        5.49        20.84        27.22         8.81         3.48        26.99 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0116 TCGA-02-0266 TCGA-02-0271 
       11.67        17.65        23.15        48.95        17.69        14.47 
TCGA-02-0285 TCGA-02-0330 TCGA-02-0337 TCGA-02-0456 TCGA-02-2486 TCGA-06-0122 
       13.87        15.91        25.12         3.35        16.18         0.26 
TCGA-06-0124 TCGA-06-0130 TCGA-06-0137 TCGA-06-0139 TCGA-06-0141 TCGA-06-0143 
        4.04        10.52        23.05        10.75         9.21        11.74 
TCGA-06-0145 TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        2.33        16.70         7.82        11.80        12.79         8.65 
TCGA-06-0164 TCGA-06-0168 TCGA-06-0169 TCGA-06-0175 TCGA-06-0176 TCGA-06-0182 
       56.84        19.04         3.12         2.73        51.32         2.53 
TCGA-06-0184 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       40.37        26.33        14.93        10.29        18.28         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0210 TCGA-06-0213 TCGA-06-0394 
        2.60         0.39         6.44         4.96         0.20        10.29 
TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 TCGA-06-0644 TCGA-06-0645 TCGA-06-0649 
        5.52        70.52         8.05        12.33         3.22         2.04 
TCGA-06-0650 TCGA-06-0750 TCGA-06-0878 TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 
       23.57         0.92         7.17         5.85        20.94         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-2562 TCGA-06-2567 TCGA-06-2569 
        6.35         3.58        26.79         2.83         4.37         0.43 
TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5418 TCGA-06-5858 
        3.52         4.54         8.81         8.98         2.73         6.12 
TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 
        3.91         1.74         4.34         1.28        15.06        22.52 
TCGA-08-0356 TCGA-08-0360 TCGA-08-0373 TCGA-08-0380 TCGA-08-0390 TCGA-08-0392 
       14.70        11.57         4.41        10.85        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0520 TCGA-08-0522 TCGA-08-0525 
        0.56         3.48        11.77        10.72        18.25        15.98 
TCGA-08-0529 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0772 TCGA-12-0773 
       17.29        10.39         5.95         7.17        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0822 TCGA-12-0827 TCGA-12-0829 TCGA-12-1090 
        5.49         9.11        23.51        38.76        20.58         6.21 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1598 
       21.63        11.97        11.38        15.85         9.11         9.44 
TCGA-12-3644 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       59.41        13.08         3.22         2.01        15.09         0.95 
TCGA-14-0783 TCGA-14-0789 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        6.18        11.24         5.39         2.04        28.90        15.95 
TCGA-14-1037 TCGA-14-1396 TCGA-14-1402 TCGA-14-1452 TCGA-14-1794 TCGA-14-1823 
       19.30         1.12        32.02         7.10         0.99        17.82 
TCGA-14-1829 TCGA-14-2554 TCGA-16-1045 TCGA-16-1055 TCGA-16-1060 TCGA-19-1385 
        7.13        17.49        29.00         9.90         3.65        10.75 
TCGA-19-1389 TCGA-19-1787 TCGA-19-1790 TCGA-19-2623 TCGA-19-2625 TCGA-19-5947 
        4.64        12.66         5.03         7.53         4.08         6.64 
TCGA-19-5952 TCGA-19-5955 TCGA-26-1438 TCGA-26-1439 TCGA-26-5132 TCGA-26-5136 
       18.64         1.78        10.03        13.87         9.40         1.22 
TCGA-26-5139 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1838 
        1.58         4.80        16.57         9.86        33.14        11.51 
TCGA-27-2519 TCGA-27-2524 TCGA-27-2527 TCGA-28-1745 TCGA-28-1750 TCGA-28-1751 
       10.39         7.59        14.40        11.31         8.32         7.59 
TCGA-28-1753 TCGA-28-1760 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-5207 
        1.18         4.70         0.66         4.77         7.30         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       15.55         2.53         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-32-1973 TCGA-32-1977 TCGA-32-1979 TCGA-32-1986 
        4.21         8.52        21.07         0.10        19.50        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 
       14.83        16.93        12.23        20.78        15.95         7.33 
TCGA-32-2638 TCGA-32-4209 TCGA-32-4213 TCGA-32-4719 TCGA-41-3393 TCGA-41-3915 
        7.36        11.11        11.70        10.85         4.44         6.02 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-6193 
        4.54        17.59         3.09         3.65         9.14         2.70 
TCGA-76-6282 
       17.06 

$subtype2
TCGA-02-0016 TCGA-02-0023 TCGA-02-0048 TCGA-02-0083 TCGA-02-0113 TCGA-02-0115 
       55.86        20.12         3.19        22.72        92.61        15.65 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0333 
       16.90        10.75        14.20        15.95        12.23         4.37 
TCGA-02-0422 TCGA-02-0430 TCGA-02-2485 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
       14.50        10.55        15.42        47.31         0.10         3.55 
TCGA-06-0148 TCGA-06-0157 TCGA-06-0158 TCGA-06-0211 TCGA-06-0216 TCGA-06-0402 
        9.80         3.19         5.46        11.84        22.49         0.26 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0876 TCGA-06-0877 
       22.29        19.53         5.36         2.70         8.91         6.71 
TCGA-06-0879 TCGA-06-1804 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
       22.98        13.58         9.27         8.52         5.95         6.81 
TCGA-06-2566 TCGA-06-5408 TCGA-06-5415 TCGA-06-5856 TCGA-06-6390 TCGA-08-0244 
        5.98        11.21         8.55         3.75         5.36        22.68 
TCGA-08-0353 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 TCGA-08-0386 TCGA-08-0511 
        6.41        35.64        19.50         9.17        15.72         7.73 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0521 TCGA-08-0531 TCGA-12-0656 
        8.52        18.44         1.28         4.80         5.52        65.88 
TCGA-12-0657 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0778 
        0.10        24.13         2.63        18.08        28.37        14.83 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0821 TCGA-12-0826 TCGA-12-0828 TCGA-12-1089 
       14.27        24.76        10.62        27.78         8.91         5.82 
TCGA-12-1091 TCGA-12-1098 TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 
       30.54         3.98        25.28        13.61        25.78        11.54 
TCGA-12-3652 TCGA-12-3653 TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 TCGA-14-1453 
       34.52        11.74        23.05         2.24        13.74         1.15 
TCGA-14-1459 TCGA-14-2555 TCGA-15-0742 TCGA-15-1446 TCGA-16-1047 TCGA-16-1056 
       12.43         7.96         9.86        19.10         0.82        13.35 
TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 TCGA-19-0962 TCGA-19-0964 TCGA-19-1386 
       18.28        13.97        11.77         0.43         3.39         9.07 
TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        7.13         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5950 TCGA-19-5951 TCGA-19-5954 TCGA-19-5958 
        7.00         4.47        11.28         8.02         7.96         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1440 TCGA-26-1443 TCGA-27-1833 TCGA-27-1835 
        5.29         5.42         9.73         7.10        18.25        21.30 
TCGA-27-1837 TCGA-27-2518 TCGA-27-2523 TCGA-27-2526 TCGA-27-2528 TCGA-28-1749 
       14.04        24.72        16.08         2.86        15.75         9.17 
TCGA-28-1755 TCGA-28-1757 TCGA-28-2506 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
        1.51         0.13         6.74        10.49         5.42        15.35 
TCGA-32-1978 TCGA-32-2495 TCGA-41-2572 TCGA-41-3392 TCGA-41-4097 TCGA-81-5910 
       15.85        14.99        13.35         0.99         0.20         1.61 
TCGA-87-5896 
        0.07 

$subtype3
TCGA-02-0014 TCGA-02-0026 TCGA-02-0069 TCGA-02-0074 TCGA-02-0080 TCGA-02-0084 
       82.55        24.59        28.70        10.19        89.72         0.23 
TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0104 TCGA-02-0114 TCGA-02-0258 
       51.29        57.76        16.93        65.00        99.95        16.54 
TCGA-02-0281 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 
        3.98         9.86         7.69        10.62         0.16        25.71 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 TCGA-02-0439 TCGA-02-0440 TCGA-02-0446 
       10.59        12.39        47.11         0.66        11.34         9.24 
TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 
       16.18        16.80        12.92        15.29        22.72        32.48 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0146 TCGA-06-0156 TCGA-06-0162 
       18.74        14.07        22.16        20.09         5.39         2.56 
TCGA-06-0166 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0177 TCGA-06-0178 
        5.29        13.02         0.23         2.20         1.97        53.98 
TCGA-06-0179 TCGA-06-0185 TCGA-06-0188 TCGA-06-0195 TCGA-06-0208 TCGA-06-0214 
       19.00        37.02        28.47         7.04         5.46        12.43 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0410 
        0.33        18.02        10.32        11.80        14.96         4.67 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0646 TCGA-06-0648 TCGA-06-0686 TCGA-06-0749 
        0.16        35.01         4.47         9.63         9.37         2.14 
TCGA-06-0875 TCGA-06-0882 TCGA-06-1801 TCGA-06-1802 TCGA-06-1805 TCGA-06-2557 
        9.17         5.42         8.65         7.86         4.18         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2570 TCGA-06-5411 TCGA-06-5416 TCGA-06-5417 
        0.76         4.90         9.37         8.35         6.71         5.10 
TCGA-06-5859 TCGA-06-6389 TCGA-06-6391 TCGA-08-0245 TCGA-08-0344 TCGA-08-0347 
        4.54         7.76         1.45        34.75       108.82        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0359 TCGA-08-0385 
       10.39         7.59         3.39        53.79         0.95         1.02 
TCGA-08-0389 TCGA-08-0517 TCGA-08-0524 TCGA-12-0616 TCGA-12-0618 TCGA-12-0670 
        3.19        58.19         6.51        14.40         1.61        25.97 
TCGA-12-0818 TCGA-12-0820 TCGA-12-1088 TCGA-12-1097 TCGA-12-1099 TCGA-12-1597 
       91.73        18.48       127.56        14.53         3.39        14.04 
TCGA-12-1602 TCGA-12-3646 TCGA-12-3650 TCGA-12-3651 TCGA-14-0812 TCGA-14-0813 
        6.38        43.20        10.95        11.77         3.25         1.35 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1401 TCGA-14-1451 TCGA-14-1454 TCGA-14-1455 
       16.50        26.33         3.75        23.11        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       40.93         6.12         1.94        17.75         7.63         5.88 
TCGA-14-3476 TCGA-14-3477 TCGA-14-4157 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
        0.39         3.75         3.39        53.19         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1460 TCGA-19-0957 
        9.93        26.07        16.31         4.27         6.41        21.86 
TCGA-19-0960 TCGA-19-0963 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 
        8.61        14.27         5.95        12.95        25.38         3.48 
TCGA-19-1788 TCGA-19-2624 TCGA-19-2629 TCGA-19-5956 TCGA-26-1442 TCGA-26-1799 
        3.65         0.16        16.47         6.51        31.33         9.37 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-27-1836 TCGA-27-2521 TCGA-28-1746 
       14.86         5.49         8.84        30.05        10.39         0.20 
TCGA-28-1747 TCGA-28-1752 TCGA-28-1756 TCGA-28-2514 TCGA-28-5204 TCGA-32-1976 
        2.53         8.45         2.83         5.26         3.91         0.49 
TCGA-32-1980 TCGA-32-1982 TCGA-32-2632 TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 
        1.18         4.67         8.84         8.88        13.15         3.68 
TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-5651 
       12.59         5.42         0.85         8.94         9.53        11.54 
TCGA-76-4925 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        4.77        47.93         2.53        10.78        16.67         3.29 
TCGA-76-6285 
        8.32 

subtype1 subtype2 subtype3 
    0.10     0.07     0.16 
subtype1 subtype2 subtype3 
   90.58    92.61   127.56 
subtype1 subtype2 subtype3 
   10.36     9.80     9.37 
[1] "0.1 - 90.6 (10.4)" "0.1 - 92.6 (9.8)"  "0.2 - 127.6 (9.4)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[253] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[259] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[265] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[283] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[289] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[301] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[307] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[331] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[337] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[349] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[355] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[367] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[373] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[379] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[385] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[397] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[403] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[415] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[421] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[427] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[439] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[445] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[451] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[457] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[469] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[475] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[481] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[487] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[493] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[499] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[505] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[511] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[517] "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[253] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[259] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[265] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[283] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[289] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[301] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[307] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[331] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[337] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[349] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[355] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[367] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[373] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[379] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[385] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[397] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[403] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[415] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[421] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[427] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[439] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[445] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[451] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[457] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[469] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[475] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[481] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[487] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[493] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[499] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[505] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[511] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[517] "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[253] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[259] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[265] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[283] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[289] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[301] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[307] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[331] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[337] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[349] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[355] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[367] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[373] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[379] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[385] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[397] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[403] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[415] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[421] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[427] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[439] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[445] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[451] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[457] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[469] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[475] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[481] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[487] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[493] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[499] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[505] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[511] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[517] "subtype3" "subtype2" "subtype2"
D2V2, continuous
D2V3, binary
          cls
clus         0   1
  subtype1  90 133
  subtype2  53  74
  subtype3  61 108
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   90  133
  subtype2   53   74
  subtype3   61  108
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       90       53       61
  MALE        133       74      108
D2V4, continuous
D2V5, binary
          cls
clus         0   1
  subtype1 156  67
  subtype2  89  38
  subtype3 103  66
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  156   67
  subtype2   89   38
  subtype3  103   66
     clus
vv    subtype1 subtype2 subtype3
  NO       156       89      103
  YES       67       38       66
D2V6, binary
          cls
clus         0   1
  subtype1 118 105
  subtype2  69  58
  subtype3  83  86
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  118  105
  subtype2   69   58
  subtype3   83   86
     clus
vv    subtype1 subtype2 subtype3
  NO       118       69       83
  YES      105       58       86

Clustering(3) Variable = MIR_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1  28 116
  subtype2  35 124
  subtype3  17  57
  subtype4  23  82
subtype1 subtype2 subtype3 subtype4 
     144      159       74      105 
subtype1 subtype2 subtype3 subtype4 
     116      124       57       82 
$subtype1
TCGA-02-0001 TCGA-02-0004 TCGA-02-0006 TCGA-02-0009 TCGA-02-0015 TCGA-02-0023 
        9.14        11.34        18.35        10.59        20.61        20.12 
TCGA-02-0027 TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0051 
       10.36         2.83         3.58        10.72        10.52        15.06 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0070 TCGA-02-0071 
        6.54         2.50        19.86         9.57        25.05         5.49 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0086 TCGA-02-0099 TCGA-02-0115 TCGA-02-0289 
       20.84        27.22         8.81         3.48        15.65        14.20 
TCGA-02-0290 TCGA-02-0324 TCGA-02-0326 TCGA-02-0422 TCGA-02-0451 TCGA-02-2486 
       15.95         7.69         0.16        14.50        16.18        16.18 
TCGA-06-0122 TCGA-06-0147 TCGA-06-0174 TCGA-06-0176 TCGA-06-0184 TCGA-06-0187 
        0.26        16.70         2.20        51.32        40.37        26.33 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0211 TCGA-06-0213 
       10.29        18.28         4.67         2.60        11.84         0.20 
TCGA-06-0214 TCGA-06-0394 TCGA-06-0397 TCGA-06-0412 TCGA-06-0644 TCGA-06-0649 
       12.43        10.29         5.52         8.05        12.33         2.04 
TCGA-06-0745 TCGA-06-0749 TCGA-06-0878 TCGA-06-1800 TCGA-06-2561 TCGA-06-2562 
        5.36         2.14         7.17        26.79         9.27         2.83 
TCGA-06-5414 TCGA-06-5418 TCGA-08-0244 TCGA-08-0246 TCGA-08-0346 TCGA-08-0352 
        8.98         2.73        22.68         3.91         4.34         1.28 
TCGA-08-0354 TCGA-08-0360 TCGA-08-0380 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 
       15.06        11.57        10.85        10.59         0.56         3.48 
TCGA-08-0511 TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 TCGA-08-0521 TCGA-08-0522 
        7.73        11.77         8.52         1.28         4.80        18.25 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0657 TCGA-12-0662 TCGA-12-0776 
       15.98        17.29         5.52         0.10        38.17         9.11 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1094 TCGA-12-1095 
       23.51        27.78         8.91        20.58        11.38        15.85 
TCGA-12-1097 TCGA-12-1599 TCGA-12-3648 TCGA-12-3649 TCGA-12-3652 TCGA-12-5295 
       14.53        25.28        25.78        11.54        34.52        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0789 TCGA-14-1034 TCGA-14-1037 
        3.22         2.01        15.09        11.24        15.95        19.30 
TCGA-14-1452 TCGA-14-1459 TCGA-14-1823 TCGA-14-1829 TCGA-15-0742 TCGA-15-1446 
        7.10        12.43        17.82         7.13         9.86        19.10 
TCGA-16-1045 TCGA-16-1055 TCGA-16-1060 TCGA-19-0955 TCGA-19-0962 TCGA-19-1385 
       29.00         9.90         3.65        11.77         0.43        10.75 
TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-19-1790 TCGA-19-2619 TCGA-19-2621 
        9.07        12.95         4.64         5.03         9.67         1.08 
TCGA-19-2623 TCGA-26-1438 TCGA-26-1439 TCGA-26-5139 TCGA-27-1831 TCGA-27-1832 
        7.53        10.03        13.87         1.58        16.57         9.86 
TCGA-27-1834 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1745 TCGA-28-1751 
       33.14         2.86        14.40        15.75        11.31         7.59 
TCGA-28-1753 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 
        1.18         0.66         4.77         7.30         3.91        15.55 
TCGA-28-5209 TCGA-32-1987 TCGA-32-1991 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
        2.53        14.83        16.93        15.95         7.33         8.84 
TCGA-32-2638 TCGA-32-4213 TCGA-32-4719 TCGA-41-3915 TCGA-76-4927 TCGA-76-4932 
        7.36        11.70        10.85         6.02        17.59        47.93 

$subtype2
TCGA-02-0003 TCGA-02-0007 TCGA-02-0010 TCGA-02-0014 TCGA-02-0016 TCGA-02-0026 
        4.73        23.18        35.41        82.55        55.86        24.59 
TCGA-02-0043 TCGA-02-0048 TCGA-02-0069 TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 
       18.28         3.19        28.70        10.19        89.72        22.72 
TCGA-02-0084 TCGA-02-0087 TCGA-02-0102 TCGA-02-0104 TCGA-02-0114 TCGA-02-0116 
        0.23        57.76        26.99        65.00        99.95        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0430 
       16.54        16.90        10.75        14.47         3.98        10.55 
TCGA-02-0440 TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-06-0125 TCGA-06-0128 
       11.34        16.80        15.29        15.42        47.31        22.72 
TCGA-06-0129 TCGA-06-0137 TCGA-06-0138 TCGA-06-0145 TCGA-06-0146 TCGA-06-0157 
       32.48        23.05        22.16         2.33        20.09         3.19 
TCGA-06-0158 TCGA-06-0173 TCGA-06-0178 TCGA-06-0182 TCGA-06-0185 TCGA-06-0208 
        5.46         0.23        53.98         2.53        37.02         5.46 
TCGA-06-0216 TCGA-06-0237 TCGA-06-0402 TCGA-06-0410 TCGA-06-0646 TCGA-06-0648 
       22.49        10.32         0.26         4.67         4.47         9.63 
TCGA-06-0875 TCGA-06-0879 TCGA-06-2557 TCGA-06-2559 TCGA-06-2563 TCGA-06-2565 
        9.17        22.98         1.08         4.90         8.52         6.81 
TCGA-06-2567 TCGA-06-2570 TCGA-06-5417 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        4.37         9.37         5.10        34.75       108.82         1.74 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0355 TCGA-08-0357 TCGA-08-0375 TCGA-08-0385 
        7.59         3.39        22.52        35.64         9.17         1.02 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-12-0618 
       15.72         3.19        18.44        58.19        10.72         1.61 
TCGA-12-0619 TCGA-12-0670 TCGA-12-0691 TCGA-12-0692 TCGA-12-0707 TCGA-12-0769 
       10.39        25.97         6.08         2.63        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0820 TCGA-12-0821 TCGA-12-0827 
       53.10        43.10         5.49        18.48        10.62        38.76 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1098 TCGA-12-1598 
      127.56         5.82         6.21        30.54         3.98         9.44 
TCGA-12-1600 TCGA-12-3646 TCGA-12-3650 TCGA-12-3653 TCGA-14-0783 TCGA-14-0786 
       13.61        43.20        10.95        11.74         6.18        23.05 
TCGA-14-0787 TCGA-14-0790 TCGA-14-0817 TCGA-14-0865 TCGA-14-1453 TCGA-14-1454 
        2.24        13.74         5.39        16.50         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1821 TCGA-14-1825 TCGA-14-2554 TCGA-14-3477 
        0.92        40.93        17.75         7.63        17.49         3.75 
TCGA-14-4157 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-1047 TCGA-16-1056 
        3.39         9.93        26.07        16.31         0.82        13.35 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0964 TCGA-19-1390 
       18.28        13.97         6.41         8.61         3.39        25.38 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2624 TCGA-19-2629 
        7.13        12.66         3.25         0.13         0.16        16.47 
TCGA-19-2631 TCGA-26-1440 TCGA-26-5133 TCGA-26-5135 TCGA-26-5136 TCGA-27-1833 
        7.00         9.73        14.86         8.84         1.22        18.25 
TCGA-27-1835 TCGA-27-1837 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-28-1746 
       21.30        14.04        10.39        10.39        16.08         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-2514 TCGA-28-5207 TCGA-28-5215 TCGA-28-5220 
        2.53         9.17         5.26         9.04         7.79        10.49 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-2634 TCGA-32-4208 TCGA-32-4209 
       15.35        21.07         0.49         8.88        13.15        11.11 
TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2575 TCGA-41-3393 TCGA-41-4097 
        3.68        12.59         5.42         9.53         4.44         0.20 
TCGA-76-4925 TCGA-76-4929 TCGA-76-4931 
        4.77         3.65         9.14 

$subtype3
TCGA-02-0011 TCGA-02-0024 TCGA-02-0052 TCGA-02-0058 TCGA-02-0060 TCGA-02-0085 
       20.71        53.06        12.59         8.35         6.02        51.29 
TCGA-02-0089 TCGA-02-0321 TCGA-02-0325 TCGA-02-0330 TCGA-02-0338 TCGA-02-0339 
       16.93         9.86        10.62        15.91        10.59        12.39 
TCGA-02-0439 TCGA-02-0446 TCGA-02-2470 TCGA-06-0126 TCGA-06-0162 TCGA-06-0171 
        0.66         9.24        12.92         0.10         2.56        13.02 
TCGA-06-0177 TCGA-06-0179 TCGA-06-0195 TCGA-06-0219 TCGA-06-0221 TCGA-06-0241 
        1.97        19.00         7.04         0.33        18.02        14.96 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0686 TCGA-06-0747 TCGA-06-0750 TCGA-06-0882 
        0.16        35.01         9.37         2.70         0.92         5.42 
TCGA-06-0939 TCGA-06-1801 TCGA-06-2558 TCGA-06-2564 TCGA-06-2566 TCGA-06-5415 
       20.94         8.65         0.76         5.95         5.98         8.55 
TCGA-06-5416 TCGA-08-0347 TCGA-08-0348 TCGA-08-0351 TCGA-08-0359 TCGA-08-0373 
        6.71        13.78        10.39        53.79         0.95         4.41 
TCGA-12-0780 TCGA-12-1099 TCGA-12-1597 TCGA-14-0812 TCGA-14-0866 TCGA-14-0867 
       14.27         3.39        14.04         3.25        26.33         2.04 
TCGA-14-1451 TCGA-14-1458 TCGA-14-1827 TCGA-14-3476 TCGA-15-1449 TCGA-16-0846 
       23.11         6.12         5.88         0.39         5.49         3.91 
TCGA-16-0861 TCGA-19-0963 TCGA-19-1387 TCGA-19-1392 TCGA-19-1788 TCGA-19-2620 
        4.27        14.27         5.95         3.48         3.65         4.87 
TCGA-26-1799 TCGA-26-5134 TCGA-27-1836 TCGA-27-2518 TCGA-28-1752 TCGA-28-1756 
        9.37         5.49        30.05        24.72         8.45         2.83 
TCGA-28-2506 TCGA-28-5219 TCGA-32-2495 TCGA-41-2573 TCGA-41-3392 TCGA-76-4926 
        6.74         8.52        14.99         8.94         0.99         4.54 
TCGA-76-4934 TCGA-76-4935 
        2.53        10.78 

$subtype4
TCGA-02-0021 TCGA-02-0025 TCGA-02-0028 TCGA-02-0034 TCGA-02-0047 TCGA-02-0064 
       77.62        42.74        90.58        14.14        14.70        19.73 
TCGA-02-0068 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0266 
       26.43        11.67        17.65        23.15        92.61        17.69 
TCGA-02-0285 TCGA-02-0317 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0432 
       13.87        12.23        25.71         4.37        25.12        47.11 
TCGA-02-0456 TCGA-06-0124 TCGA-06-0127 TCGA-06-0130 TCGA-06-0133 TCGA-06-0139 
        3.35         4.04         3.55        10.52        14.07        10.75 
TCGA-06-0141 TCGA-06-0143 TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        9.21        11.74         7.82        11.80        12.79         8.65 
TCGA-06-0156 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0175 
        5.39        56.84         5.29        19.04         3.12         2.73 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0210 TCGA-06-0238 TCGA-06-0409 TCGA-06-0645 
       28.47        14.93         4.96        11.80        70.52         3.22 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0876 TCGA-06-0877 TCGA-06-0881 TCGA-06-1084 
       22.29        19.53         8.91         6.71         5.85         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1802 TCGA-06-1805 TCGA-06-2569 TCGA-08-0353 
        6.35         3.58         7.86         4.18         0.43         6.41 
TCGA-08-0356 TCGA-08-0358 TCGA-08-0392 TCGA-08-0524 TCGA-12-0616 TCGA-12-0620 
       14.70        19.50         0.30         6.51        14.40         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0688 TCGA-12-0703 TCGA-12-0778 TCGA-12-1092 
        7.17        65.88        24.13        18.08        14.83        21.63 
TCGA-12-1093 TCGA-12-1096 TCGA-12-1602 TCGA-12-3644 TCGA-12-3651 TCGA-14-0813 
       11.97         9.11         6.38        59.41        11.77         1.35 
TCGA-14-0871 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1794 TCGA-14-1795 
       28.90         1.12         3.75        32.02         0.99         1.94 
TCGA-14-2555 TCGA-15-1447 TCGA-19-0957 TCGA-19-2625 TCGA-19-4068 TCGA-26-1443 
        7.96        53.19        21.86         4.08         4.47         7.10 
TCGA-26-5132 TCGA-27-1830 TCGA-27-1838 TCGA-27-2524 TCGA-28-1750 TCGA-28-1755 
        9.40         4.80        11.51         7.59         8.32         1.51 
TCGA-28-1757 TCGA-28-1760 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 
        0.13         4.70         9.80        14.20        13.64         4.21 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1982 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 
        0.10        15.85         4.67        12.69        12.23        20.78 
TCGA-41-2571 TCGA-41-2572 TCGA-76-4928 
        0.85        13.35         3.09 

subtype1 subtype2 subtype3 subtype4 
    0.10     0.13     0.10     0.10 
subtype1 subtype2 subtype3 subtype4 
   51.32   127.56    53.79    92.61 
subtype1 subtype2 subtype3 subtype4 
  10.555   10.550    8.400   10.750 
[1] "0.1 - 51.3 (10.6)"  "0.1 - 127.6 (10.6)" "0.1 - 53.8 (8.4)"  
[4] "0.1 - 92.6 (10.8)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [13] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
 [67] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
 [97] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[109] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[115] "subtype2" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[151] "subtype3" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[169] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
[175] "subtype1" "subtype2" "subtype4" "subtype3" "subtype3" "subtype4"
[181] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[187] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[217] "subtype1" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[223] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[247] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[253] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[259] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
[271] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[283] "subtype4" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[289] "subtype1" "subtype2" "subtype4" "subtype4" "subtype2" "subtype1"
[295] "subtype1" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype2"
[313] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[319] "subtype4" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[331] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[337] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[343] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[355] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[361] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[367] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[379] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[385] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
[391] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[397] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[403] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype2"
[409] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[415] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype3"
[421] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype1"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[439] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[451] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[457] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[469] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[475] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[481] "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [13] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
 [67] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
 [97] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[109] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[115] "subtype2" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[151] "subtype3" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[169] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
[175] "subtype1" "subtype2" "subtype4" "subtype3" "subtype3" "subtype4"
[181] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[187] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[217] "subtype1" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[223] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[247] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[253] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[259] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
[271] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[283] "subtype4" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[289] "subtype1" "subtype2" "subtype4" "subtype4" "subtype2" "subtype1"
[295] "subtype1" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype2"
[313] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[319] "subtype4" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[331] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[337] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[343] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[355] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[361] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[367] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[379] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[385] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
[391] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[397] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[403] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype2"
[409] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[415] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype3"
[421] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype1"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[439] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[451] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[457] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[469] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[475] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[481] "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [13] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
 [67] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
 [97] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[109] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[115] "subtype2" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[151] "subtype3" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[169] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
[175] "subtype1" "subtype2" "subtype4" "subtype3" "subtype3" "subtype4"
[181] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[187] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[217] "subtype1" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[223] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[247] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[253] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[259] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
[271] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[283] "subtype4" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[289] "subtype1" "subtype2" "subtype4" "subtype4" "subtype2" "subtype1"
[295] "subtype1" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype2"
[313] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[319] "subtype4" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[331] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[337] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[343] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[355] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[361] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[367] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[379] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[385] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
[391] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[397] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[403] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype2"
[409] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[415] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype3"
[421] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype1"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[439] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[451] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[457] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[469] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[475] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[481] "subtype3" "subtype3"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 56 88
  subtype2 68 91
  subtype3 26 48
  subtype4 36 69
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   56   88
  subtype2   68   91
  subtype3   26   48
  subtype4   36   69
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       56       68       26       36
  MALE         88       91       48       69
D3V4, continuous
D3V5, binary
          cls
clus         0   1
  subtype1 102  42
  subtype2 108  51
  subtype3  46  28
  subtype4  71  34
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  102   42
  subtype2  108   51
  subtype3   46   28
  subtype4   71   34
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO       102      108       46       71
  YES       42       51       28       34
D3V6, binary
          cls
clus        0  1
  subtype1 75 69
  subtype2 78 81
  subtype3 39 35
  subtype4 56 49
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   75   69
  subtype2   78   81
  subtype3   39   35
  subtype4   56   49
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        75       78       39       56
  YES       69       81       35       49

Clustering(4) Variable = MIR_CHIERARCHICAL
D4V1, survival
          sevent
clus2        0   1
  subtype1  33 137
  subtype2  35 145
  subtype3  35  97
subtype1 subtype2 subtype3 
     170      180      132 
subtype1 subtype2 subtype3 
     137      145       97 
$subtype1
TCGA-02-0004 TCGA-02-0006 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       11.34        18.35        77.62        20.12        53.06        42.74 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0039 TCGA-02-0047 TCGA-02-0051 
        2.83        14.14         3.58        10.52        14.70        15.06 
TCGA-02-0055 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0085 
        2.50         9.57        19.73        26.43        25.05        51.29 
TCGA-02-0086 TCGA-02-0089 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        8.81        16.93        11.67        17.65        23.15        92.61 
TCGA-02-0266 TCGA-02-0285 TCGA-02-0290 TCGA-02-0317 TCGA-02-0332 TCGA-02-0333 
       17.69        13.87        15.95        12.23        25.71         4.37 
TCGA-02-0337 TCGA-02-0446 TCGA-02-0456 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 
       25.12         9.24         3.35        16.18         0.26         4.04 
TCGA-06-0127 TCGA-06-0130 TCGA-06-0133 TCGA-06-0139 TCGA-06-0141 TCGA-06-0143 
        3.55        10.52        14.07        10.75         9.21        11.74 
TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0156 TCGA-06-0164 
        7.82        11.80        12.79         8.65         5.39        56.84 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0175 TCGA-06-0176 TCGA-06-0188 TCGA-06-0189 
       19.04         3.12         2.73        51.32        28.47        14.93 
TCGA-06-0190 TCGA-06-0194 TCGA-06-0197 TCGA-06-0210 TCGA-06-0219 TCGA-06-0238 
       10.29         4.67         2.60         4.96         0.33        11.80 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 
       10.29         5.52        70.52         8.05         0.16        12.33 
TCGA-06-0645 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0876 
        3.22        22.29        19.53         5.36         2.70         8.91 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0881 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
        6.71         7.17         5.85         7.43         6.35        26.79 
TCGA-06-1802 TCGA-06-2563 TCGA-06-2566 TCGA-06-2569 TCGA-06-5415 TCGA-06-5418 
        7.86         8.52         5.98         0.43         8.55         2.73 
TCGA-08-0346 TCGA-08-0353 TCGA-08-0354 TCGA-08-0356 TCGA-08-0358 TCGA-08-0359 
        4.34         6.41        15.06        14.70        19.50         0.95 
TCGA-08-0373 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0521 TCGA-08-0522 
        4.41         0.30         0.56        11.77         4.80        18.25 
TCGA-12-0616 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0703 TCGA-12-0776 
       14.40         5.95         7.17        65.88        18.08         9.11 
TCGA-12-0778 TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1092 TCGA-12-1093 
       14.83        23.51         8.91        20.58        21.63        11.97 
TCGA-12-1094 TCGA-12-1096 TCGA-12-1602 TCGA-12-3644 TCGA-12-3651 TCGA-12-5295 
       11.38         9.11         6.38        59.41        11.77        13.08 
TCGA-14-0789 TCGA-14-0813 TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       11.24         1.35        26.33        28.90        15.95        19.30 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1794 TCGA-14-2555 TCGA-14-3476 
        1.12         3.75        32.02         0.99         7.96         0.39 
TCGA-16-1060 TCGA-19-0964 TCGA-19-1385 TCGA-19-1389 TCGA-19-1790 TCGA-19-2625 
        3.65         3.39        10.75         4.64         5.03         4.08 
TCGA-19-4068 TCGA-26-1439 TCGA-26-1443 TCGA-26-5132 TCGA-26-5134 TCGA-27-1830 
        4.47        13.87         7.10         9.40         5.49         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1836 TCGA-27-1838 TCGA-27-2524 TCGA-27-2527 
       16.57         9.86        30.05        11.51         7.59        14.40 
TCGA-27-2528 TCGA-28-1745 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 
       15.75        11.31         7.59         1.18         1.51         0.13 
TCGA-28-1760 TCGA-28-2513 TCGA-28-5213 TCGA-28-5216 TCGA-28-5218 TCGA-32-1977 
        4.70         7.30         9.80        13.64         4.21         0.10 
TCGA-32-1978 TCGA-32-1982 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 
       15.85         4.67        12.69        12.23        20.78        15.95 
TCGA-32-2632 TCGA-32-2638 TCGA-41-2571 TCGA-41-2572 TCGA-76-4926 TCGA-76-4927 
        8.84         7.36         0.85        13.35         4.54        17.59 
TCGA-76-4928 TCGA-76-4934 
        3.09         2.53 

$subtype2
TCGA-02-0001 TCGA-02-0007 TCGA-02-0009 TCGA-02-0016 TCGA-02-0027 TCGA-02-0038 
        9.14        23.18        10.59        55.86        10.36        10.72 
TCGA-02-0043 TCGA-02-0054 TCGA-02-0058 TCGA-02-0060 TCGA-02-0075 TCGA-02-0079 
       18.28         6.54         8.35         6.02        20.84        27.22 
TCGA-02-0083 TCGA-02-0099 TCGA-02-0102 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 
       22.72         3.48        26.99        15.65        48.95        16.90 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0289 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 
       10.75        14.47        14.20         7.69         0.16        15.91 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0451 TCGA-02-2485 TCGA-06-0125 TCGA-06-0137 
       14.50        10.55        16.18        15.42        47.31        23.05 
TCGA-06-0138 TCGA-06-0145 TCGA-06-0147 TCGA-06-0157 TCGA-06-0162 TCGA-06-0171 
       22.16         2.33        16.70         3.19         2.56        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
        0.23         2.20         2.53        40.37        37.02        26.33 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0208 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
       18.28         7.04         5.46        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0237 TCGA-06-0402 TCGA-06-0646 TCGA-06-0649 TCGA-06-0749 
       22.49        10.32         0.26         4.47         2.04         2.14 
TCGA-06-0750 TCGA-06-0879 TCGA-06-2557 TCGA-06-2559 TCGA-06-2562 TCGA-06-2564 
        0.92        22.98         1.08         4.90         2.83         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-5414 TCGA-08-0244 TCGA-08-0246 TCGA-08-0345 
        6.81         4.37         8.98        22.68         3.91         1.74 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0355 TCGA-08-0357 TCGA-08-0360 TCGA-08-0380 
        7.59         1.28        22.52        35.64        11.57        10.85 
TCGA-08-0390 TCGA-08-0510 TCGA-08-0511 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
       10.59         3.48         7.73         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0619 
        1.28        10.72        15.98        17.29         5.52        10.39 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0707 
        0.10        38.17        24.13         6.08         2.63        28.37 
TCGA-12-0769 TCGA-12-0775 TCGA-12-0780 TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 
       12.43         5.49        14.27        10.62        27.78        38.76 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1097 TCGA-12-1098 
      127.56         5.82         6.21        30.54        14.53         3.98 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 TCGA-12-3652 TCGA-12-3653 
       25.28        13.61        25.78        11.54        34.52        11.74 
TCGA-12-5299 TCGA-14-0736 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 
        3.22        15.09         6.18        23.05         2.24        13.74 
TCGA-14-0817 TCGA-14-1452 TCGA-14-1453 TCGA-14-1823 TCGA-14-1827 TCGA-14-1829 
        5.39         7.10         1.15        17.82         5.88         7.13 
TCGA-14-2554 TCGA-15-0742 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       17.49         9.86         9.93        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1062 TCGA-19-0955 TCGA-19-0962 TCGA-19-1386 TCGA-19-1388 
       13.35        18.28        11.77         0.43         9.07        12.95 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 
        7.13        12.66         3.25         0.13         9.67         1.08 
TCGA-19-2623 TCGA-19-2629 TCGA-19-2631 TCGA-26-1438 TCGA-26-1440 TCGA-26-5136 
        7.53        16.47         7.00        10.03         9.73         1.22 
TCGA-26-5139 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-2519 TCGA-27-2523 
        1.58        18.25        33.14        21.30        10.39        16.08 
TCGA-27-2526 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-2502 TCGA-28-2506 
        2.86         2.53         9.17         8.32         0.66         6.74 
TCGA-28-2509 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        4.77         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5220 TCGA-32-1987 TCGA-32-2616 TCGA-32-4209 
       14.20         7.79        10.49        14.83         7.33        11.11 
TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
       12.59        11.70         5.42         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-76-4925 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        6.02         0.20         4.77         3.65         9.14        47.93 

$subtype3
TCGA-02-0003 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0026 
        4.73        35.41        20.71        82.55        20.61        24.59 
TCGA-02-0028 TCGA-02-0048 TCGA-02-0052 TCGA-02-0057 TCGA-02-0069 TCGA-02-0071 
       90.58         3.19        12.59        19.86        28.70         5.49 
TCGA-02-0074 TCGA-02-0080 TCGA-02-0084 TCGA-02-0087 TCGA-02-0104 TCGA-02-0114 
       10.19        89.72         0.23        57.76        65.00        99.95 
TCGA-02-0258 TCGA-02-0281 TCGA-02-0321 TCGA-02-0325 TCGA-02-0338 TCGA-02-0339 
       16.54         3.98         9.86        10.62        10.59        12.39 
TCGA-02-0432 TCGA-02-0439 TCGA-02-0440 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
       47.11         0.66        11.34        16.80        12.92        15.29 
TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 TCGA-06-0146 TCGA-06-0158 TCGA-06-0166 
        0.10        22.72        32.48        20.09         5.46         5.29 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0221 TCGA-06-0241 TCGA-06-0410 
        1.97        53.98        19.00        18.02        14.96         4.67 
TCGA-06-0414 TCGA-06-0648 TCGA-06-0686 TCGA-06-0875 TCGA-06-0882 TCGA-06-0939 
       35.01         9.63         9.37         9.17         5.42        20.94 
TCGA-06-1087 TCGA-06-1801 TCGA-06-1805 TCGA-06-2558 TCGA-06-2561 TCGA-06-2570 
        3.58         8.65         4.18         0.76         9.27         9.37 
TCGA-06-5416 TCGA-06-5417 TCGA-08-0245 TCGA-08-0344 TCGA-08-0347 TCGA-08-0348 
        6.71         5.10        34.75       108.82        13.78        10.39 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0375 TCGA-08-0385 TCGA-08-0386 TCGA-08-0389 
        3.39        53.79         9.17         1.02        15.72         3.19 
TCGA-08-0524 TCGA-12-0618 TCGA-12-0670 TCGA-12-0772 TCGA-12-0773 TCGA-12-0820 
        6.51         1.61        25.97        53.10        43.10        18.48 
TCGA-12-1095 TCGA-12-1099 TCGA-12-1597 TCGA-12-1598 TCGA-12-3646 TCGA-12-3650 
       15.85         3.39        14.04         9.44        43.20        10.95 
TCGA-12-5301 TCGA-14-0812 TCGA-14-0865 TCGA-14-0867 TCGA-14-1451 TCGA-14-1454 
        2.01         3.25        16.50         2.04        23.11        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 
        0.92        40.93         6.12        12.43         1.94        17.75 
TCGA-14-1825 TCGA-14-3477 TCGA-14-4157 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        7.63         3.75         3.39        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1063 TCGA-16-1460 
        3.91        26.07        16.31         4.27        13.97         6.41 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-1387 TCGA-19-1390 TCGA-19-1392 
       21.86         8.61        14.27         5.95        25.38         3.48 
TCGA-19-1788 TCGA-19-2620 TCGA-19-2624 TCGA-26-1799 TCGA-26-5133 TCGA-26-5135 
        3.65         4.87         0.16         9.37        14.86         8.84 
TCGA-27-1837 TCGA-27-2518 TCGA-27-2521 TCGA-28-1746 TCGA-28-1752 TCGA-28-1756 
       14.04        24.72        10.39         0.20         8.45         2.83 
TCGA-28-5219 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1991 TCGA-32-2495 
        8.52        15.35        21.07         0.49        16.93        14.99 
TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-32-4719 TCGA-41-2573 TCGA-76-4935 
        8.88        13.15         3.68        10.85         8.94        10.78 

subtype1 subtype2 subtype3 
     0.1      0.1      0.1 
subtype1 subtype2 subtype3 
   92.61   127.56   108.82 
subtype1 subtype2 subtype3 
    9.83     9.98    10.70 
[1] "0.1 - 92.6 (9.8)"   "0.1 - 127.6 (10.0)" "0.1 - 108.8 (10.7)"
  [1] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[235] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[253] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[265] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[325] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[331] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[337] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[355] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[367] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[385] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[391] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[409] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[415] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[421] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[427] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[439] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[451] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[463] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[469] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[481] "subtype1" "subtype3"
  [1] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[235] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[253] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[265] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[325] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[331] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[337] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[355] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[367] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[385] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[391] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[409] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[415] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[421] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[427] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[439] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[451] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[463] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[469] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[481] "subtype1" "subtype3"
  [1] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[235] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[253] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[265] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[325] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[331] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[337] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[355] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[367] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[385] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[391] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[409] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[415] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[421] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[427] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[439] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[451] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[463] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[469] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[481] "subtype1" "subtype3"
D4V2, continuous
D4V3, binary
          cls
clus         0   1
  subtype1  58 112
  subtype2  80 100
  subtype3  48  84
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   58  112
  subtype2   80  100
  subtype3   48   84
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       58       80       48
  MALE        112      100       84
D4V4, continuous
D4V5, binary
          cls
clus         0   1
  subtype1 113  57
  subtype2 121  59
  subtype3  93  39
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  113   57
  subtype2  121   59
  subtype3   93   39
     clus
vv    subtype1 subtype2 subtype3
  NO       113      121       93
  YES       57       59       39
D4V6, binary
          cls
clus        0  1
  subtype1 88 82
  subtype2 92 88
  subtype3 68 64
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   88   82
  subtype2   92   88
  subtype3   68   64
     clus
vv    subtype1 subtype2 subtype3
  NO        88       92       68
  YES       82       88       64

Clustering(5) Variable = CN_CNMF
D5V1, survival
          sevent
clus2        0   1
  subtype1  34 125
  subtype2  50 160
  subtype3  49 126
subtype1 subtype2 subtype3 
     159      210      175 
subtype1 subtype2 subtype3 
     125      160      126 
$subtype1
TCGA-02-0001 TCGA-02-0007 TCGA-02-0010 TCGA-02-0024 TCGA-02-0039 TCGA-02-0048 
        9.14        23.18        35.41        53.06        10.52         3.19 
TCGA-02-0051 TCGA-02-0074 TCGA-02-0086 TCGA-02-0099 TCGA-02-0106 TCGA-02-0113 
       15.06        10.19         8.81         3.48        11.67        92.61 
TCGA-02-0258 TCGA-02-0266 TCGA-02-0271 TCGA-02-0281 TCGA-02-0324 TCGA-02-0330 
       16.54        17.69        14.47         3.98         7.69        15.91 
TCGA-02-0440 TCGA-02-0446 TCGA-02-2466 TCGA-06-0138 TCGA-06-0149 TCGA-06-0152 
       11.34         9.24        16.80        22.16         7.82        11.80 
TCGA-06-0162 TCGA-06-0166 TCGA-06-0168 TCGA-06-0171 TCGA-06-0173 TCGA-06-0177 
        2.56         5.29        19.04        13.02         0.23         1.97 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0188 TCGA-06-0195 TCGA-06-0206 TCGA-06-0209 
        2.53        40.37        28.47         7.04         6.44         3.88 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0241 
       12.43        22.49         0.33        18.02        11.80        14.96 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0644 TCGA-06-0646 TCGA-06-0649 
       70.52         4.67         8.05        12.33         4.47         2.04 
TCGA-06-0686 TCGA-06-0750 TCGA-06-0875 TCGA-06-0878 TCGA-06-1087 TCGA-06-1804 
        9.37         0.92         9.17         7.17         3.58        13.58 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-5408 TCGA-06-5411 
        1.08         0.76         4.90         9.27        11.21         8.35 
TCGA-06-5856 TCGA-06-5859 TCGA-06-6390 TCGA-06-6694 TCGA-06-6699 TCGA-08-0245 
        3.75         4.54         5.36         7.36         1.55        34.75 
TCGA-08-0349 TCGA-08-0520 TCGA-12-0615 TCGA-12-0616 TCGA-12-0619 TCGA-12-0653 
        7.59        10.72        14.01        14.40        10.39        10.52 
TCGA-12-0654 TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 TCGA-12-0772 TCGA-12-0821 
        7.17        38.17         6.08         2.63        53.10        10.62 
TCGA-12-0826 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1096 TCGA-12-1098 
       27.78       127.56         5.82        30.54         9.11         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1602 TCGA-12-3646 TCGA-12-3651 TCGA-12-3653 
        3.39         9.44         6.38        43.20        11.77        11.74 
TCGA-12-5295 TCGA-14-0736 TCGA-14-0783 TCGA-14-0813 TCGA-14-0817 TCGA-14-0865 
       13.08        15.09         6.18         1.35         5.39        16.50 
TCGA-14-0871 TCGA-14-1396 TCGA-14-1451 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       28.90         1.12        23.11         1.15        30.15         0.92 
TCGA-14-1823 TCGA-14-1825 TCGA-14-3477 TCGA-15-0742 TCGA-15-1449 TCGA-16-0848 
       17.82         7.63         3.75         9.86         5.49         9.93 
TCGA-16-0861 TCGA-16-1045 TCGA-19-0957 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 
        4.27        29.00        21.86        25.38         3.48        12.66 
TCGA-19-1791 TCGA-19-2623 TCGA-19-2629 TCGA-19-5947 TCGA-19-5960 TCGA-26-1438 
        0.13         7.53        16.47         6.64         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-5134 TCGA-26-5135 TCGA-27-1830 TCGA-27-1832 
       13.87         9.73         5.49         8.84         4.80         9.86 
TCGA-27-1834 TCGA-27-1835 TCGA-27-2519 TCGA-28-1746 TCGA-28-1750 TCGA-28-2506 
       33.14        21.30        10.39         0.20         8.32         6.74 
TCGA-28-2509 TCGA-28-5207 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5220 
        4.77         9.04         7.79        13.64         4.21        10.49 
TCGA-32-1976 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-4208 
        0.49        15.95         7.33         8.84         8.88        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 
        3.68        12.59         5.42         0.85         8.94         9.53 
TCGA-41-3392 TCGA-41-5651 TCGA-74-6577 TCGA-74-6584 TCGA-76-4929 TCGA-76-4934 
        0.99        11.54         4.31         7.46         3.65         2.53 
TCGA-76-4935 TCGA-76-6285 TCGA-76-6286 
       10.78         8.32        20.94 

$subtype2
TCGA-02-0003 TCGA-02-0009 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
        4.73        10.59        20.61        55.86        77.62        20.12 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0064 TCGA-02-0068 
        3.58        10.72        18.28         6.84        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0089 TCGA-02-0102 TCGA-02-0116 TCGA-02-0260 
       25.05         5.49        16.93        26.99        48.95        16.90 
TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0333 
       10.75        13.87        14.20        15.95        12.23         4.37 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0451 TCGA-02-2485 TCGA-02-2486 TCGA-06-0122 
       14.50        10.55        16.18        15.42        16.18         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0133 TCGA-06-0137 TCGA-06-0145 
        4.04        47.31         0.10        14.07        23.05         2.33 
TCGA-06-0148 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0174 
        9.80        12.79         8.65         3.19         5.46         2.20 
TCGA-06-0175 TCGA-06-0185 TCGA-06-0187 TCGA-06-0208 TCGA-06-0211 TCGA-06-0237 
        2.73        37.02        26.33         5.46        11.84        10.32 
TCGA-06-0402 TCGA-06-0645 TCGA-06-0648 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        0.26         3.22         9.63        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 TCGA-06-1800 TCGA-06-1801 
        2.70         8.91         6.71        22.98        26.79         8.65 
TCGA-06-1802 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 
        7.86         2.83         8.52         5.95         6.81         4.37 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-6388 TCGA-06-6693 
        8.81         8.98         8.55         2.73         3.91         0.49 
TCGA-06-6695 TCGA-08-0244 TCGA-08-0348 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 
        8.28        22.68        10.39         1.28        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0386 
       14.70        35.64        19.50         0.95         9.17        15.72 
TCGA-08-0389 TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 TCGA-08-0525 TCGA-08-0529 
        3.19         3.48         8.52         1.28        15.98        17.29 
TCGA-08-0531 TCGA-12-0618 TCGA-12-0620 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 
        5.52         1.61         5.95        65.88         0.10        25.97 
TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0778 TCGA-12-0780 
       24.13        18.08        28.37        12.43        14.83        14.27 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0828 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 
       24.76        18.48         8.91        11.38        15.85        14.53 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.28        13.61        59.41        25.78        11.54        10.95 
TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       34.52         3.22         2.01        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 
       13.74        26.33        15.95         1.38         3.75        32.02 
TCGA-14-1450 TCGA-14-1452 TCGA-14-1459 TCGA-14-1795 TCGA-14-1827 TCGA-14-1829 
       58.78         7.10        12.43         1.94         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-15-1446 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       17.49         7.96        19.10         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
        3.65        18.28        13.97         0.43        14.27         3.39 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1786 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 
        9.07         5.95         7.13         3.25         9.67         4.87 
TCGA-19-2621 TCGA-19-2624 TCGA-19-2631 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        1.08         0.16         7.00        11.28         8.02        18.64 
TCGA-19-5954 TCGA-19-5959 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5136 
        7.96         5.29         7.10         9.37         9.40         1.22 
TCGA-26-5139 TCGA-27-1831 TCGA-27-1833 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
        1.58        16.57        18.25        14.04        11.51        24.72 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 
       16.08         7.59         2.86        15.75         2.53         9.17 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 
        1.18         1.51         0.13         5.26         3.91        15.55 
TCGA-28-5209 TCGA-28-5214 TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 TCGA-32-1978 
        2.53        14.20         8.52         5.42        15.35        15.85 
TCGA-32-1979 TCGA-32-1982 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2638 
       19.50         4.67        16.93        20.78        14.99         7.36 
TCGA-32-4213 TCGA-32-4719 TCGA-41-2572 TCGA-41-3393 TCGA-74-6573 TCGA-74-6578 
       11.70        10.85        13.35         4.44         3.45        14.33 
TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4931 TCGA-76-6191 TCGA-76-6280 
        8.22         4.77         4.54         9.14        16.67        11.38 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        4.83         5.03         0.23         1.61        17.69         0.07 

$subtype3
TCGA-02-0006 TCGA-02-0011 TCGA-02-0014 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 
       18.35        20.71        82.55        42.74        24.59        10.36 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0047 TCGA-02-0052 TCGA-02-0054 
       90.58         2.83        14.14        14.70        12.59         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0069 
        2.50        19.86         8.35         9.57         6.02        28.70 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0087 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 
       57.76        65.00        17.65        23.15        99.95        15.65 
TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 
        9.86        10.62         0.16        25.71        25.12        10.59 
TCGA-02-0339 TCGA-02-0432 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-06-0127 
       12.39        47.11         3.35        12.92        15.29         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0139 TCGA-06-0141 
       22.72        32.48        10.52        18.74        10.75         9.21 
TCGA-06-0143 TCGA-06-0146 TCGA-06-0147 TCGA-06-0164 TCGA-06-0169 TCGA-06-0176 
       11.74        20.09        16.70        56.84         3.12        51.32 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       53.98        19.00        14.93        10.29        18.28         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0210 TCGA-06-0213 TCGA-06-0394 TCGA-06-0397 
        2.60         0.39         4.96         0.20        10.29         5.52 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0650 TCGA-06-0749 TCGA-06-0881 TCGA-06-0882 
        0.16        35.01        23.57         2.14         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1805 TCGA-06-2566 TCGA-06-2569 
       20.94         7.43         6.35         4.18         5.98         0.43 
TCGA-06-2570 TCGA-06-5410 TCGA-06-5412 TCGA-06-5416 TCGA-06-5858 TCGA-06-6389 
        9.37         3.52         4.54         6.71         6.12         7.76 
TCGA-06-6391 TCGA-06-6697 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-08-0246 
        1.45        12.85         4.77         4.77         4.96         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0350 TCGA-08-0351 
      108.82         1.74         4.34        13.78         3.39        53.79 
TCGA-08-0353 TCGA-08-0380 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 
        6.41        10.85        10.59         0.30         0.56        11.77 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 TCGA-12-0773 TCGA-12-0775 
       18.44        58.19         4.80         6.51        43.10         5.49 
TCGA-12-0776 TCGA-12-0818 TCGA-12-0822 TCGA-12-0827 TCGA-12-0829 TCGA-12-1090 
        9.11        91.73        23.51        38.76        20.58         6.21 
TCGA-12-1092 TCGA-12-1093 TCGA-14-0740 TCGA-14-0781 TCGA-14-0812 TCGA-14-0862 
       21.63        11.97        11.97         0.95         3.25         2.89 
TCGA-14-0867 TCGA-14-1037 TCGA-14-1043 TCGA-14-1456 TCGA-14-1458 TCGA-14-1794 
        2.04        19.30         0.79        40.93         6.12         0.99 
TCGA-14-1821 TCGA-14-4157 TCGA-15-1447 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 
       17.75         3.39        53.19         3.91        26.07        16.31 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0960 TCGA-19-1385 TCGA-19-1388 TCGA-19-1389 
        6.41        11.77         8.61        10.75        12.95         4.64 
TCGA-19-2625 TCGA-19-4065 TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
        4.08         7.04         4.73         1.78         6.51         5.39 
TCGA-26-1442 TCGA-26-5133 TCGA-26-6173 TCGA-26-6174 TCGA-27-1836 TCGA-27-2521 
       31.33        14.86         7.92         2.30        30.05        10.39 
TCGA-27-2527 TCGA-28-1751 TCGA-28-1752 TCGA-28-1756 TCGA-28-2502 TCGA-28-2513 
       14.40         7.59         8.45         2.83         0.66         7.30 
TCGA-28-5211 TCGA-28-5213 TCGA-32-1973 TCGA-32-1977 TCGA-32-1980 TCGA-32-1986 
       11.77         9.80        21.07         0.10         1.18        12.69 
TCGA-32-1987 TCGA-32-2491 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6575 
       14.83        12.23         6.02         0.20         7.73        17.52 
TCGA-76-4928 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6662 TCGA-76-6663 
        3.09         3.29         2.70        17.06         9.24         7.69 
TCGA-76-6664 
        7.76 

subtype1 subtype2 subtype3 
    0.13     0.07     0.10 
subtype1 subtype2 subtype3 
  127.56    77.62   108.82 
subtype1 subtype2 subtype3 
    9.14     9.85    10.29 
[1] "0.1 - 127.6 (9.1)"  "0.1 - 77.6 (9.9)"   "0.1 - 108.8 (10.3)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[145] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[211] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[217] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[223] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[271] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[277] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[283] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[289] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[295] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[313] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[319] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[325] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[331] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[337] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[343] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[349] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[355] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[361] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[367] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[373] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[385] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[391] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[397] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[403] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[409] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[421] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[427] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[433] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[439] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[445] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[451] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[457] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[463] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[469] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[475] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[481] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[487] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[493] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[499] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[505] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[511] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[517] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[523] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[529] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[535] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[541] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[145] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[211] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[217] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[223] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[271] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[277] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[283] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[289] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[295] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[313] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[319] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[325] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[331] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[337] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[343] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[349] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[355] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[361] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[367] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[373] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[385] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[391] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[397] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[403] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[409] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[421] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[427] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[433] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[439] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[445] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[451] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[457] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[463] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[469] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[475] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[481] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[487] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[493] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[499] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[505] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[511] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[517] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[523] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[529] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[535] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[541] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[145] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[211] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[217] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[223] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[271] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[277] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[283] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[289] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[295] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[313] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[319] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[325] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[331] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[337] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[343] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[349] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[355] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[361] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[367] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[373] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[385] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[391] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[397] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[403] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[409] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[421] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[427] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[433] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[439] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[445] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[451] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[457] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[463] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[469] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[475] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[481] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[487] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[493] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[499] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[505] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[511] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[517] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[523] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[529] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[535] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[541] "subtype3" "subtype2" "subtype2" "subtype2"
D5V2, continuous
D5V3, binary
          cls
clus         0   1
  subtype1  68  91
  subtype2  77 133
  subtype3  70 105
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   68   91
  subtype2   77  133
  subtype3   70  105
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       68       77       70
  MALE         91      133      105
D5V4, continuous
D5V5, binary
          cls
clus         0   1
  subtype1  98  61
  subtype2 144  66
  subtype3 127  48
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   98   61
  subtype2  144   66
  subtype3  127   48
     clus
vv    subtype1 subtype2 subtype3
  NO        98      144      127
  YES       61       66       48
D5V6, binary
          cls
clus         0   1
  subtype1  76  83
  subtype2 114  96
  subtype3  95  80
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   76   83
  subtype2  114   96
  subtype3   95   80
     clus
vv    subtype1 subtype2 subtype3
  NO        76      114       95
  YES       83       96       80

Clustering(6) Variable = METHLYATION_CNMF
D6V1, survival
          sevent
clus2       0  1
  subtype1 19 28
  subtype2 16 21
  subtype3 18 16
subtype1 subtype2 subtype3 
      47       37       34 
subtype1 subtype2 subtype3 
      28       21       16 
$subtype1
TCGA-06-0125 TCGA-06-0152 TCGA-06-0211 TCGA-06-1804 TCGA-06-5408 TCGA-06-5413 
       47.31        11.80        11.84        13.58        11.21         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-6388 TCGA-06-6693 
        8.98         8.55         2.73         3.75         3.91         0.49 
TCGA-06-6695 TCGA-06-6699 TCGA-12-5295 TCGA-12-5299 TCGA-14-1034 TCGA-14-1395 
        8.28         1.55        13.08         3.22        15.95         1.38 
TCGA-14-1402 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5959 TCGA-19-5960 
       32.02         8.02        18.64         7.96         5.29         5.42 
TCGA-26-5132 TCGA-26-5139 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5214 
        9.40         1.58         3.91        15.55         2.53        14.20 
TCGA-28-6450 TCGA-32-1979 TCGA-32-5222 TCGA-74-6573 TCGA-74-6578 TCGA-74-6581 
        5.42        19.50         5.42         3.45        14.33         8.22 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4931 TCGA-76-4932 TCGA-76-6280 
        4.77         4.54        17.59         9.14        47.93        11.38 
TCGA-76-6656 TCGA-76-6661 TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 
        4.83         0.23         7.76         1.61         0.07 

$subtype2
TCGA-06-0171 TCGA-06-0190 TCGA-06-0650 TCGA-06-5410 TCGA-06-5412 TCGA-06-5858 
       13.02        10.29        23.57         3.52         4.54         6.12 
TCGA-06-6390 TCGA-06-6697 TCGA-06-6698 TCGA-06-6700 TCGA-14-0736 TCGA-14-0781 
        5.36        12.85         4.77         4.77        15.09         0.95 
TCGA-14-0862 TCGA-14-1043 TCGA-14-1450 TCGA-19-1389 TCGA-19-4065 TCGA-19-5947 
        2.89         0.79        58.78         4.64         7.04         6.64 
TCGA-19-5950 TCGA-19-5953 TCGA-19-5955 TCGA-19-5958 TCGA-26-6173 TCGA-28-5207 
       11.28         4.73         1.78         5.39         7.92         9.04 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5218 TCGA-32-1980 TCGA-41-6646 TCGA-74-6575 
       11.77         9.80         4.21         1.18         7.73        17.52 
TCGA-76-4928 TCGA-76-6192 TCGA-76-6282 TCGA-76-6657 TCGA-76-6662 TCGA-76-6663 
        3.09         3.29        17.06         5.03         9.24         7.69 
TCGA-81-5911 
       17.69 

$subtype3
TCGA-06-0210 TCGA-06-0221 TCGA-06-5411 TCGA-06-5416 TCGA-06-5417 TCGA-06-5859 
        4.96        18.02         8.35         6.71         5.10         4.54 
TCGA-06-6389 TCGA-06-6391 TCGA-06-6694 TCGA-06-6701 TCGA-12-5301 TCGA-14-0740 
        7.76         1.45         7.36         4.96         2.01        11.97 
TCGA-19-0957 TCGA-19-5956 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       21.86         6.51        31.33        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-6174 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
        1.22         2.30         7.79        13.64         8.52        10.49 
TCGA-41-5651 TCGA-74-6577 TCGA-74-6584 TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 
       11.54         4.31         7.46         3.65         2.53        10.78 
TCGA-76-6191 TCGA-76-6193 TCGA-76-6285 TCGA-76-6286 
       16.67         2.70         8.32        20.94 

subtype1 subtype2 subtype3 
    0.07     0.79     1.22 
subtype1 subtype2 subtype3 
   47.93    58.78    31.33 
subtype1 subtype2 subtype3 
    8.02     6.64     7.61 
[1] "0.1 - 47.9 (8.0)" "0.8 - 58.8 (6.6)" "1.2 - 31.3 (7.6)"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype1"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 21 26
  subtype2 12 25
  subtype3 19 15
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   21   26
  subtype2   12   25
  subtype3   19   15
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       21       12       19
  MALE         26       25       15
D6V4, continuous
D6V5, binary
          cls
clus        0  1
  subtype1 30 17
  subtype2 28  9
  subtype3 25  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   30   17
  subtype2   28    9
  subtype3   25    9
     clus
vv    subtype1 subtype2 subtype3
  NO        30       28       25
  YES       17        9        9
D6V6, binary
          cls
clus        0  1
  subtype1 27 20
  subtype2 24 13
  subtype3 21 13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27   20
  subtype2   24   13
  subtype3   21   13
     clus
vv    subtype1 subtype2 subtype3
  NO        27       24       21
  YES       20       13       13

Clustering(7) Variable = RPPA_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 16 42
  subtype2 22 38
  subtype3 16 27
  subtype4 19 30
subtype1 subtype2 subtype3 subtype4 
      58       60       43       49 
subtype1 subtype2 subtype3 subtype4 
      42       38       27       30 
$subtype1
TCGA-02-0003 TCGA-02-0004 TCGA-02-0068 TCGA-02-0069 TCGA-02-0116 TCGA-02-2470 
        4.73        11.34        26.43        28.70        48.95        12.92 
TCGA-06-0128 TCGA-06-0130 TCGA-06-0154 TCGA-06-0155 TCGA-06-0171 TCGA-06-0189 
       22.72        10.52        12.79         8.65        13.02        14.93 
TCGA-06-0238 TCGA-06-0650 TCGA-06-0882 TCGA-06-1084 TCGA-06-1802 TCGA-06-2557 
       11.80        23.57         5.42         7.43         7.86         1.08 
TCGA-06-2567 TCGA-06-5410 TCGA-06-5412 TCGA-06-5416 TCGA-06-6697 TCGA-08-0245 
        4.37         3.52         4.54         6.71        12.85        34.75 
TCGA-08-0348 TCGA-08-0352 TCGA-08-0353 TCGA-08-0373 TCGA-14-0871 TCGA-15-1447 
       10.39         1.28         6.41         4.41        28.90        53.19 
TCGA-19-1389 TCGA-19-1790 TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 TCGA-19-5952 
        4.64         5.03         4.08         7.00         6.64        18.64 
TCGA-19-5953 TCGA-26-5133 TCGA-26-5134 TCGA-27-1832 TCGA-27-2528 TCGA-28-1750 
        4.73        14.86         5.49         9.86        15.75         8.32 
TCGA-28-1753 TCGA-28-1757 TCGA-28-5214 TCGA-32-1982 TCGA-32-1986 TCGA-32-4211 
        1.18         0.13        14.20         4.67        12.69        12.59 
TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-74-6573 TCGA-76-4926 TCGA-76-4927 
        4.44         6.02         7.73         3.45         4.54        17.59 
TCGA-76-4928 TCGA-76-6192 TCGA-76-6282 TCGA-76-6662 
        3.09         3.29        17.06         9.24 

$subtype2
TCGA-02-0011 TCGA-02-0014 TCGA-06-0129 TCGA-06-0875 TCGA-06-1804 TCGA-06-1805 
       20.71        82.55        32.48         9.17        13.58         4.18 
TCGA-06-2558 TCGA-06-2564 TCGA-06-2566 TCGA-06-2570 TCGA-06-5411 TCGA-06-5417 
        0.76         5.95         5.98         9.37         8.35         5.10 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6695 TCGA-06-6700 TCGA-06-6701 
        3.91         7.76         1.45         8.28         4.77         4.96 
TCGA-08-0344 TCGA-08-0347 TCGA-08-0350 TCGA-08-0351 TCGA-08-0359 TCGA-08-0380 
      108.82        13.78         3.39        53.79         0.95        10.85 
TCGA-08-0385 TCGA-08-0389 TCGA-12-0691 TCGA-12-1597 TCGA-12-3649 TCGA-12-3651 
        1.02         3.19         6.08        14.04        11.54        11.77 
TCGA-14-0813 TCGA-15-1449 TCGA-16-0846 TCGA-16-1460 TCGA-19-0957 TCGA-19-0962 
        1.35         5.49         3.91         6.41        21.86         0.43 
TCGA-19-1390 TCGA-19-1786 TCGA-19-1788 TCGA-19-2620 TCGA-19-5956 TCGA-19-5958 
       25.38         7.13         3.65         4.87         6.51         5.39 
TCGA-19-5960 TCGA-26-1442 TCGA-26-6174 TCGA-27-1834 TCGA-27-1836 TCGA-27-2518 
        5.42        31.33         2.30        33.14        30.05        24.72 
TCGA-28-1746 TCGA-32-1976 TCGA-32-4210 TCGA-32-5222 TCGA-41-2573 TCGA-41-2575 
        0.20         0.49         3.68         5.42         8.94         9.53 
TCGA-41-5651 TCGA-74-6581 TCGA-76-6193 TCGA-76-6285 TCGA-76-6657 TCGA-76-6663 
       11.54         8.22         2.70         8.32         5.03         7.69 

$subtype3
TCGA-02-2485 TCGA-06-0126 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-2563 
       15.42         0.10         8.91         6.71         7.17         8.52 
TCGA-06-2565 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5856 TCGA-06-6693 
        6.81         8.81         8.98         8.55         3.75         0.49 
TCGA-06-6699 TCGA-08-0349 TCGA-08-0354 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 
        1.55         7.59        15.06        35.64        19.50         9.17 
TCGA-08-0386 TCGA-12-3646 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       15.72        43.20        10.95        34.52        11.74        13.08 
TCGA-14-1823 TCGA-15-1446 TCGA-19-1386 TCGA-19-1789 TCGA-19-1791 TCGA-19-5950 
       17.82        19.10         9.07         3.25         0.13        11.28 
TCGA-19-5951 TCGA-19-5959 TCGA-26-5132 TCGA-27-1831 TCGA-27-1833 TCGA-28-1747 
        8.02         5.29         9.40        16.57        18.25         2.53 
TCGA-28-1752 TCGA-32-1970 TCGA-32-1978 TCGA-32-1991 TCGA-41-3392 TCGA-76-4931 
        8.45        15.35        15.85        16.93         0.99         9.14 
TCGA-76-6656 
        4.83 

$subtype4
TCGA-06-0125 TCGA-06-0156 TCGA-06-0644 TCGA-06-0879 TCGA-06-0939 TCGA-06-1086 
       47.31         5.39        12.33        22.98        20.94         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-2559 TCGA-06-2562 TCGA-06-5408 TCGA-06-5418 
        3.58        26.79         4.90         2.83        11.21         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6390 TCGA-06-6694 TCGA-06-6698 TCGA-08-0345 
        6.12         4.54         5.36         7.36         4.77         1.74 
TCGA-08-0346 TCGA-08-0355 TCGA-08-0356 TCGA-08-0360 TCGA-08-0390 TCGA-08-0392 
        4.34        22.52        14.70        11.57        10.59         0.30 
TCGA-12-0692 TCGA-12-1598 TCGA-12-1599 TCGA-12-5301 TCGA-14-0862 TCGA-19-1392 
        2.63         9.44        25.28         2.01         2.89         3.48 
TCGA-19-2619 TCGA-19-4068 TCGA-19-5954 TCGA-19-5955 TCGA-26-1440 TCGA-26-6173 
        9.67         4.47         7.96         1.78         9.73         7.92 
TCGA-27-1830 TCGA-28-1760 TCGA-28-5208 TCGA-32-1987 TCGA-41-4097 TCGA-74-6575 
        4.80         4.70        15.55        14.83         0.20        17.52 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4929 TCGA-76-4932 TCGA-76-6664 
        4.31        14.33         7.46         3.65        47.93         7.76 
TCGA-81-5910 
        1.61 

subtype1 subtype2 subtype3 subtype4 
    0.13     0.20     0.10     0.20 
subtype1 subtype2 subtype3 subtype4 
   53.19   108.82    43.20    47.93 
subtype1 subtype2 subtype3 subtype4 
    8.09     6.46     9.07     6.35 
[1] "0.1 - 53.2 (8.1)"  "0.2 - 108.8 (6.5)" "0.1 - 43.2 (9.1)" 
[4] "0.2 - 47.9 (6.3)" 
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [19] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype4" "subtype1"
 [31] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
 [43] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
 [49] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype3" "subtype4" "subtype2"
 [67] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
 [85] "subtype4" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
 [97] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype4"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[133] "subtype1" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype4" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype4"
[169] "subtype4" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[175] "subtype1" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype4"
[187] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[193] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[199] "subtype3" "subtype4" "subtype1" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [19] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype4" "subtype1"
 [31] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
 [43] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
 [49] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype3" "subtype4" "subtype2"
 [67] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
 [85] "subtype4" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
 [97] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype4"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[133] "subtype1" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype4" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype4"
[169] "subtype4" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[175] "subtype1" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype4"
[187] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[193] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[199] "subtype3" "subtype4" "subtype1" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [19] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype4" "subtype1"
 [31] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
 [43] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
 [49] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype3" "subtype4" "subtype2"
 [67] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
 [85] "subtype4" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
 [97] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype4"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[133] "subtype1" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype4" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype4"
[169] "subtype4" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[175] "subtype1" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype4"
[187] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[193] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[199] "subtype3" "subtype4" "subtype1" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 17 41
  subtype2 26 34
  subtype3 18 25
  subtype4 24 25
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   41
  subtype2   26   34
  subtype3   18   25
  subtype4   24   25
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       17       26       18       24
  MALE         41       34       25       25
D7V4, continuous
D7V5, binary
          cls
clus        0  1
  subtype1 40 18
  subtype2 43 17
  subtype3 34  9
  subtype4 33 16
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   40   18
  subtype2   43   17
  subtype3   34    9
  subtype4   33   16
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        40       43       34       33
  YES       18       17        9       16
D7V6, binary
          cls
clus        0  1
  subtype1 29 29
  subtype2 37 23
  subtype3 25 18
  subtype4 27 22
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29   29
  subtype2   37   23
  subtype3   25   18
  subtype4   27   22
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        29       37       25       27
  YES       29       23       18       22

Clustering(8) Variable = RPPA_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 35 62
  subtype2 27 45
  subtype3 11 30
subtype1 subtype2 subtype3 
      97       72       41 
subtype1 subtype2 subtype3 
      62       45       30 
$subtype1
TCGA-02-0011 TCGA-02-0014 TCGA-06-0125 TCGA-06-0129 TCGA-06-0130 TCGA-06-0156 
       20.71        82.55        47.31        32.48        10.52         5.39 
TCGA-06-0644 TCGA-06-0875 TCGA-06-0879 TCGA-06-0939 TCGA-06-1087 TCGA-06-1800 
       12.33         9.17        22.98        20.94         3.58        26.79 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2566 
       13.58         4.18         0.76         4.90         2.83         5.98 
TCGA-06-2570 TCGA-06-5411 TCGA-06-5416 TCGA-06-5417 TCGA-06-5418 TCGA-06-5858 
        9.37         8.35         6.71         5.10         2.73         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 
        4.54         3.91         7.76         1.45         7.36         8.28 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6701 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       12.85         4.77         4.96       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0350 TCGA-08-0351 TCGA-08-0356 TCGA-08-0359 TCGA-08-0360 
       13.78         3.39        53.79        14.70         0.95        11.57 
TCGA-08-0380 TCGA-08-0385 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-12-1597 
       10.85         1.02         3.19        10.59         0.30        14.04 
TCGA-12-1598 TCGA-12-1599 TCGA-12-3649 TCGA-12-3651 TCGA-12-5301 TCGA-14-0813 
        9.44        25.28        11.54        11.77         2.01         1.35 
TCGA-14-0862 TCGA-14-0871 TCGA-15-1449 TCGA-16-0846 TCGA-16-1460 TCGA-19-0957 
        2.89        28.90         5.49         3.91         6.41        21.86 
TCGA-19-0962 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1788 TCGA-19-5954 
        0.43         4.64        25.38         3.48         3.65         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-26-1442 TCGA-26-6173 TCGA-26-6174 
        1.78         6.51         5.39        31.33         7.92         2.30 
TCGA-27-1830 TCGA-27-1834 TCGA-28-1746 TCGA-28-1760 TCGA-28-5208 TCGA-32-1976 
        4.80        33.14         0.20         4.70        15.55         0.49 
TCGA-32-1987 TCGA-32-4210 TCGA-41-2573 TCGA-41-2575 TCGA-41-3915 TCGA-41-4097 
       14.83         3.68         8.94         9.53         6.02         0.20 
TCGA-41-5651 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
       11.54        17.52         4.31        14.33         8.22         7.46 
TCGA-76-4929 TCGA-76-6192 TCGA-76-6193 TCGA-76-6285 TCGA-76-6657 TCGA-76-6663 
        3.65         3.29         2.70         8.32         5.03         7.69 
TCGA-81-5910 
        1.61 

$subtype2
TCGA-02-2485 TCGA-06-0126 TCGA-06-0154 TCGA-06-0155 TCGA-06-0876 TCGA-06-0877 
       15.42         0.10        12.79         8.65         8.91         6.71 
TCGA-06-0878 TCGA-06-2557 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 
        7.17         1.08         8.52         5.95         6.81         4.37 
TCGA-06-5408 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5856 TCGA-06-6390 
       11.21         8.81         8.98         8.55         3.75         5.36 
TCGA-06-6693 TCGA-06-6699 TCGA-06-6700 TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 
        0.49         1.55         4.77         7.59         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 TCGA-08-0386 
       15.06        22.52        35.64        19.50         9.17        15.72 
TCGA-12-0691 TCGA-12-3646 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
        6.08        43.20        10.95        34.52        11.74        13.08 
TCGA-14-1823 TCGA-15-1446 TCGA-19-1386 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 
       17.82        19.10         9.07         7.13         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-4068 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        9.67         4.87         4.47        11.28         8.02        18.64 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1440 TCGA-26-5132 TCGA-27-1831 TCGA-27-1833 
        5.29         5.42         9.73         9.40        16.57        18.25 
TCGA-27-1836 TCGA-27-2528 TCGA-28-1747 TCGA-28-1752 TCGA-28-1757 TCGA-28-5214 
       30.05        15.75         2.53         8.45         0.13        14.20 
TCGA-32-1970 TCGA-32-1978 TCGA-32-1982 TCGA-32-1991 TCGA-32-5222 TCGA-41-3392 
       15.35        15.85         4.67        16.93         5.42         0.99 
TCGA-41-3393 TCGA-76-4931 TCGA-76-4932 TCGA-76-6282 TCGA-76-6656 TCGA-76-6664 
        4.44         9.14        47.93        17.06         4.83         7.76 

$subtype3
TCGA-02-0003 TCGA-02-0004 TCGA-02-0068 TCGA-02-0069 TCGA-02-0116 TCGA-02-2470 
        4.73        11.34        26.43        28.70        48.95        12.92 
TCGA-06-0128 TCGA-06-0171 TCGA-06-0189 TCGA-06-0238 TCGA-06-0650 TCGA-06-0882 
       22.72        13.02        14.93        11.80        23.57         5.42 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1802 TCGA-06-5410 TCGA-06-5412 TCGA-08-0245 
        7.43         6.35         7.86         3.52         4.54        34.75 
TCGA-08-0348 TCGA-08-0373 TCGA-12-0692 TCGA-15-1447 TCGA-19-1790 TCGA-19-2625 
       10.39         4.41         2.63        53.19         5.03         4.08 
TCGA-19-2631 TCGA-19-5947 TCGA-19-5953 TCGA-26-5133 TCGA-26-5134 TCGA-27-1832 
        7.00         6.64         4.73        14.86         5.49         9.86 
TCGA-27-2518 TCGA-28-1750 TCGA-28-1753 TCGA-32-1986 TCGA-32-4211 TCGA-41-6646 
       24.72         8.32         1.18        12.69        12.59         7.73 
TCGA-74-6573 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-6662 
        3.45         4.54        17.59         3.09         9.24 

subtype1 subtype2 subtype3 
    0.20     0.10     1.18 
subtype1 subtype2 subtype3 
  108.82    47.93    53.19 
subtype1 subtype2 subtype3 
    6.51     8.73     8.32 
[1] "0.2 - 108.8 (6.5)" "0.1 - 47.9 (8.7)"  "1.2 - 53.2 (8.3)" 
  [1] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[115] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[115] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[115] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1 43 54
  subtype2 28 44
  subtype3 14 27
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   43   54
  subtype2   28   44
  subtype3   14   27
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       43       28       14
  MALE         54       44       27
D8V4, continuous
D8V5, binary
          cls
clus        0  1
  subtype1 65 32
  subtype2 56 16
  subtype3 29 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   65   32
  subtype2   56   16
  subtype3   29   12
     clus
vv    subtype1 subtype2 subtype3
  NO        65       56       29
  YES       32       16       12
D8V6, binary
          cls
clus        0  1
  subtype1 56 41
  subtype2 41 31
  subtype3 21 20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   56   41
  subtype2   41   31
  subtype3   21   20
     clus
vv    subtype1 subtype2 subtype3
  NO        56       41       21
  YES       41       31       20
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V6 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
